TCONS_00058572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058572
Unique NameTCONS_00058572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length998

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058572 ID=TCONS_00058572|Name=TCONS_00058572|organism=Clytia hemisphaerica|type=transcript|length=998bp
aaaaacaaattttcttttaaggATATTTACAGACCTTTATCAAGATCTGT
ATCAGTATGTATTATGTACATAAAATTTAAGAGGTATTTTCATAAGGTTA
TTTATGAAGACTTTATCAAAAAAGCAAGACAATCCATGACAATTATTCAC
TATCGGCTATCATTGAAAATCAATTGGTGTGATGGTACCCATCCACATCT
TTGTAAGAAAGATACTTAAAATCTACACTGCCTCCTTTAGCTACAGGTGC
ACAAGTAAATAAACCAAGTTTAGCTTGCTTATTATCTGTATTATTCAGGT
GGCATATTCTTATGAAAGTCCATTTATCCTCTTCCTGCTTCCTAACTTCA
ACAACATAGTCAGAATTTAGTTTGTACAACCTGATTGCTAAATTTGAAGA
GTCATAATCTTGAGTAGACCAGTCACTATAATCATTAGTTACAACACAAC
TTAACCGTTTCACACCATCTGCAAATTCAATTCCTGTTTTAATCCAATGC
TTTTCATCCAGGTAAACCATTAGACCCCCTTGATCAAACTGATTGATTGC
ACTCAAGTTGAATTCAGTTTCTACCATAACATTTGCATTAATTGGGACTT
CTTTGTACAACACATGGCCATTGTTGTTAATCATCTCAGGTTTGTAGTAT
GTTTTTCGCCAAAAGTCATGCTTTTCATCTGGGAAGACAGTCAGCCCACC
ATTATTAAATTCCCATTTAGAGGGTTCATTCATCCATTTTAAATCCCCAA
GTTCCGATTTTGAGAAGTCCATCATTTTAGGGTTTTTTTAAAACACTAAA
TGTAATGAATTGGTCTTCTTCAAAAATGTAGGTAAGATAAGATAATGTAA
GATTAATTTGATAATTTGTTTACAAGCATGTGACCCCCAGGACTAGGCAA
TTCTTAAAAGTACTTGAAAATCAGACCTGTACTCAATCAAACCTTAAAAC
CTTTTGGGAGGtttttatcattcaaaaatgGCCTGTAAAAAAATATCA
Run BLAST on NCBI

transcript from alignment at scaffold_311:1163445..1164502-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058572 ID=TCONS_00058572|Name=TCONS_00058572|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at scaffold_311:1163445..1164502- (Clytia hemisphaerica)
AAAAACAAATTTTCTTTTAAGGATATTTACAGACCTTTATCAAGATCTGT
ATCAGTATGTATTATGTACATAAAATTTAAGAGGTATTTTCATAAGGTTA
TTTATGAAGACTTTATCAAAAAAGCAAGACAATCCATGACAATTATTCAC
TATCGGCTATCATTGAAAATCAATTGGTGTGATGGTACCCATCCACATCT
TTGTAAGAAAGATACTTAAAATCTACACTGCCTCCTTTAGCTACAGGTGC
ACAAGTAAACAAACCAAGTTTAGCTANAAAATCCACACTGCCTCCTTTAG
CTACAGGTGCACAAGTAAATAAACCAAGTTTAGCTTGCTTATTATCTGTA
TTATTCAGGTGGCATATTCTTATGAAAGTCCATTTATCCTCTTCCTGCTT
CCTAACTTCAACAACATAGTCAGAATTTAGTTTGTACAACCTGATTGCTA
AATTTGAAGAGTCATAATCTTGAGTAGACCAGTCACTATAATCATTAGTT
ACAACACAACTTAACCGTTTCACACCATCTGCAAATTCAATTCCTGTTTT
AATCCAATGCTTTTCATCCAGGTAAACCATTAGACCCCCTTGATCAAACT
GATTGATTGCACTCAAGTTGAATTCAGTTTCTACCATAACATTTGCATTA
ATTGGGACTTCTTTGTACAACACATGGCCATTGTTGTTAATCATCTCAGG
TTTGTAGTATGTTTTTCGCCAAAAGTCATGCTTTTCATCTGGGAAGACAG
TCAGCCCACCATTATTAAATTCCCATTTAGAGGGTTCATTCATCCATTTT
AAATCCCCAAGTTCCGATTTTGAGAAGTCCATCATTTTAGGGTTTTTTTA
AAACACTAAATGTAATGAATTGGTCTTCTTCAAAAATGTAGGTAAGATAA
GATAATGTAAGATTAATTTGATAATTTGTTTACAAGCATGTGACCCCCAG
GACTAGGCAATTCTTAAAAGTACTTGAAAATCAGACCTGTACTCAATCAA
ACCTTAAAACCTTTTGGGAGGTTTTTATCATTCAAAAATGGCCTGTAAAA
AAATATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036889XLOC_036889Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058572-exon-scaffold_311-1575043694:1164257..1164502TCONS_00058572-exon-scaffold_311-1575043694:1164257..1164502Clytia hemisphaericaexon
TCONS_00058572-exon-scaffold_311-1575043694:1163445..1164196TCONS_00058572-exon-scaffold_311-1575043694:1163445..1164196Clytia hemisphaericaexon
TCONS_00058572-exon-scaffold_311-1510915933:1164257..1164502TCONS_00058572-exon-scaffold_311-1510915933:1164257..1164502Clytia hemisphaericaexon
TCONS_00058572-exon-scaffold_311-1510915933:1163445..1164196TCONS_00058572-exon-scaffold_311-1510915933:1163445..1164196Clytia hemisphaericaexon
TCONS_00058572-exon-scaffold_311-1491911889:1164257..1164502TCONS_00058572-exon-scaffold_311-1491911889:1164257..1164502Clytia hemisphaericaexon
TCONS_00058572-exon-scaffold_311-1491911889:1163445..1164196TCONS_00058572-exon-scaffold_311-1491911889:1163445..1164196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1163445..1164502 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.35281	9.29586	5.80399	5.42925	12.0064	8.43344	7.68875	10.2289	7.72987	5.16282	3.59893	4.6118	4.03719	2.63982	6.00022	7.75439	6.78483	9.03013	2.34216	3.15117	5.08659	5.08936	7.1148	6.23402	5.69674	8.31568	2.77455	2.50046	3.19412	3.66109
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015987UCP022704
IPR009784DUF1349
IPR013320ConA-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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