TCONS_00058535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058535
Unique NameTCONS_00058535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058535 ID=TCONS_00058535|Name=TCONS_00058535|organism=Clytia hemisphaerica|type=transcript|length=1550bp
CGCCCATCTTCGTCTAGtgaaaatgttgataatgtCACTGGCGAAAGAGG
GGTTAAAAAATAAACTGGACTATGGCTTCAATCACTCCAACCAGATTCAG
TGGAAGACTTAAGCAGAAGAAAAAAGAGATTGCAGATCGTGAAATACGGA
AACAGACGGAAACATTAATTTTCGGGAATCTTGTCAATTCAATCAATTTG
GAACGAGAAACATCTAAAGCTGATAATGATGTATCAGAAGTGAAGGAATT
ACATCTTGAAAATGATTGTGAAGAATTGGTAAAGAAACTTGAACAGATTA
AATTGGAGAGGAGATCTGATCGNTGAAGTGAAAGaattaaatcttgaaaa
tgatTGTGAGGAATTGGTAAAGAAACTTGAACAGATTAAATTGGAGAGGA
AATCTGATCGCGTGAAGAAAAAGAATGAGGTGGATAAATACAAGATGCAA
ATAAAGCGATGCAAAGAAATGAATGCGAAATACAAAAGACAGTATCTCGA
CGTAACGCCTGAAAAATATTTCCAGATGATGTTTAATGCTAAAATATCAT
GGATAGGCGATGACACATGGTTTCGAATTGACGATAAGACTTTCAATATT
AGTATTAAAccgaaagaagaagaagaaaatgaaggagTTCTACCAGAAAT
CGAACTGATGAGAGACATAGAACGAAAACATGCCAGCAAAGATGATAACC
TTGTGTGGGGTGTTGAGAGATTCGCATACAAAACAGAATCTCATCTATTC
GACTCATACCAAGAATGGTATCAACACATCTCTGGTTATTTACCAAATAA
GACGTTTCGAAAGGTCATCCGCAAACCAAACGATTATTACTTCCTAAGGG
TAGAGCTTCATGAAAAATACGATCACCTGCACTTGATCACTAAACGAAAA
ACGACACCACCGCCAGCGATGGTCATGCCTAATCATTTGCTAATGGACAT
TAGTGGAGATGTTTTTGAACAAATGCACTCGTTTCTTTTACATCCAACAA
AAATAGAGGGAATCCGAATGTCTCGTGTTAAAAGCGCTGATTGGCTTGAA
AAACGTTTCTATCGCGAACTGGAAGATGGTCATTATTTTGGCGAAAATAA
TTCAGTCATTATACTGTTCCATGAACTGGttgtttttaagaaaaactagA
GGACACATTTGGATTTTTGGATAAGCAGAATAAACTTTAGAGTTTAAGTT
TTATACaaagtgtattttacagaacaataTACATGAACGCACGAGCGAGC
ATTCGTTACCGCGTGTGCCATCCAGATGTGAGTGTTGACAATTCAAACTG
TTTTCATCCCTTTTTGACAACTGTAAGGTGCAGACATGTTTGAAAAAAAG
ACTAAATTTTATTTATAATCGTCGACCCAAAAAAACATCaacgttttgat
tggtcaagagcatcgagatatttgcgatatctcatatttctctagtatgg
aaatatgaccgcgatTATCGGCACTTTACATGTATTAATTGTTTTCATTG
ATAAaggtgttttttttacttgtattAATGGATACAGGAGACTTaactcg
Run BLAST on NCBI

protein sequence of TCONS_00058535-protein

>TCONS_00058535-protein ID=TCONS_00058535-protein|Name=TCONS_00058535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MQIKRCKEMNAKYKRQYLDVTPEKYFQMMFNAKISWIGDDTWFRIDDKTF
NISIKPKEEEENEGVLPEIELMRDIERKHASKDDNLVWGVERFAYKTESH
LFDSYQEWYQHISGYLPNKTFRKVIRKPNDYYFLRVELHEKYDHLHLITK
RKTTPPPAMVMPNHLLMDISGDVFEQMHSFLLHPTKIEGIRMSRVKSADW
LEKRFYRELEDGHYFGENNSVIILFHELVVFKKN
Run BLAST on NCBI

