TCONS_00058544 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058544
Unique NameTCONS_00058544
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058544 ID=TCONS_00058544|Name=TCONS_00058544|organism=Clytia hemisphaerica|type=transcript|length=1455bp
tagatttcgaccatgattaaAGATATAGCTTATAGGAAATAAAATCGCAt
aaattctttgtttttaaggTCAACGTGCGTCACCCTTTGGATGCTAAAAA
TTGAGAACAGTTCAAGAAATGACCTGACTAGAGTTGGGGACCaacccggg
ggtactagggttacGAGTTGACAGGGGATACCGCCCGACTTGGACCCTTG
GATatacccttaccgggactaaaaaggagaaaacaaaggaaaactttgtg
aattttacgacacttATTGCCCTTATTGAGACAAATTTGACCGAATTCcg
atctttccgggggtaaaaagatgaaatttttttatttctccgacccttaa
agggactgaaatttgatcttctgattttttccgacccttagccggacttt
ggaaatccgcaaaaaaggtacccttaaagggcggcacataccgtaccctc
catttgcctaagtacccccctccTAGGGGGACCAATAGTTGGCGATGAAT
AATAAACCTTAAACAACCTTGCACCATCCTTACAAAGGGTCATGATGTTT
CAATATTATTTTGCTGACGCAATTGTTTCCCTATGTTCATGGTTTCCCAT
ACGTCATAATGGTTTTTAGTAAACTGTGAAATTTTCCTTCACCGTCTATA
TTTAACAAGCCTGCTCGAGCTAAAACAGATACTTTACAAATGGAAAATTA
ACAGAGTGGTCTATCTTAAAAGTGTCGAACAGAACTACGGGGTAGTCAAA
TTGTTAATCGCAATATTTGGACAAAAGTTtcattttacaaaagaaatctt
gGCTTGTTTCGAACGATTAAAGGAACAATCAATTCAGGGAAAAGAACAAA
ATGGTTTTATCAAAGACAACGATGttcatttttactttatttttctgTAG
TATTATACAGCTCCAAGGACGAAGAATCGATGTACAGCCAGCGAAACCGA
AACTTCAGTTGGAAAAAATCCTGAAGCCAATAATATGCCCTCAAGATGTG
GGATGTCGGTATAATCCAAAAACCGgaaaaactgaaattttctCGATATG
TCGAAAGGATCTTTGCACCAAACATAaatgtccaaagcaaaagaagtGTG
TGGTTATGCTACTTGGTTGTGTTCCAGTCTGTATTCGTGATCAAAAACGT
CAGTAATATACACCCGATCGTCCTTACGTATCGttgttttaaccctattc
aacctaggcttttaggggcggtgcagaactaggggggggggcttttcctg
taccaccccttaacttttgatctagtgggtctttttggatgaaatttggc
acacaagatccttgtcacgtaaggtaactttcgacaagaaatttttttga
agacgtccttcatcatgcccaaagtgagcaaaaaccggaaatttcctttg
ttcttataaataactattgtattctaacaaaagctttagaaaaaagttgc
ctgag
Run BLAST on NCBI

protein sequence of TCONS_00058544-protein

>TCONS_00058544-protein ID=TCONS_00058544-protein|Name=TCONS_00058544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MVLSKTTMFIFTLFFCSIIQLQGRRIDVQPAKPKLQLEKILKPIICPQDV
GCRYNPKTGKTEIFSICRKDLCTKHKCPKQKKCVVMLLGCVPVCIRDQKR
Q
Run BLAST on NCBI

