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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058574 ID=TCONS_00058574|Name=TCONS_00058574|organism=Clytia hemisphaerica|type=transcript|length=1275bp
taccttattggtatatattttcgcgtgttacaaattttcgcgaatcgcga
aaatttttcgaaaaaacgtgtttcgcgtgtattaaatttcgcgattgctg
acttctggaaaattttcgcgtgtattaaatttcgcgattcgctaaactag
gtattttcagaaagtgggaatataaagcaagaaaaagactgattttgctt
gaaacacaacgtttttgatgtaaaaatactaacaaaatactaataaaagt
ttttcgcgtgtatttaatttcgcgattttgtaattttgaaaaatttaaac
agtattaaatttcgcgaaaattgaccaaaaaactcgcgaaaattaagtac
ccgcgaaaatttgtaacacgcgaaaatatataccaataaggtattcgAGT
TTGATTCAAAGACAAACATTTCAAAGAAATCTTTGCTGTACTACTGCAAC
ATATACATTAAGAGATGACAAATCCATCAGTGTCTTAAATGCTGGTTGTA
AAACTAATTCTGCAGGAGAAGTTGGTGAATTAAAAAGTGCAAATGGTGTA
GCAGTATTTGATCCAGAAAAACCTGGTCAATTGACAGTAGGTTTCAGAAC
GCCGCCAAAAGACAACAATAACCCCAATTATAACGTTATCAAACTAGGAC
CAAAAACGCATGGTGAAGAAAACCTATACGAATATTCCGTTATATCAACA
CCAAGTAAAGCATTAATGTGGGTGTTAGCTCGTGATCCCAAAACATTCAA
AGAAAAGTATGATAAAGAGGTACGTGAGTTTCTTGATGCTAATGGATTTA
ATTGGTTCTGGAATCGACCACGTGAAACCTATCAAGGTGACAACTGTAAA
TATCCACCAATGCTGAATGAGGAAACAAACACACCGAATGATTCtacata
aaatttgaattttaattttaatttgattttttatataagaataattGAAT
AATTTTATAATATTGAACTTTTcgtttgattaaaaaatgaaTGATTACAA
TGAGAACCCAATAACAATAACAATACCATTTACAAGATTAGATTTCTGGC
ATAGAATACACCGCCCGCTGagcttgggggggggggctaaatcttatttt
cttgtttggGGCTATTTTTTTTAATGGTAGGCTACCTCGATAGGGGGGCT
ATGTTTTGAGTAATCGAACTGGGGGCTGAGCTGATTATTCATATACTGta
acttttaattttcattttttcatgttttttaagtCTTGCCGAAATACATT
GTCTCAAAATTTAGATGAacttatt Run BLAST on NCBI transcript from alignment at scaffold_311:1249360..1251569- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058574 ID=TCONS_00058574|Name=TCONS_00058574|organism=Clytia hemisphaerica|type=transcript|length=2210bp|location=Sequence derived from alignment at scaffold_311:1249360..1251569- (Clytia hemisphaerica)
TACCTTATTGGTATATATTTTCGCGTGTTACAAATTTTCGCGAATCGCGA
AAATTTTTCGAAAAAACGTGTTTCGCGTGTATTAAATTTCGCGATTGCTG
ACTTCTGGAAAATTTTCGCGTGTATTAAATTTCGCGATTCGCTAAACTAG
GTATTTTCAGAAAGTGGGAATATAAAGCAAGAAAAAGACTGATTTTGCTT
GAAACACAACGTTTTTGATGTAAAAATACTAACAAAATACTAATAAAAGT
TTTTCGCGTGTATTTAATTTCGCGATTTTGTAATTTTGAAAAATTTAAAC
AGTATTAAATTTCGCGAAAATTGACCAAAAAACTCGCGAAAATTAAGTAC
CCGCGAAAATTTGTAACACGCGAAAATATATACCAATAAGGTATTCGAGT
TTGATTCAAAGACAAACATTTCAAAGAAATCTTTGCTGTACTACTGCAAC
ATGTAAGGCTAATCATATTCTTAGCAATTCTCGGATATTATTTCAAAAGT
TATTTACAAACTATTTCTTGAATACTTTAGGCGTACAAACTTTCGCGAGC
AGAAACTTTTGCGAGGACGAAAAATCGCGAAATTCACGACATTTACTTTC
GCGAATTTAACGGAAAAATATTTTTCGCGAGCATTTAAACTTTCGCGAAT
CAAGACGTAAATTGTGAATTTTATTACAGATTTTCTATTTCGTCAAGAAT
TTTTCGCGAGCATAAACTTTCGCGAATGGCCCTTCCTAGAATTTTTAAAG
ACATTTACTTTCGCGAAAAGGGCCAAAATTCGTGAAAATCGCGAAAGTTT
CTGCTCGCGAAAGTTTCTACGCCTAAAGTAGATGCGGTCAGATAGTTTCT
GAAAGTATCCATGTCTGTAAGAGGGGCCATTTCTTGAATATCTATCAGAT
TTTTGCAGATCAATAAAATTTTTAATCGATTCTTATTTTACAGATACATT
AAGAGATGACAAATCCATCAGTGTCTTAAATGCTGGTTGTAAAACTAATT
