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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058556 ID=TCONS_00058556|Name=TCONS_00058556|organism=Clytia hemisphaerica|type=transcript|length=1484bp
tttttgatcacatttttttggtatttataAATTGTGCTTGATGCGTTGTT
GGCATCATTTCATTCTTGACTAGTCATATGTTCACATCTTAATACTATTT
GTAAACGAAGCAATCTTCATCAACAGTTAATTAACAGaaaccTTTGATAC
AGGTACACCAAAACAACAACCGAAATCAAAATCGATCTTCATCCAAACCG
AATCGAAAGAATGGCATTACCAAATCATAAAAACAGATTTACTTTTATCT
TGATAACAATTGCAATGATATATTATAGCCAGGCAGTACCCTCAACTCCG
AATGAAACtgataagaatatccaaaaagaTCCCGTAGCTAGTCCTATAAT
ATCAACAGGAAAAGAAACATGTTTTTCTGTGCCGTACAAGCAAGATATCA
TTGTTCCCGGTTGTGCTGTCAAGACCATAGACAATCGTTACTGCAACGGT
AATTGCGTGTCAGGATACGTTCCGGAGAATGGCGTAAATGGCCGGTATAA
ATGCTCCTCGTGTCAGCCGTCTAAGACAACTCGAAAAATGATTGAGTTGA
ATTGTCGTGACGGAAGAACGAAGCTTGTGgaagttgaaatttttgaaagt
tgtaAATGTCAGCAAAGTAGTTGTCAGGTGTCAGCACGTAAAAATATTAA
AGATAGTGAGACAACTATGAAGTCGTcaacaaatgaaaagaaatttgatc
cGGTGCGGCCATGCCGTTATATTTGCCGTGAATGTCGGAAATCTCGTCGA
GATTATGACGTTTTACAAACAAAAAAGGAGAAGAATGAATATTTAGTGAA
ATCATGTAGAACTGTGGAATGCAGAAAACGAATTTTGAACCACGAGGATG
TAACTGAGTTAGCTAAAGTtcaaaagaaacttaaaaaagCTGTTTGTAAG
GAGTGTAAACtctgcaaaaaacgtaaaagagAAAAAGCAAATGCATAGAg
gatggacttgaaatttgtgATATTCAAACCGGGGGACTGGCACTTCCATA
ATGGCTGTCAAAATCTCCTTTCTCCTAACCACCGGGGGAGATTTTCTATT
GTTATTGATTTCATTACGTATGTGCTGGTCACGTGCNCAACCACCGGAGG
AGATTTTCTATTGTTATTGATTTCATTACGTATGTGCTGGTCACGTGCAA
TCatagttattttataaaattttataagatttcccaaaatatttttttgt
acatattaaaaagtatttgttatttataattttgatgagagatttgatat
tttatttttaaaagaaatttcaaaaaaaatatattcttgaAACTATatga
ttttaaaaagtattcacacaaaaattcatcagCGATGTGAGCAAGAGATA
CAATGAATGGTAAAAAATGGACCGCGTCACATTTATTTAAAAACtgatgt
aaatatttttcattttattacaaTGAACCACTGGACTTGTCGTCGATATT
TATGAACAGTTTTCTTGTGTCATATTTTTTCTCT Run BLAST on NCBI transcript from alignment at scaffold_311:952928..955950- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058556 ID=TCONS_00058556|Name=TCONS_00058556|organism=Clytia hemisphaerica|type=transcript|length=3023bp|location=Sequence derived from alignment at scaffold_311:952928..955950- (Clytia hemisphaerica)
TTTTTGATCACATTTTTTTGGTATTTATAAATTGTGCTTGATGCGTTGTT
GGCATCATTTCATTCTTGACTAGTCATATGTTCACATCTTAATACTATTT
GTAAACGAAGCAATCTTCATCAACAGTTAATTAACAGGTAAGCAAAAGGT
ACTTTTAGTTTATAAGATTAATTCATTTTATTTGGGATACATAATGATTA
ATACTTTTCAAAAAGCTATAGCTTGGTGCAGCCTAGGATGCTCAGTCCCA
GTGGAACAACGGTGTAAAAGTGAAGAGGCTGAAGGCTCAAATGAGATAAA
ATTCGCTAGGAATTTAAGAAAAAATTATCATTTGTTCAAAAGCGAGGAGG
TTGACGTCTCCCCAGTCTTCCCGCTTCCGCTGGGCCTGATGCTGCCCTCC
CTCCACTGACGGACTCGTGATCCTTATGTTCTAGGTCTGCGATTCAAACT
AAGTGTAACTGCATCGCAACGAGCCAGTTACCACCCGTAGCGTATAGATT
ATAAGGGAAGGACGCGATTATTTTTCGGAGAACAAAAGGGGAATTTTAAA
TCTTTTAAACGTCTCAGGCTTGGGGAGTGGGTACGGGCATAAACACTTCA
AAGTCGAAAGAACATTTAAAAAAATACTCTACAAGGTAGACTTAATTTAC
ATTTTGGGAAGATCTAGCAAATTCTGTCACACAAATGCAAGGCTTAATTT
AAATTTTGGCATACTAGAAAACACTGATTTTAAAATTTTCTTTAACTATA
GTCTGCCTATAGTTCCTTCAAAAGAAGCAAGAAGCAGGACTAAACTTAGA
AAGATTACTCATTTCAATATTTTTCACGGCATTGAACGCCTCGCTTTTAT
TGTTCTGTTTTCTCCGTCTTTTTCCATCCTGATTTTACCACGTCCTTGTT
TTTTATATTATATGAAAAAAATGGCATAAGGAATTTCCTTCGAACTTATT
TTCGTACCGTAGTTTTCCATTTGATATTTTCAAGTAAAGCGCAAAAGTAT
AGTTTTCTACTTGAAAAATCATGTGTTTTTTAAAAAACCAGCCCCTTTTC