transcript from alignment at scaffold_311:539308..542940-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058535 ID=TCONS_00058535|Name=TCONS_00058535|organism=Clytia hemisphaerica|type=transcript|length=3633bp|location=Sequence derived from alignment at scaffold_311:539308..542940- (Clytia hemisphaerica)
CGCCCATCTTCGTCTAGTGAAAATGTTGATAATGTCACTGGCGAAAGAGG
GGTAAAACTTATATTATGTTGTTTGTTTATACCAGTGGTGGATATAATGT
GGGGGATGTAATGTGGGGGATATAATGTGGGGGATATAATGTGGGGGATA
TAATGTGGGGAATATAATGTGGGGAATATAATGTGGGGAATATAATGTGG
GGGATATAATGTGGGGAAAATTTAGAGTGGGGGATATAATGTGGGGAATA
TAATGTGGGGAATATAATGTCGGGAATATAATGTGGGGAATATAATGTGG
GAATATAATGTGGGGGATATAATGTGGGGAATATAATGTGGGGAATATAA
TGTGGGGAATATTAATGTGGGGAATATAATGTGGGGGATATAATGTGGGG
AATACAATGTGGGGCATACAATGTGGGGAATATAATGTGGGGAATATAAT
GTGGGGAATATAATGTGGGGAATACAATGTGGGGAATATAATGTGGGGAA
TATAATGTGGGGAATATAATGTGGGGAATACAATGTGGGGAATATAATGT
GGGGAATACAATGTAGGGGAATATAATGTGGGGAATATAATGTGGGGAAT
ACAATGTAGGGGAATATAATGTGGGGAATATAATGTGGGGAATACAATGT
AGGGGAATATAATGTGGGGAATATAATGTGGGGAATACAATGTAGGGGAA
TATAATGTGGGGAATATAATGTGGGGAATACAATGTAGGGGAATATAATG
TGGGGAATATAATGTGGGGAATACAATGTAGGGGAATATAATGTGGGGTT
CAAAATTCATAGCTGAGTGTTACTTTAGAAATACTCCTTACACGCCATTT
TTCTATAAGAATATACTTTTATAAGAATGTTCATGACAGAATGGGCCTTA
AAATTAAGAATATGCTAAGAATATCACAATCATGGAATTTTGCAACTAAA
GCTAGAGAATGCCATTTTTAGAGCTTTTTCAATTTTAAATTGCCAATTAC
CCTCAAGTAAGGCTCAATACTTCAACAAAGATGCCACTTTATGGTTTAGA
CATATAAATGAAGACAAAATGGTAAAGCTGATTTGAATTAGGGTCCTAAC
CTAAGAATGCTGTAAGAATGCTTTAGGACGATTTCCCCCAAAAAGTTAAG
AATATCCATGATGAAATGAAAAAACACCATTCTTATAAAAAAAAGGCGTG
TATAAGGGATTAAAACTCTCCGTGTAATAAATTTTGAGCCCCCTTGGATC
CACGACTTTATACATAAGGTCAAGCACCTGTGTTGGTTCAAAATTAATGA
ACGGAGAGTGTTTTTTACTCCTTATAATCTCATGGTTGATTGAAATACGA
TTGACGTTTTTGCTTACGTTAATTTGTAATTTCCCGCGAACTTGTAATTT
CCCTCCTAGCTTTTGTAATTCCCCTCCTAGATTTTGTAATTTCCCGCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTCGGTCAAATTTC
GAAATGTTTTAAATTTCCCTCGTTGCACTCGGGAAATTTCAAAAAATTTC
AAAATTGACCTCGGAAAATCCCGAATTTCCCTCATAACCATGAGATTACT
AGAACTAATGAATTTTGAGCTTCTTCAGATCCACAACTGCCCGCTGCTTT
TATCGTCAGAATCGTAATAGTCTATTTCGTACAGGTTAAAAAATAAACTG
GACTATGGCTTCAATCACTCCAACCAGATTCAGTGGAAGACTTAAGCAGA
AGAAAAAAGAGATTGCAGATCGTGAAATACGGAAACAGACGGAAACATTA
ATTTTCGGGAATCTTGTCAATTCAATCAATTTGGAACGAGAAACATCTAA
AGCTGATAATGATGTATCAGAAGTGAAGGAATTACATCTTGAAAATGATT
GTGAAGAATTGGTAAAGAAACTTGAACAGATTAAATTGGAGAGGAGATCT
GATCGNTGAAGTGAAAGAATTAAATCTTGAAAATGATTGTGAGGAATTGG
TAAAGAAACTTGAACAGATTAAATTGGAGAGGAAATCTGATCGCGTGAAG
AAAAAGAATGAGGTGGATAAATACAAGATGCAAATAAAGCGATGCAAAGA
AATGAATGCGAAATACAAAAGACAGTATCTCGACGTAACGCCTGAAAAAT
ATTTCCAGATGATGTTTAATGCTAAAATATCATGGATAGGCGATGACACA
TGGTTTCGAATTGACGATAAGACTTTCAATATTAGTATTAAACCGAAAGA
AGAAGAAGAAAATGAAGGAGTTCTACCAGAAATCGAACTGATGAGAGACA
TAGAACGAAAACATGCCAGCAAAGATGATAACCTTGTGTGGGGTGTTGAG
AGATTCGCATACAAAACAGAATCTCATCTATTCGACTCATACCAAGAATG
GTATCAACACATCTCTGGTTATTTACCAAATAAGACGTTTCGAAAGGTCA
TCCGCAAACCAAACGATTATTACTTCCTAAGGGTAGAGCTTCATGAAAAA
TACGATCACCTGCACTTGATCACTAAACGAAAAACGACACCACCGCCAGC
GATGGTCATGCCTAATCATTTGCTAATGGACATTAGTGGAGATGTTTTTG
AACAAATGCACTCGTTTCTTTTACATCCAACAAAAATAGAGGGAATCCGA
ATGTCTCGTGTTAAAAGCGCTGATTGGCTTGAAAAACGTTTCTATCGCGA
ACTGGAAGATGGTCATTATTTTGGCGAAAATAATTCAGTCATTATACTGT
TCCATGAACTGGTTGTTTTTAAGAAAAACTAGAGGACACATTTGGATTTT
TGGATAAGCAGAATAAACTTTAGAGTTTAAGTTTTATACAAAGTGTATTT
TACAGAACAATATACATGAACGCACGAGCGAGCATTCGTTACCGCGTGTG
CCATCCAGATGTGAGTGTTGACAATTCAAACTGTTTTCATCCCTTTTTGA
CAACTGTAAGGTGCAGACATGTTTGAAAAAAAGACTAAATTTTATTTATA
ATCGTCGACCCAAAAAAACATCAACGTTTTGATTGGTCAAGAGCATCGAG
ATATTTGCGATATCTCATATTTCTCTAGTATGGAAATATGACCGCGATTA
TCGGCACTTTACATGTATTAATTGTTTTCATTGATAAAGGTGTTTTTTTT
ACTTGTATTAATGGATACAGGAGACTTAACTCG