transcript from alignment at scaffold_311:711792..720771-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058544 ID=TCONS_00058544|Name=TCONS_00058544|organism=Clytia hemisphaerica|type=transcript|length=8980bp|location=Sequence derived from alignment at scaffold_311:711792..720771- (Clytia hemisphaerica)
TAGATTTCGACCATGATTAAAGATATAGCTTATAGGAAATAAAATCGCAT
AAATTCTTTGTTTTTAAGGTCAACGTGCGTCACCCTTTGGATGCTAAAAA
TTGAGAACAGTTCAAGAAATGACCTGACTAGAGTTGGGGACCAACCCGGG
GGTACTAGGGTTACGAGTTGACAGGGGATACCGCCCGACTTGGACCCTTG
GATATACCCTTACCGGGACTAAAAAGGAGAAAACAAAGGAAAACTTTGTG
AATTTTACGACACTTATTGCCCTTATTGAGACAAATTTGACCGAATTCCG
ATCTTTCCGGGGGTAAAAAGATGAAATTTTTTTATTTCTCCGACCCTTAA
AGGGACTGAAATTTGATCTTCTGATTTTTTCCGACCCTTAGCCGGACTTT
GGAAATCCGCAAAAAAGGTACCCTTAAAGGGCGGCACATACCGTACCCTC
CATTTGCCTAAGTACCCCCCTCCTAGGGGGACCAATAGTTGGCGATGAAT
AATAAACCTTAAACAACCTTGCACCATCCTTACAAAGGGTCATGATGTTT
CAATATTATTTTGCTGACGCAATTGTTTCCCTATGTTCATGGTTTCCCAT
ACGTCATAATGGTTTTTAGTAAACTGTGAAATTTTCCTTCACCGTCTATA
TTTAACAAGCCTGCTCGAGCTAAAACAGATACTTTACAAATGGAAAATTA
ACAGAGTGGTCTATCTTAAAAGTGTCGAACAGAACTACGGGGTAGTCAAA
TTGTTAATCGCAATATTTGGACAAAAGTTTCATTTTACAAAAGAAATCTT
GGCTTGTTTCGAACGATTAAAGGAACAATCAATTCAGGGAAAAGAACAAA
ATGGTTTTATCAAAGACAACGATGTTCATTTTTACTTTATTTTTCTGTAG
TATTATACAGCTCCAAGGTTGGTAGGTTTCTTTCTCGTGCGTATTATAAT
ATCCCTTTACTTTAAAGTGAATTTCTATATATTTCGTATGACTTGGAAAA
ATGATGCTATTTTTATGACAAATATAATAGGTCAAAAACTACTCGAAATG
GGGAAAGCGTTCCAAATAGGGTGAAGAAATTTCACTAAAATATTTATTCA
ATATAAAGTTATGATACAAAGTTGATAAGTGATTGACCCCAAAAAACAGG
AGAAAACAGCTTATAACTTTGTTTGATATCTTTTGACTGAATAATTATTT
TTGAGAAATTTTTTCACAGTGATGACGTTCTACAATGAAAAGGAGTCACT
TCAGTGAAAATGATAGTTATAGCACCTTTCTACAAGATCTTCATTTTTTT
CTTCTTCATTTTCATCTTCATTTTTAGAATTTTTTTATAAATTTTTTTAT
TCCAAATTGTTCCACTCACTAATATCTTTCCAACGATACCAAATTTATAA
AGATTGAGGAATTCCTTCAAAAGTTATAGGTCAATGAAAAAAGAGTGAAC
ACTTATCGTGAATAGACTTTAGTCTTTCTTTTAGGCTTTCTTTTGTTTGA
TATTGATAGTATCTTATCTGCCATATTTTGAACTAAACAGGACGAAGAAT
CGATGTACAGCCAGCGAAACCGAAACTTCAGTTGGAAAAAATCCTGAAGC
CAATAATATGCCCTCAAGATGTGGGATGTCGGTATAATCCAAAAACCGGA
AAAACTGAAATTTTCTCGAGTAAGTCTAACATNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNGGGACCAATAGTTGGCGATGAATAATAAACCTTA
AACAACCTTGCACCATCCTTACAAAGGGTCATGATGTTTCAATATTATTT
TGCTGACGCAATTGTTTCCCTATGTTCATGGTTTCCCATACGTCATAATG
GTTTTTAGTAAACTGTGAAATTTTCCTTCACCCTCTATATTTAACAAGCC
