TCONS_00058625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058625
Unique NameTCONS_00058625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058625 ID=TCONS_00058625|Name=TCONS_00058625|organism=Clytia hemisphaerica|type=transcript|length=387bp
ctttttttttatcgatatgttaatttttaaaaagtgaaaatttcagTTCT
GTTATTTTATAGCTACTTTTTTTACGTGCTAAACGTTCAAAATATAATGG
TTGCCTATTGGCTAAACTGGGAAATCTTTCCTAATTGATTCCTCGAAATC
CTTTCCGCTGCTTTTATCGGTACCAGTAAGAATATAGTATTGTTACGCAC
AAAGACGTAGACCACTTAAAGCGACTTCGTAACTGTCTATCTTACTAAGT
GAAGCCTTAGCCATGGTAATTTTTCCGTTGTTAGATGGCAGTCAGTGAGC
AAAGTTTTCCCGGTAATATAGGTTACCTGATATCTAATgtattgaatatt
tattttgtaaaaatctcttttttatgttttgatgaag
Run BLAST on NCBI

transcript from alignment at scaffold_311:873998..874384

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058625 ID=TCONS_00058625|Name=TCONS_00058625|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at scaffold_311:873998..874384 (Clytia hemisphaerica)
cttcatcaaaacataaaaaagagatttttacaaaataaatattcaatacA
TTAGATATCAGGTAACCTATATTACCGGGAAAACTTTGCTCACTGACTGC
CATCTAACAACGGAAAAATTACCATGGCTAAGGCTTCACTTAGTAAGATA
GACAGTTACGAAGTCGCTTTAAGTGGTCTACGTCTTTGTGCGTAACAATA
CTATATTCTTACTGGTACCGATAAAAGCAGCGGAAAGGATTTCGAGGAAT
CAATTAGGAAAGATTTCCCAGTTTAGCCAATAGGCAACCATTATATTTTG
AACGTTTAGCACGTAAAAAAAGTAGCTATAAAATAACAGAActgaaattt
tcactttttaaaaattaacatatcgataaaaaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036934XLOC_036934Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058625-exon-scaffold_311-1491911889:873998..874384TCONS_00058625-exon-scaffold_311-1491911889:873998..874384Clytia hemisphaericaexon
TCONS_00058625-exon-scaffold_311-1510915933:873998..874384TCONS_00058625-exon-scaffold_311-1510915933:873998..874384Clytia hemisphaericaexon
TCONS_00058625-exon-scaffold_311-1575043694:873998..874384TCONS_00058625-exon-scaffold_311-1575043694:873998..874384Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:873998..874384 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.199313	0.194362	0.225673	0	0.806355	0	0.512497	0.479794	0.335915	0.624127	0.201931	1.06193	0.132557	0.137662	0.33953	0	1.19699	0	0	0.221711	1.54166	0.563975	1.82823	0.831062	0.213994	1.71886	0.819894	0.583342	0.442444	0.676171
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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