Coding sequence (CDS) from alignment at scaffold_311:539308..542940-

>TCONS_00058535 ID=TCONS_00058535|Name=TCONS_00058535|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at scaffold_311:539308..542940- (Clytia hemisphaerica)
ATGCAAATAAAGCGATGCAAAGAAATGAATGCGAAATACAAAAGACAGTA
TCTCGACGTAACGCCTGAAAAATATTTCCAGATGATGTTTAATGCTAAAA
TATCATGGATAGGCGATGACACATGGTTTCGAATTGACGATAAGACTTTC
AATATTAGTATTAAACCGAAAGAAGAAGAAGAAAATGAAGGAGTTCTACC
AGAAATCGAACTGATGAGAGACATAGAACGAAAACATGCCAGCAAAGATG
ATAACCTTGTGTGGGGTGTTGAGAGATTCGCATACAAAACAGAATCTCAT
CTATTCGACTCATACCAAGAATGGTATCAACACATCTCTGGTTATTTACC
AAATAAGACGTTTCGAAAGGTCATCCGCAAACCAAACGATTATTACTTCC
TAAGGGTAGAGCTTCATGAAAAATACGATCACCTGCACTTGATCACTAAA
CGAAAAACGACACCACCGCCAGCGATGGTCATGCCTAATCATTTGCTAAT
GGACATTAGTGGAGATGTTTTTGAACAAATGCACTCGTTTCTTTTACATC
CAACAAAAATAGAGGGAATCCGAATGTCTCGTGTTAAAAGCGCTGATTGG
CTTGAAAAACGTTTCTATCGCGAACTGGAAGATGGTCATTATTTTGGCGA
AAATAATTCAGTCATTATACTGTTCCATGAACTGGTTGTTTTTAAGAAAA
ACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036873XLOC_036873Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058535-proteinTCONS_00058535-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058535-exon-scaffold_311-1575043694:542890..542940TCONS_00058535-exon-scaffold_311-1575043694:542890..542940Clytia hemisphaericaexon
TCONS_00058535-exon-scaffold_311-1575043694:539308..540806TCONS_00058535-exon-scaffold_311-1575043694:539308..540806Clytia hemisphaericaexon
TCONS_00058535-exon-scaffold_311-1510915933:542890..542940TCONS_00058535-exon-scaffold_311-1510915933:542890..542940Clytia hemisphaericaexon
TCONS_00058535-exon-scaffold_311-1510915933:539308..540806TCONS_00058535-exon-scaffold_311-1510915933:539308..540806Clytia hemisphaericaexon
TCONS_00058535-exon-scaffold_311-1491911889:542890..542940TCONS_00058535-exon-scaffold_311-1491911889:542890..542940Clytia hemisphaericaexon
TCONS_00058535-exon-scaffold_311-1491911889:539308..540806TCONS_00058535-exon-scaffold_311-1491911889:539308..540806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:539308..542940 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158737	0.257989	0.329506	0.205144	1.07033	1.2123	4.55782	5.73176	2.29629	1.18744	2.33192	2.25532	4.24044	4.54992	3.04961	5.72319	1.88675	2.91097	0	0.0294292	1.43244	1.45977	0.697685	0.854922	2.21558	2.50971	0.21766	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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