TGCTCGAGCTAAAACAGATACTTTACAAATGGAAAATTAACAGAGTGGTC
TATCTTAAAAGTGTCGAACAGAACTACGGGGTAGTCAAATTGTTAATCGC
AATATTTGGACAAAAGTTTCATTTTACAAAAGAAATCTTGGCTTGTTTCG
AACGATTAAAGGAACAATCAATTCAGGGAAAAGAACAAAATGGTTTTATC
AAAGACAACAATGTTCATTTTTACTTTATTTTTCTGTAGTATTATACAGC
TACAAGGTTGGTAGGTTTCTTTCTCGTGCTTATTATAATATCCCTTTACT
TTAAAGTTAATTTCTATATATTTCGTATGACTTGGAAAAATGATGCTATT
TTTATGACAAATATGATAGGTCAAAAACTACTCGAAATGGGGAAAGCGTT
CCAAATAGGATGAAGAAATTTCACTAAAATATTTATTCAATATAAAGTTA
TGATACAAAGTTGATAAGTGATTGACCCCAAAAAACAGCAGAAAACAGCG
TTATTAGACGTCAATCAGCTTAAAACTTTGTTTGATATCTTGACTGAATA
ATTATTTTTGAGAAATTTTTTCACAGTGATGACGTTCTACAATGAAAAGG
AGTCACTTCAGTGAAAATGATAGTTATAGCACCTTTCTACAAGATCTTCA
TTTTTTTCTTCTTCATTTTCATCTTCATTTTTAGAATTTTTTTATAAATT
TTTTTATTCCAAATTGTTCCACTCACTAATATCTTTCCAACGATACCAAA
TTTATAAAGATTGAGGAATTCCTTCAAAAGTTATAGGTCAATGAAAAAAG
AGTGAACACTTATCGTGAATAGACTTTAGTCTTTCTTTTAGGCTTTCTTT
TGTTTGATATTGATAGTATCTTATCTGCCATATTTTGAACTAAACAGGAC
GAAGAATCGATGTACAGCCAGCGAAACCGAAACTTCAGTTGGAAAAAATC
CTGAAGCCAATAATATGCCCTCAAGATGTGGGATGTCGGTATAATCCAAA
AACCGGAAAAACTGAAATTTTCTCGAGTAAGTCTAACATCGCAGCTCTTT
ATTTCCAAAATTAAGGTATGTGTACACCTTTTTTCCGATTTTTTGTCAAA
AATTTTTTTTTCAGTCAAAGTGGAAGAAAAGTTACTGGATTTCATTTTGG
TAAAATCGCGATTATAAATTTTTTTTTGATCCAGAGTTATAACCATTTAA
ATTTCAAAACAAAGTTCGTCTTATGATGGATTATTTACTCAAATAATTGT
CTCTTTCGGAAACAACAAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNTGTTGCGCCAAACTAACAAAAATCATGTAATTG
GCTTGCGCAAAGTCCATTTTGACTCTTTATTCACCAAATCTTGGGCATAT
TTCATTTCAGTTCACTCAATTAAATATTATCATGCATTTTCAATCAAATG
GAGTCAGTTTCTGACTATCAATTAAGGGTTTTTTTATGTTGTCATGTCGG
TCAAGGTGCGAGGTCTGCGCGACCGGACCGGGCAACCGGACCGGTTGCTC
ATACCAGATTTCAACCCTCGCGAAGCCATACAAGTACACCATTTATTGTA
ATGTGGACGTCTAATTGATGGTTCAATGGAATTTTCTGGTTACTCTAATT
AATCATATCAGTAGTATATCACAAAATAGTTTGAATGTCAAGAGGAGCTG
CAGAAATCCTTCCAGAAAATCACATAACGACAAATGGTTTTGTACCGGAT
AGCCAACCTCTTCAGGATATTAACAACACAAAAGCTTGTCCAAATACATC
CAAGAACTCTTCAACAACAAATTACAATAAGAATAATCCATNNNNNNNNN
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NNNNNNNNNNNNNNNNNNTATTGAGCGATTAAGGCCATAGCAACCGATTG
AAATTTGGTTGCTAGGGGTTTTTTTGGACTACCATGGTACACAAAAATGC
TTCCTGCGACCCAAATACTTGAGATACGGGTTTTAAATTTTCAAGGCACT
CTCTGGAATGGTTGCAGATTCGAAAACGCCCAAAAAACAAAAATTTATAA
TTTTTTCGGTAACTTTTCAAATCTCAGGTAACTACCACCTTAAAAAAAGA