CTGCAGGAGAAGTTGGTGAATTAAAAAGTGCAAATGGTGTAGCAGTATTT
GATCCAGAAAAACCTGGTCAATTGACAGTAGGTTTCAGAACGCCGCCAAA
AGACAACAATAACCCCAATTGTAAGTACTTGTGCAGGTGTCTGGAAAATT
CCCTAAAATTCCCCTCTTTTGTATTCCCACTTGGAAAATAGACCTTTTGC
TAGTTAGGATGTCCTGTTGAATAATTAAAAACTCCAGCACTAAAACAATG
ATAAGAAAAATTACCTTAAGGGAAGAAATTTTCACTGAATTCAATATCGC
CGTTTTTTGACAAATCCTAACTAGCAAAAGCCTTATTTTCCCTGGTGAAT
TCCCACCCCATATATTTTTGCTCGAAATTTGCTGAGACATTGTATTTTAT
TTATCAAATCGGAAGCTGCGACATGCGAGTGCTTCTTTTAGCCCCGGGAT
AAATTACATATTTGAAATAACGTTTNATTCCCACCCCATATATTTTTGCT
CGAAATTTGCTTAGACATTGTATTTTATTTATCAAATCGGTTTTTTATCT
CTCCCTCCATCCAGATAACGTTATCAAACTAGGACCAAAAACGCATGGTG
AAGAAAACCTATACGAATATTCCGTTATATCAACACCAAGTAAAGCATTA
ATGTGGGTGTTAGCTCGTGATCCCAAAACATTCAAAGAAAAGTATGATAA
AGAGGTACGTGAGTTTCTTGATGCTAATGGATTTAATTGGTTCTGGAATC
GACCACGTGAAACCTATCAAGGTGACAACTGTAAATATCCACCAATGCTG
AATGAGGAAACAAACACACCGAATGATTCTACATAAAATTTGAATTTTAA
TTTTAATTTGATTTTTTATATAAGAATAATTGAATAATTTTATAATATTG
AACTTTTCGTTTGATTAAAAAATGAATGATTACAATGAGAACCCAATAAC
AATAACAATACCATTTACAAGATTAGATTTCTGGCATAGAATACACCGCC
CGCTGAGCTTGGGGGGGGGGGCTAAATCTTATTTTCTTGTTTGGGGCTAT
TTTTTTTAATGGTAGGCTACCTCGATAGGGGGGCTATGTTTTGAGTAATC
GAACTGGGGGCTGAGCTGATTATTCATATACTGTAACTTTTAATTTTCAT
TTTTTCATGTTTTTTAAGTCTTGCCGAAATACATTGTCTCAAAATTTAGA
TGAACTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058574-exon-scaffold_311-1575043694:1251118..1251569 | TCONS_00058574-exon-scaffold_311-1575043694:1251118..1251569 | Clytia hemisphaerica | exon |
| TCONS_00058574-exon-scaffold_311-1575043694:1250450..1250626 | TCONS_00058574-exon-scaffold_311-1575043694:1250450..1250626 | Clytia hemisphaerica | exon |
| TCONS_00058574-exon-scaffold_311-1575043694:1249360..1250005 | TCONS_00058574-exon-scaffold_311-1575043694:1249360..1250005 | Clytia hemisphaerica | exon |
| TCONS_00058574-exon-scaffold_311-1510915933:1251118..1251569 | TCONS_00058574-exon-scaffold_311-1510915933:1251118..1251569 | Clytia hemisphaerica | exon |
| TCONS_00058574-exon-scaffold_311-1510915933:1250450..1250626 | TCONS_00058574-exon-scaffold_311-1510915933:1250450..1250626 | Clytia hemisphaerica | exon |
| TCONS_00058574-exon-scaffold_311-1510915933:1249360..1250005 | TCONS_00058574-exon-scaffold_311-1510915933:1249360..1250005 | Clytia hemisphaerica | exon |
| TCONS_00058574-exon-scaffold_311-1491911889:1251118..1251569 | TCONS_00058574-exon-scaffold_311-1491911889:1251118..1251569 | Clytia hemisphaerica | exon |
| TCONS_00058574-exon-scaffold_311-1491911889:1250450..1250626 | TCONS_00058574-exon-scaffold_311-1491911889:1250450..1250626 | Clytia hemisphaerica | exon |
| TCONS_00058574-exon-scaffold_311-1491911889:1249360..1250005 | TCONS_00058574-exon-scaffold_311-1491911889:1249360..1250005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:1249360..1251569 - |
Blast
The following BLAST results are available for this feature:
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