TCONS_00058516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058516
Unique NameTCONS_00058516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058516 ID=TCONS_00058516|Name=TCONS_00058516|organism=Clytia hemisphaerica|type=transcript|length=888bp
ACCCCATATTgttcctacggcactgtatgTATGCAAGCAAGGCTAAGTTA
TTGAAAGGTGTTTTAAGATGATAATGCACCACTTTCAatcaaaagtttct
ttttctccaagaaaaagtcttcaaagaaaGTCAACCGAGTTAAACGGTTA
TCATGACAGGGCATCTGTTTAATACGTAACGAATTAGTGTCCTTTGCAAT
CTTATGGTTAACTCGGAGCAACATTCGTAAAATATCTTCTCGTTTGTATT
GCTCTTTGAAAATTTGTACCAGAGAATTAATAAACACTGAGCCGAAAGCT
TGATTCCTGACTGAAGTGTATCCAGGACTGCATGGATAACAAAGGAGAAA
CTCACTCGTGTCTGGAACATGGCGTTTGAAATTCGTCGGTGGTGCAGCAC
AGTCGGCGTCCGTATCTTCAATACAGTAACCCAAATCATCAACGTCTCCA
CGGCACGCTTGCATAATAAAGACTTTAGGTTTTTCAACAAGAGAAGGACA
TTTTGTACTGGTGAATAGTGGGAGAACATCTTCCTCAATTTTTAACACAT
TTCGATGATCTTTTTGACGACTATCACGTCCACATATTCCATACTCATTT
CCATGGCTTAagataataagaaaaaaagcaCCGTTTCGTGTGAAATCGTA
CCGACTCAAATTGGTGAGTTTATCTTTCATCTTAGCAACAGTTAAGTCTC
GATATATTTCTAAATTATCATTCCAACGGATGGTGTATAGGAAGAAATCT
TGTAATAATTTAACATCTTGATCAGAACCAATTCTTTCTTTGAAATGGTC
AAAATGCACATTATTGATGATAACCACACGGCCATTGTTTCCCATGTTGT
ACAAGAAATCTGGTGGTTCTTGGTAACGTTGTGCAACC
Run BLAST on NCBI

transcript from alignment at scaffold_311:215972..217342-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058516 ID=TCONS_00058516|Name=TCONS_00058516|organism=Clytia hemisphaerica|type=transcript|length=1371bp|location=Sequence derived from alignment at scaffold_311:215972..217342- (Clytia hemisphaerica)
ACCCCATATTGTTCCTACGGCACTGTATGTATGCAAGCAAGGCTAAGTTA
TTGAAAGGTGTTTTGAGATGATAATGCACCCATTTTCAATCAAAAGTTTC
GGCCAAAATTTAATAAAAAACATCCGTGACGCCCAATCCATCATGATCCC
AGCTGGCACACAACGTTGTTTAAACGTTAATATAACGTTATATGGACGTA
GTGAACGTTAGATAGACGTTGAAACAACGTTGTGTGCCTGCTGGGATATA
GATAAAACTTTTAAAAACTTTAAAAAACTTCTTTTGTAAACAAGCTAGAT
GCTGAATCGACCTACCGGATGATTAAAGTTAAATAAAAATTAAAATGAAA
ACAATAACTGGTAACAGACGGACGGGCGGACGGACAAAGGTTAATTTATA
GGACCTCCAGGTAGGTCCAAAAAAATGTACGCATGAGTATTTATGGTATT
AAACACGTGTTTACTGAACAGAACACTAAATTCAATACCTCGTCTAGGTC
CAGTACTGTGCACCAGTAAGCTGAAATAGATCATTGGCAGGTGTTTTAAG
ATGATAATGCACCACTTTCAATCAAAAGTTTCTTTTTCTCCAAGAAAAAG
TCTTCAAAGAAAGTCAACCGAGTTAAACGGTTATCATGACAGGGCATCTG
TTTAATACGTAACGAATTAGTGTCCTTTGCAATCTTATGGTTAACTCGGA
GCAACATTCGTAAAATATCTTCTCGTTTGTATTGCTCTTTGAAAATTTGT
ACCAGAGAATTAATAAACACTGAGCCGAAAGCTTGATTCCTGACTGAAGT
GTATCCAGGACTGCATGGATAACAAAGGAGAAACTCACTCGTGTCTGGAA
CATGGCGTTTGAAATTCGTCGGTGGTGCAGCACAGTCGGCGTCCGTATCT
TCAATACAGTAACCCAAATCATCAACGTCTCCACGGCACGCTTGCATAAT
AAAGACTTTAGGTTTTTCAACAAGAGAAGGACATTTTGTACTGGTGAATA
GTGGGAGAACATCTTCCTCAATTTTTAACACATTTCGATGATCTTTTTGA
CGACTATCACGTCCACATATTCCATACTCATTTCCATGGCTTAAGATAAT
AAGAAAAAAAGCACCGTTTCGTGTGAAATCGTACCGACTCAAATTGGTGA
GTTTATCTTTCATCTTAGCAACAGTTAAGTCTCGATATATTTCTAAATTA
TCATTCCAACGGATGGTGTATAGGAAGAAATCTTGTAATAATTTAACATC
TTGATCAGAACCAATTCTTTCTTTGAAATGGTCAAAATGCACATTATTGA
TGATAACCACACGGCCATTGTTTCCCATGTTGTACAAGAAATCTGGTGGT
TCTTGGTAACGTTGTGCAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036865XLOC_036865Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058516-exon-scaffold_311-1575043694:217286..217342TCONS_00058516-exon-scaffold_311-1575043694:217286..217342Clytia hemisphaericaexon
TCONS_00058516-exon-scaffold_311-1575043694:215972..216802TCONS_00058516-exon-scaffold_311-1575043694:215972..216802Clytia hemisphaericaexon
TCONS_00058516-exon-scaffold_311-1510915933:217286..217342TCONS_00058516-exon-scaffold_311-1510915933:217286..217342Clytia hemisphaericaexon
TCONS_00058516-exon-scaffold_311-1510915933:215972..216802TCONS_00058516-exon-scaffold_311-1510915933:215972..216802Clytia hemisphaericaexon
TCONS_00058516-exon-scaffold_311-1491911889:217286..217342TCONS_00058516-exon-scaffold_311-1491911889:217286..217342Clytia hemisphaericaexon
TCONS_00058516-exon-scaffold_311-1491911889:215972..216802TCONS_00058516-exon-scaffold_311-1491911889:215972..216802Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:215972..217342 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16632	2.26521	0.38014	0	3.8696	3.42324	5.50461	6.98013	4.02184	7.92099	2.89575	1.32747	5.95337	2.57081	3.7974	4.44573	3.11715	3.20447	4.24916	8.35064	1.71624	0.641122	1.66958	2.32061	4.59838	8.27237	7.08534	12.2722	4.64198	2.77548
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015917Pept_C14A
IPR033139Caspase_cys_AS
IPR002138Pept_C14_p10
IPR001309Pept_C14_p20
IPR029030Caspase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO:0004197cysteine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004197 cysteine-type endopeptidase activity
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
[Close]
BLAST of TCONS_00058516 vs. Swiss-Prot (Human)
Match: CASP7 (Caspase-7 OS=Homo sapiens GN=CASP7 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.931e-27
Identity = 79/229 (34.50%), Postives = 115/229 (50.22%), Query Frame = -2 
Query:  135 RIGSDQDVKLLQDFFLYTIRWNDNLEIYRDLTVAKMKDKLTNLSRYDFTRNGAFFLIILSHGNEYGICGRDSRQKDHRNVLKIEEDVLPLFTSTKCPSLVEKPKVFIMQACRGDVDDLGY-----CIEDTDADCAAPPTNFKRHVPDTSEFLLCYPCSPGYTSVRNQAFGSVFINSLVQIFKEQYKREDILRMLLRVNHKIAK-------DTNSLRIKQMPCHDNRLTR 785
            R G+D+D + L   F        ++ +Y D + AKM+D L   S  D T    F  I+LSHG E  I G+D        V  I+ D+   F   +C +L+EKPK+F +QACRG   D G       I DTDA       N +  +P  ++FL  Y   PGY S R+   GS F+ +L  I +E  K  +I+++L RVN ++A+       D +    KQ+PC  + LT+
Sbjct:   87 RNGTDKDAEALFKCFR---SLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDG-------VTPIK-DLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQADSGPINDTDA-------NPRYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTK 297
The following BLAST results are available for this feature:
BLAST of TCONS_00058516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CASP78.931e-2734.50Caspase-7 OS=Homo sapiens GN=CASP7 PE=1 SV=1[more]
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