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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058587 ID=TCONS_00058587|Name=TCONS_00058587|organism=Clytia hemisphaerica|type=transcript|length=2920bp
GCacgatttttcaaaacaatccaCCAAAAGACCATCAATGATTATGTGAT
ATTTTTATAGCAGCCCTCACACACCCCCGGGATATTGAGAATCGAATAAC
AGGAAGGCATTAAATCTatggtatttttcaaaatataattcaTCAAAATG
ATAACGCATGTATGAaggtaataaaataaaatacgtAAACAAATTACCTG
GTAAAAAACCTTCCTGGGGGAGGGAACGGAGGTCGTAAAAATCATTAAGT
CTAACATCAGCCCCGCCCTAAGAGTTACAACAAACGGAAAAATCCCAAAT
TGCGTACCTATAAAGGCTAAATTTCGGGGGACCCaataagggtcccaaaa
ttctaaaaacatgtcgccgtgtcaattcaagacagacttaagtccatttt
tcgaaaattgacttaagaccataaccccctattttagcatgcacgctttc
caaaaacggccttaagtccacagaattctaatgggaaagaggtgtatttt
gcaattcaaaaaaaataagaatttagaaagttccataatatatcaaccat
aaacagccttaagtgctaaattttagtgcaaattttattttctatgaagc
attggcatgaaatgtgtagccttaagtccaacacatctcaacctttaaag
tcaattatctcaaaatggaaaaaatggacttaaggctgtcttgaattgac
acggcgatgtatgcttttttcctgaaaatttccGATTTTTAAACCTCGGG
TGGCAGACACCCTCCCGTGAAAACTTTCAACGTTCAGCAACTTTACCACG
AATTTCAGGAAAATAGAAAACCGTTATCATATTTAAGAGAGGGTTAATAA
TTAAATACACATATGTTTGATGATACTTTGACTGTCAAATTAAAAAAGCT
GACAAATTATGAAGCCAATTAAAAACTTATGGTGAGTTTATCTGATGCAA
TTAGTTAGATGATTAATAAAAACCCGAAAACATGTCTTTCATCATGGCCT
TGTGGTTTTGAAGATCCGCCTTTTACTCGTTTCAATTTTAATGANCAATT
AGTTAGATGATTAATAAAAACCCGAAAACATCATAGTCTTGTGGTTTCAA
TTTTAATGAATTAAGCTCGTTGCGACAGTACTTCTTTAAAGGCAACaagt
aaaagtaaaataatGAATAAGTCGAAAGTTAGAAAAGCGAAAATTAGATA
TAAACTCTCTACCACTTATTAGGCCCTAGTGTCAGGTTATTAGCAAATCG
AGATTTCTTGATTCAAGATATTCATGGCGTAATGTTTCATACGGTAGAAT
CCGAAAAAGACCGGGTGTTTGCCACTTATTTTGAATTGAAACAATAAAAC
CAGCGGCAAACTTCCGGGCTtctttgggtgcttccgtataaaacattatg
aCACCCCCtactcacagacccactggaaaatttgtccaaaatatcgtccc
cggtggaaaattatcctccaatttttgttcccactgataataatcaaata
aaccaatcctcactgcaaaatattatgctatttttcccatccccactgaa
ttttctgacttgaaaacaaaagaattgaaacccCCAGCCAAAATATATGG
GAACATCAATCCCCCatcaagtttcagtccgttGTTTTCATCCCAACTGG
atggaaaaatcctaccgggtctgtgagaagggggtgtaatatGTCACGAA
TATCATTTACAACACAAAGACGAAGCCTAAATAATAATGACAAATAATGT
ggttactaaaataaaaatagattcGGTTATATTGGATAAAGTGTAAAATT
AGTAGTTGTGCTAAAATTAGAAGTTCATCATTTAAAATTTGTCGATTGAT
TTATTGCTGTTTGTAGCTCTCTTCTCCATGCGTTGTGCGTACGATAAGAA
AATGCGCCCGCACAGCGTGTCAACGTGTTTCTGCATCGTATCGTAGGTAA
GGGCATCTTTCTTCGCCATTAAGAATCTAGCGAAGGATTTTCGTTTGGAC
AATTCGGTGACGTTGTTCTGTATCTTTGTCAACGTTTCACGAAGATCGGG
ATAAAATTCGGCGTTTCTGAGAAAAGTTGCCTCCGATCCGCTCAAAGCTT
GGATGATTTGTTTGATAAGATTGGTATATTTTGAGAGATACGATTTGttg
cgttttgaatttttgatgctttttgagatttcttcgaCTTGAAGATTTAA
AgagttttgaatttgaaaggAGACTTTCGGCCTCGGCAAAAGAGCAGTAC
TTCCAGCTGCCATTTTGATTTCGGGACGGTTAATGATAATACGATGTGAT
gaaataaattctgaaaaatttgaggATTTTGATATCCTTGTTGAATTAAA
ATTAAAGTCCAAATACAGTTCTGCTGTAAATATATTCTAACCCATCAGTG
GATTGTGTGGGAGTTCACTAGTCTCTAGCTACCGTCGTCGAAAACTTGAG
