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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058562 ID=TCONS_00058562|Name=TCONS_00058562|organism=Clytia hemisphaerica|type=transcript|length=1814bpRun BLAST on NCBI protein sequence of TCONS_00058562-protein >TCONS_00058562-protein ID=TCONS_00058562-protein|Name=TCONS_00058562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=425bp MLTTSTIDRQKSFLQRRRDLNPNNPNINVMAPDRTDILTQGQKSAFREVFRun BLAST on NCBI transcript from alignment at scaffold_311:1028818..1041815- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058562 ID=TCONS_00058562|Name=TCONS_00058562|organism=Clytia hemisphaerica|type=transcript|length=12998bp|location=Sequence derived from alignment at scaffold_311:1028818..1041815- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_311:1028818..1041815- >TCONS_00058562 ID=TCONS_00058562|Name=TCONS_00058562|organism=Clytia hemisphaerica|type=CDS|length=11502bp|location=Sequence derived from alignment at scaffold_311:1028818..1041815- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058562 vs. Swiss-Prot (Human)
Match: SPT21 (Spermatogenesis-associated protein 21 OS=Homo sapiens GN=SPATA21 PE=2 SV=3) HSP 1 Score: 81.6481 bits (200), Expect = 3.019e-16 Identity = 65/198 (32.83%), Postives = 94/198 (47.47%), Query Frame = 1
Query: 535 LTQGQKSAFREVFDLFDSNGGGSIDADELDEALRSADIQVTKDEINEVLSSMDKDGNGEIDFEEFLQLMTNTERFLESVICKEQEAEATQQREVLLFEALTQFMRKSALHS--INEIVGYYHQKYKKVQTPHVIRHYAAGARL--------------IGLSEQQIRRHLEQLRRSSMSNN-KSPYAQPPYAFMHLCRQ 1077
LT Q+ AFR F++F NG G +DA L L VT ++ + L S D +G+G +DF++FL +MT+T RF SV A LLFE L+ + AL + EI YY +K K+ T AA RL + E+++ L +L++ + + N +SPYAQ P LC Q
Sbjct: 218 LTLKQEEAFRSYFEIF--NGPGEVDAQSLKNILLLMGFSVTLAQVEDALMSADVNGDGRVDFKDFLAVMTDTRRFFCSVEQNALSDMAPHNPHTLLFEILSLLVEMLALPEAVLEEITNYYQKKLKE-GTCKAQEMEAAVGRLRLQKLPYNPQQEESSEVPERKVLSILSRLKQQNYAPNLQSPYAQVPCIL--LCPQ 410 The following BLAST results are available for this feature:
BLAST of TCONS_00058562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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