GAATGTGTCAAGAAAGGTGAACACATACCTTAAAGTTTGTCTCGTAATAG
TTTGCAGGGGAAACAAAAAGAATAGATACTTATTTTTACACCGACTTTAA
GAACGACTCAAAACAGCGAATTTCTTAGGAAATAAAGCACAAAATGATTA
AATTAAGAACATTTTAAGAACATTTTTAGGTTCAAAACTCAAAAAGTAAA
GAACATTAATAAGCTTTAAAAAATATTTTGATGTTCTTATAAAAGACGTG
CAGAACCTTTGTATAATTCGAATGTCTCTTCACTCGAACGATCACCTTAC
TCGTTAGAGGTAACATTTCTTAATAAACACACCTAATAAATAAACCCCTG
CCAATCTAACCTGCTCCATAACTCATATGTTACTCTAAAAGTTCCCTAAC
AGTTTTTCTGTCCCTTGGAGTAATATTATAACACTCTTTCTCCACAGACC
CGGTATAATTTTTCCAGCCAGTAGGGGTGAAAATAACGGACTGAAACTCA
GTGGGAATTGATATTCCCATATCTTTTATGGCTGGGGATTTGAATTCTTT
TGTTTTCAAGTCAGAAAATCCAGTGGGGATAGGAAAAACAGTGAGGATTG
GTTTAATTGATTCTTTTCAGTGGGGACAAAAATTGAAGGGTAATATTCCA
CCGGGGACGATATTTTGGCCAATTTTTCAAGCGGGAAGGGGTCCCAGTGA
ATCCGTGAGAAGGGGGTGTATTAAGCTAAGTTTTGTCTTCTCTCTGACCA
TTCGAGACGAAGACTCTTTCATTGAATACCTGAGACACATCATTCCAAAT
ATCTCTCGTTTATGGTTTCAGTATGTCGAAAGGATCTTTGCACCAAACAT
AAATGTCCAAAGCAAAAGAAGTGTGTGGTTATGCTACTTGGTTGTGTTCC
AGTCTGTATTCGTGATCAAAAACGTCAGTAATATACACCCGATCGTCCTT
ACGTATCGTTGTTTTAACCCTATTCAACCTAGGCTTTTAGGGGCGGTGCA
GAACTAGGGGGGGGGGCTTTTCCTGTACCACCCCTTAACTTTTGATCTAG
TGGGTCTTTTTGGATGAAATTTGGCACACAAGATCCTTGTCACGTAAGGT
AACTTTCGACAAGAAATTTTTTTGAAGACGTCCTTCATCATGCCCAAAGT
GAGCAAAAACCGGAAATTTCCTTTGTTCTTATAAATAACTATTGTATTCT
AACAAAAGCTTTAGAAAAAAGTTGCCTGAG

Coding sequence (CDS) from alignment at scaffold_311:711792..720771-

>TCONS_00058544 ID=TCONS_00058544|Name=TCONS_00058544|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_311:711792..720771- (Clytia hemisphaerica)
TATGTCGAAAGGATCTTTGCACCAAACATAAATGTCCAAAGCAAAAGAAG
TGTGTGGTTATGCTACTTGGTTGTGTTCCAGTCTGTATTCGTGATCAAAA
ACGTCAGTAAGACGAAGAATCGATGTACAGCCAGCGAAACCGAAACTTCA
GTTGGAAAAAATCCTGAAGCCAATAATATGCCCTCAAGATGTGGGATGTC
GGTATAATCCAAAAACCGGAAAAACTGAAATTTTCTCGAATGGTTTTATC
AAAGACAACGATGTTCATTTTTACTTTATTTTTCTGTAGTATTATACAGC
TCCAAGTATGTCGAAAGGATCTTTGCACCAAACATAAATGTCCAAAGCAA
AAGAAGTGTGTGGTTATGCTACTTGGTTGTGTTCCAGTCTGTATTCGTGA
TCAAAAACGTCAGTAAGACGAAGAATCGATGTACAGCCAGCGAAACCGAA
ACTTCAGTTGGAAAAAATCCTGAAGCCAATAATATGCCCTCAAGATGTGG
GATGTCGGTATAATCCAAAAACCGGAAAAACTGAAATTTTCTCGAATGGT
TTTATCAAAGACAACGATGTTCATTTTTACTTTATTTTTCTGTAGTATTA
TACAGCTCCAAGTATGTCGAAAGGATCTTTGCACCAAACATAAATGTCCA