TGTCGGTTTCAATAGCAGGACATTCACGTGCACCGAGATTGAGATCGTTT
ACCACCAAAATCTTTTGTGTACCCTCATTCGGTGAAAAAGTAACCATCAG
TGTAAAAAAACCTTTATCCAATTCAAGTTAACAAACCAAAAACGTTTGTT
TGTCGTGTATATCAAAGTTTAGAAAGTGTAAAGAATTTGTTAAGTCAAAC
CAAGCCTAAGTTACAAATGTTGACTTCAAATCAAATCATATCACACACGA
ACAACCCTTTTGAACATCAACTGAGCGTTTGAATGTCTCTCTAACAACTG
ACAACACATCAGAAATATCAGCACAAATTGCAATGTAATGACATCATCAA
TTAAAACAATAGCACAACAATTAGTCAAGATTTCATCTCTTTTGTTCAAT
GACGCGCGCTTTGAGCTTTTGTTGAAAGGAACAGACAACTCAATGTCAAA
AGCAAGCTGACTGttctttt Run BLAST on NCBI protein sequence of TCONS_00058587-protein >TCONS_00058587-protein ID=TCONS_00058587-protein|Name=TCONS_00058587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MAAGSTALLPRPKVSFQIQNSLNLQVEEISKSIKNSKRNKSYLSKYTNLI
KQIIQALSGSEATFLRNAEFYPDLRETLTKIQNNVTELSKRKSFARFLMA
KKDALTYDTMQKHVDTLCGRIFLSYAQRMEKRATNSNKSIDKF Run BLAST on NCBI transcript from alignment at scaffold_311:23534..26453 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058587 ID=TCONS_00058587|Name=TCONS_00058587|organism=Clytia hemisphaerica|type=transcript|length=2920bp|location=Sequence derived from alignment at scaffold_311:23534..26453 (Clytia hemisphaerica)
aaaagaaCAGTCAGCTTGCTTTTGACATTGAGTTGTCTGTTCCTTTCAAC
AAAAGCTCAAAGCGCGCGTCATTGAACAAAAGAGATGAAATCTTGACTAA
TTGTTGTGCTATTGTTTTAATTGATGATGTCATTACATTGCAATTTGTGC
TGATATTTCTGATGTGTTGTCAGTTGTTAGAGAGACATTCAAACGCTCAG
TTGATGTTCAAAAGGGTTGTTCGTGTGTGATATGATTTGATTTGAAGTCA
ACATTTGTAACTTAGGCTTGGTTTGACTTAACAAATTCTTTACACTTTCT
AAACTTTGATATACACGACAAACAAACGTTTTTGGTTTGTTAACTTGAAT
TGGATAAAGGTTTTTTTACACTGATGGTTACTTTTTCACCGAATGAGGGT
ACACAAAAGATTTTGGTGGTAAACGATCTCAATCTCGGTGCACGTGAATG
TCCTGCTATTGAAACCGACACTCAAGTTTTCGACGACGGTAGCTAGAGAC
TAGTGAACTCCCACACAATCCACTGATGGGTTAGAATATATTTACAGCAG
AACTGTATTTGGACTTTAATTTTAATTCAACAAGGATATCAAAATcctca
aatttttcagaatttatttcATCACATCGTATTATCATTAACCGTCCCGA
AATCAAAATGGCAGCTGGAAGTACTGCTCTTTTGCCGAGGCCGAAAGTCT
cctttcaaattcaaaactcTTTAAATCTTCAAGtcgaagaaatctcaaaa
agcatcaaaaattcaaaacgcaaCAAATCGTATCTCTCAAAATATACCAA
TCTTATCAAACAAATCATCCAAGCTTTGAGCGGATCGGAGGCAACTTTTC
TCAGAAACGCCGAATTTTATCCCGATCTTCGTGAAACGTTGACAAAGATA
CAGAACAACGTCACCGAATTGTCCAAACGAAAATCCTTCGCTAGATTCTT
AATGGCGAAGAAAGATGCCCTTACCTACGATACGATGCAGAAACACGTTG
ACACGCTGTGCGGGCGCATTTTCTTATCGTACGCACAACGCATGGAGAAG
AGAGCTACAAACAGCAATAAATCAATCGACAAATTTTAAATGATGAACTT
CTAATTTTAGCACAACTACTAATTTTACACTTTATCCAATATAACCgaat
ctatttttattttagtaaccACATTATTTGTCATTATTATTTAGGCTTCG
TCTTTGTGTTGTAAATGATATTCGTGACatattacacccccttctcacag
acccggtaggatttttccatCCAGTTGGGATGAAAACaacggactgaaac
ttgatGGGGGATTGATGTTCCCATATATTTTGGCTGGgggtttcaattct
tttgttttcaagtcagaaaattcagtggggatgggaaaaatagcataata
ttttgcagtgaggattggtttatttgattattatcagtgggaacaaaaat
tggaggataattttccaccggggacgatattttggacaaattttccagtg
ggtctgtgagtaGGGGGTGtcataatgttttatacggaagcacccaaaga