CGAAAGCAAGAAGAACATGCCGACCTTTCACAGGATGTCTGTAGCACGGC
ATGTTACGAAACTTATTTCAATAGATTGACTGTAATTGCTGACGTGCATT
GAAAAATCAATAAATCTTGTTGACACACTTTTTGAAAAAACCTCTCAAAG
CATTGTCTTGTGAAAGTGAAAGGTAGCCCTGCCCTAAACCAGAAGTAAAA
CCACATTAAAATCATTCTGAAGACATAACTAGGTCACAGTGTGGATGTAA
ACCACACTGAAACGACCGCCTTCCATCACGCAATCACGCATCACGCTCGC
GAAAGAGCGCGTGCACATTATTAACGCTTACATGTCATGTACCAGATAAA
CATGTCATCTCCAGTACATTCTAGATTATTCATTGAAAACAGATTACAAT
ATAGTCATTTTTCATGTCTCGATTATTCAATTCCGAATAAAAGACATTCA
GGGAAAAAAAAGAGAAACACCTGGGTAATCTAGTAATCCGAAAGTAAATG
GTAGACAAAGTAATGAGCCAAGGCAAAACGAGATTAGCGTACCACTATGA
AAGAAACCGCCTCCGGCGGTTGATTATACAATTCAAAAGTACAAGAAGTC
AATAATTTCATTCATTTATTTTTTAGAAACCTTTGATACAGGTACACCAA
AACAACAACCGAAATCAAAATCGATCTTCATCCAAACCGAATCGAAAGAA
TGGCATTACCAAATCATAAAAACAGATTTACTTTTATCTTGATAACAATT
GCAATGATATATTATAGCCAGGCAGTACCCTCAACTCCGAATGAAACTGA
TAAGAATATCCAAAAAGATCCCGTAGCTAGTCCTATAATATCAACAGGAA
AAGAAACATGTTTTTCTGTGCCGTACAAGCAAGATATCATTGTTCCCGGT
TGTGCTGTCAAGACCATAGACAATCGTTACTGCAACGGTAATTGCGTGTC
AGGATACGTTCCGGAGAATGGCGTAAATGGCCGGTATAAATGCTCCTCGT
GTCAGCCGTCTAAGACAACTCGAAAAATGATTGAGTTGAATTGTCGTGAC
GGAAGAACGAAGCTTGTGGAAGTTGAAATTTTTGAAAGTTGTAAATGTCA
GCAAAGTAGTTGTCAGGTGTCAGCACGTAAAAATATTAAAGATAGTGAGA
CAACTATGAAGTCGTCAACAAATGAAAAGAAATTTGATCCGGTGCGGCCA
TGCCGTTATATTTGCCGTGAATGTCGGAAATCTCGTCGAGATTATGACGT
TTTACAAACAAAAAAGGAGAAGAATGAATATTTAGTGAAATCATGTAGAA
CTGTGGAATGCAGAAAACGAATTTTGAACCACGAGGATGTAACTGAGTTA
GCTAAAGTTCAAAAGAAACTTAAAAAAGCTGTTTGTAAGGAGTGTAAACT
CTGCAAAAAACGTAAAAGAGAAAAAGCAAATGCATAGAGGATGGACTTGA
AATTTGTGATATTCAAACCGGGGGACTGGCACTTCCATAATGGCTGTCAA
AATCTCCTTTCTCCTAACCACCGGGGGAGATTTTCTATTGTTATTGATTT
CATTACGTATGTGCTGGTCACGTGCNCAACCACCGGAGGAGATTTTCTAT
TGTTATTGATTTCATTACGTATGTGCTGGTCACGTGCAATCATAGTTATT
TTATAAAATTTTATAAGATTTCCCAAAATATTTTTTTGTACATATTAAAA
AGTATTTGTTATTTATAATTTTGATGAGAGATTTGATATTTTATTTTTAA
AAGAAATTTCAAAAAAAATATATTCTTGAAACTATATGATTTTAAAAAGT
ATTCACACAAAAATTCATCAGCGATGTGAGCAAGAGATACAATGAATGGT
AAAAAATGGACCGCGTCACATTTATTTAAAAACTGATGTAAATATTTTTC
ATTTTATTACAATGAACCACTGGACTTGTCGTCGATATTTATGAACAGTT
TTCTTGTGTCATATTTTTTCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058556-exon-scaffold_311-1575043694:955814..955950 | TCONS_00058556-exon-scaffold_311-1575043694:955814..955950 | Clytia hemisphaerica | exon |
| TCONS_00058556-exon-scaffold_311-1575043694:952928..954274 | TCONS_00058556-exon-scaffold_311-1575043694:952928..954274 | Clytia hemisphaerica | exon |
| TCONS_00058556-exon-scaffold_311-1510915933:955814..955950 | TCONS_00058556-exon-scaffold_311-1510915933:955814..955950 | Clytia hemisphaerica | exon |
| TCONS_00058556-exon-scaffold_311-1510915933:952928..954274 | TCONS_00058556-exon-scaffold_311-1510915933:952928..954274 | Clytia hemisphaerica | exon |
| TCONS_00058556-exon-scaffold_311-1491911889:955814..955950 | TCONS_00058556-exon-scaffold_311-1491911889:955814..955950 | Clytia hemisphaerica | exon |
| TCONS_00058556-exon-scaffold_311-1491911889:952928..954274 | TCONS_00058556-exon-scaffold_311-1491911889:952928..954274 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:952928..955950 - |
Blast
The following BLAST results are available for this feature:
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