AAGCAAAAGAAGTGTGTGGTTATGCTACTTGGTTGTGTTCCAGTCTGTAT
TCGTGATCAAAAACGTCAGTAAGACGAAGAATCGATGTACAGCCAGCGAA
ACCGAAACTTCAGTTGGAAAAAATCCTGAAGCCAATAATATGCCCTCAAG
ATGTGGGATGTCGGTATAATCCAAAAACCGGAAAAACTGAAATTTTCTCG
AATGGTTTTATCAAAGACAACGATGTTCATTTTTACTTTATTTTTCTGTA
GTATTATACAGCTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036878XLOC_036878Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058544-proteinTCONS_00058544-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058544-exon-scaffold_311-1575043694:719855..720771TCONS_00058544-exon-scaffold_311-1575043694:719855..720771Clytia hemisphaericaexon
TCONS_00058544-exon-scaffold_311-1575043694:717096..717224TCONS_00058544-exon-scaffold_311-1575043694:717096..717224Clytia hemisphaericaexon
TCONS_00058544-exon-scaffold_311-1575043694:711792..712200TCONS_00058544-exon-scaffold_311-1575043694:711792..712200Clytia hemisphaericaexon
TCONS_00058544-exon-scaffold_311-1510915933:719855..720771TCONS_00058544-exon-scaffold_311-1510915933:719855..720771Clytia hemisphaericaexon
TCONS_00058544-exon-scaffold_311-1510915933:717096..717224TCONS_00058544-exon-scaffold_311-1510915933:717096..717224Clytia hemisphaericaexon
TCONS_00058544-exon-scaffold_311-1510915933:711792..712200TCONS_00058544-exon-scaffold_311-1510915933:711792..712200Clytia hemisphaericaexon
TCONS_00058544-exon-scaffold_311-1491911889:719855..720771TCONS_00058544-exon-scaffold_311-1491911889:719855..720771Clytia hemisphaericaexon
TCONS_00058544-exon-scaffold_311-1491911889:717096..717224TCONS_00058544-exon-scaffold_311-1491911889:717096..717224Clytia hemisphaericaexon
TCONS_00058544-exon-scaffold_311-1491911889:711792..712200TCONS_00058544-exon-scaffold_311-1491911889:711792..712200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:711792..720771 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.027786	0.0804952	0	0.194081	0.0711253	0.19089	0.683815	0.851931	0.999945	1.09423	1.09553	0.634471	0.764917	0.576095	0.29655	0.267876	2.41776	3.22808	1.38343	3.03655	15.3867	17.806	2.24966	3.84439	2.12807	3.19706	0.193574	0.16736	0.310103	0.126034
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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