AGCCCGGAAGTTTGCCGCTGGTTTTATTGTTTCAATTCAAAATAAGTGGC
AAACACCCGGTCTTTTTCGGATTCTACCGTATGAAACATTACGCCATGAA
TATCTTGAATCAAGAAATCTCGATTTGCTAATAACCTGACACTAGGGCCT
AATAAGTGGTAGAGAGTTTATATCTAATTTTCGCTTTTCTAACTTTCGAC
TTATTCattattttacttttacttGTTGCCTTTAAAGAAGTACTGTCGCA
ACGAGCTTAATTCATTAAAATTGAAACCACAAGACTATGATGTTTTCGGG
TTTTTATTAATCATCTAACTAATTGNTCATTAAAATTGAAACGAGTAAAA
GGCGGATCTTCAAAACCACAAGGCCATGATGAAAGACATGTTTTCGGGTT
TTTATTAATCATCTAACTAATTGCATCAGATAAACTCACCATAAGTTTTT
AATTGGCTTCATAATTTGTCAGCTTTTTTAATTTGACAGTCAAAGTATCA
TCAAACATATGTGTATTTAATTATTAACCCTCTCTTAAATATGATAACGG
TTTTCTATTTTCCTGAAATTCGTGGTAAAGTTGCTGAACGTTGAAAGTTT
TCACGGGAGGGTGTCTGCCACCCGAGGTTTAAAAATCggaaattttcagg
aaaaaagcatacatcgccgtgtcaattcaagacagccttaagtccatttt
ttccattttgagataattgactttaaaggttgagatgtgttggacttaag
gctacacatttcatgccaatgcttcatagaaaataaaatttgcactaaaa
tttagcacttaaggctgtttatggttgatatattatggaactttctaaat
tcttattttttttgaattgcaaaatacacctctttcccattagaattctg
tggacttaaggccgtttttggaaagcgtgcatgctaaaatagggggttat
ggtcttaagtcaattttcgaaaaatggacttaagtctgtcttgaattgac
acggcgacatgtttttagaattttgggacccttattGGGTCCCCCGAAAT
TTAGCCTTTATAGGTACGCAATTTGGGATTTTTCCGTTTGTTGTAACTCT
TAGGGCGGGGCTGATGTTAGACTTAATGATTTTTACGACCTCCGTTCCCT
CCCCCAGGAAGGTTTTTTACCAGGTAATTTGTTTacgtattttattttat
tacctTCATACATGCGTTATCATTTTGAtgaattatattttgaaaaatac
catAGATTTAATGCCTTCCTGTTATTCGATTCTCAATATCCCGGGGGTGT
GTGAGGGCTGCTATAAAAATATCACATAATCATTGATGGTCTTTTGGtgg
attgttttgaaaaatcgtGC Coding sequence (CDS) from alignment at scaffold_311:23534..26453 >TCONS_00058587 ID=TCONS_00058587|Name=TCONS_00058587|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_311:23534..26453 (Clytia hemisphaerica)
ATGGCAGCTGGAAGTACTGCTCTTTTGCCGAGGCCGAAAGTCTcctttca
aattcaaaactcTTTAAATCTTCAAGtcgaagaaatctcaaaaagcatca
aaaattcaaaacgcaaCAAATCGTATCTCTCAAAATATACCAATCTTATC
AAACAAATCATCCAAGCTTTGAGCGGATCGGAGGCAACTTTTCTCAGAAA
CGCCGAATTTTATCCCGATCTTCGTGAAACGTTGACAAAGATACAGAACA
ACGTCACCGAATTGTCCAAACGAAAATCCTTCGCTAGATTCTTAATGGCG
AAGAAAGATGCCCTTACCTACGATACGATGCAGAAACACGTTGACACGCT
GTGCGGGCGCATTTTCTTATCGTACGCACAACGCATGGAGAAGAGAGCTA
CAAACAGCAATAAATCAATCGACAAATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058587-exon-scaffold_311-1491911889:23534..26453 | TCONS_00058587-exon-scaffold_311-1491911889:23534..26453 | Clytia hemisphaerica | exon |
| TCONS_00058587-exon-scaffold_311-1510915933:23534..26453 | TCONS_00058587-exon-scaffold_311-1510915933:23534..26453 | Clytia hemisphaerica | exon |
| TCONS_00058587-exon-scaffold_311-1575043694:23534..26453 | TCONS_00058587-exon-scaffold_311-1575043694:23534..26453 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_311 | supercontig | scaffold_311:23534..26453 . |
Blast
The following BLAST results are available for this feature:
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