TCONS_00058598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058598
Unique NameTCONS_00058598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058598 ID=TCONS_00058598|Name=TCONS_00058598|organism=Clytia hemisphaerica|type=transcript|length=454bp
CTACGCCCTTCGCTAAATCAGCTGGTGGAATCACCCTCTTCAGTTTATTG
GGCGTCAGTGGTTTCTCAGGCTTATTACTGGTTGCAAAGAACCTTCTCAT
GGGTGAAGGACTTAGTCTGAATTGCGGCGAGGGGATTGAGATTACCCTTG
GGTGCGACAAGTTGTACAAGTGTTGTTCGTGTTGTTGTGGCGACAAGAAG
GATGATGATGAGAATAGCGAAAAAATCCGATTGACTGCACCCAATGATGA
CACAGACATTGAAGATGGACACAAACACAAATAAAACTGGATGGATTTAC
ACCCCATCTACACTTAGTTAAATAATACatctacagttgactctcgctaa
ttcgagaaaattaaagggataatcagatggtttgagatccGGGGGGGGtg
gttatttaggcaaaaatgggtgctaggtatgtgcggacggtaacggtcgt
tttt
Run BLAST on NCBI

transcript from alignment at scaffold_311:316651..317104

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058598 ID=TCONS_00058598|Name=TCONS_00058598|organism=Clytia hemisphaerica|type=transcript|length=454bp|location=Sequence derived from alignment at scaffold_311:316651..317104 (Clytia hemisphaerica)
aaaaacgaccgttaccgtccgcacatacctagcacccatttttgcctaaa
taaccaCCCCCCCCggatctcaaaccatctgattatccctttaattttct
cgaattagcgagagtcaactgtagatGTATTATTTAACTAAGTGTAGATG
GGGTGTAAATCCATCCAGTTTTATTTGTGTTTGTGTCCATCTTCAATGTC
TGTGTCATCATTGGGTGCAGTCAATCGGATTTTTTCGCTATTCTCATCAT
CATCCTTCTTGTCGCCACAACAACACGAACAACACTTGTACAACTTGTCG
CACCCAAGGGTAATCTCAATCCCCTCGCCGCAATTCAGACTAAGTCCTTC
ACCCATGAGAAGGTTCTTTGCAACCAGTAATAAGCCTGAGAAACCACTGA
CGCCCAATAAACTGAAGAGGGTGATTCCACCAGCTGATTTAGCGAAGGGC
GTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036907XLOC_036907Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058598-exon-scaffold_311-1491911889:316651..317104TCONS_00058598-exon-scaffold_311-1491911889:316651..317104Clytia hemisphaericaexon
TCONS_00058598-exon-scaffold_311-1510915933:316651..317104TCONS_00058598-exon-scaffold_311-1510915933:316651..317104Clytia hemisphaericaexon
TCONS_00058598-exon-scaffold_311-1575043694:316651..317104TCONS_00058598-exon-scaffold_311-1575043694:316651..317104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:316651..317104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01365	0.564839	0	0.802037	0.781122	0.617253	3.16493	4.18302	20.5004	7.85975	27.728	20.349	6.06732	6.40099	11.5117	11.2067	1.63059	2.33983	1.69326	2.09404	0.560031	0	1.82636	1.66043	0.932838	1.38756	0.595678	0.423816	0.964348	3.27506
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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