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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058536 ID=TCONS_00058536|Name=TCONS_00058536|organism=Clytia hemisphaerica|type=transcript|length=867bp
caaaatattttaaaatttccctATCCAGAATCGTTATTTACAAGTCTAGG
AATATGTAATATATTCTACAtttataaaattgataaaatttttgctattt
taaaTAATTAAATTTCTAAATATGTATAAAAACTGAAATATTACTGGAAA
TTTAAAGCAGTTCGCTCCTGGTAAAAAGTATAccaataccttatcggcca
aaacttgtcggccttaattttagtcggtcttaattattagtcggtcctaa
ttttagtcacctcgtcaaagtTTAgtatttagtcacttagggccgactaa
gcgGTTCTATTTACagttaatttggcccaaatttttagtcggccctaatt
ttaatcaccaagccaaaatttcgtcatttagggccgactaagttttggcc
gataaggtacattAAAATCCAATTTGTAGCTACAAGTGAGGCCTTACAAC
GCAAATGATTGGCTTCTAATTAATACAGCTTAAGAAACTACAAGCTGATC
TCATAATACGATAACTAAGCACCAGAGACAGCAGAAAAAGaaatcacgaa
atttaatctcgtGAAAGTTAATTCGATTAAATTATCTATCCATAAGGCCT
CAATCTTTGAAGAATATCTTTGAGGATAAGTATTAGGGAAATCTGTGACA
AGATAGGTTCGAAGCTCCTTTATGACTCACTCATACCATTTATGCTACGT
TGTGCACGATTTAGCTTTAAAAGCAAACatgacgtcatcgattGACACAT
TGAGTCTCACTCTTTGAAGAATATCTTTGATTCCGTTTTCGATGAGGAGA
AGACGGAACGAGCCCAAATAATTACAAATGGTGAATGCTTCTGATGTGTT
GGGTGGTTCAAAGCCTC Run BLAST on NCBI transcript from alignment at scaffold_311:572168..573183- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058536 ID=TCONS_00058536|Name=TCONS_00058536|organism=Clytia hemisphaerica|type=transcript|length=1016bp|location=Sequence derived from alignment at scaffold_311:572168..573183- (Clytia hemisphaerica)
CAAAATATTTTAAAATTTCCCTATCCAGAATCGTTATTTACAAGTCTAGG
AATATGTAATATATTCTACATTTATAAAATTGATAAAATTTTTGCTATTT
TAAATAATTAAATTTCTAAATATGTATAAAAACTGAAATATTACTGGAAA
TTTAAAGCAGTTCGCTCCTGGTAAAAAGTATACCAATACCTTATCGGCCA
AAACTTGTCGGCCTTAATTTTAGTCGGTCTTAATTATTAGTCGGTCCTAA
TTTTAGTCACCTCGTCAAAGTTTAGTATTTAGTCACTTAGGGCCGACTAA
GCGGTTCTATTTACAGTTAATTTGGCCCAAATTTTTAGTCGGCCCTAATT
TTAATCACCAAGCCAAAATTTCGTCATTTAGGGCCGACTAAGTTTTGGCC
GATAAGGTACATTAAAATCCAATTTGTAGCTACAAGTGAGGCCTTACAAC
GCAAATGATTGGCTTCTAATTAATACAGCTTAAGAAACTACAAGCTGATC
TCATAATACGATAACTAAGCACCAGAGACAGCAGAAAAAGAAATCACGAA
ATTTAATCTCGTGAAAGTTAATTCGATTAAATTATCTATCCATAAGGCCT
CAATCTTTGAAGAATATCTTTGAGGATAAGTATTAGGGAAATCTGTGACA
AGATAGGTTCGAAGCTCCTTTATGACTCACTCATACCATTTATGCTACGT
TGTGCACGATTTAGCTTTAAAAGCAAACATGACGTCACCAATTGACATAT
TCAGCCTCGGTCTCTAAAGAACATCCTTTTGAAGATAAGTATTGCTAATT
GGCATCTGTAGCACTCAAAGGCAGGATCGAAGCTCTTTTATGTCTACGTT
ATGCTCGATTTAGCTTTAAAAGCAAACATGACGTCATCGATTGACACATT
GAGTCTCACTCTTTGAAGAATATCTTTGATTCCGTTTTCGATGAGGAGAA
GACGGAACGAGCCCAAATAATTACAAATGGTGAATGCTTCTGATGTGTTG
GGTGGTTCAAAGCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058536-exon-scaffold_311-1575043694:572456..573183 | TCONS_00058536-exon-scaffold_311-1575043694:572456..573183 | Clytia hemisphaerica | exon |
| TCONS_00058536-exon-scaffold_311-1575043694:572168..572306 | TCONS_00058536-exon-scaffold_311-1575043694:572168..572306 | Clytia hemisphaerica | exon |
| TCONS_00058536-exon-scaffold_311-1510915933:572456..573183 | TCONS_00058536-exon-scaffold_311-1510915933:572456..573183 | Clytia hemisphaerica | exon |
| TCONS_00058536-exon-scaffold_311-1510915933:572168..572306 | TCONS_00058536-exon-scaffold_311-1510915933:572168..572306 | Clytia hemisphaerica | exon |
| TCONS_00058536-exon-scaffold_311-1491911889:572456..573183 | TCONS_00058536-exon-scaffold_311-1491911889:572456..573183 | Clytia hemisphaerica | exon |
| TCONS_00058536-exon-scaffold_311-1491911889:572168..572306 | TCONS_00058536-exon-scaffold_311-1491911889:572168..572306 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:572168..573183 - |
Blast
The following BLAST results are available for this feature:
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