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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058628 ID=TCONS_00058628|Name=TCONS_00058628|organism=Clytia hemisphaerica|type=transcript|length=3071bp
GCCGCGTTTAagcttatatttttttaaattaaaatgccgtttgaagaaac
tttttgttaatttaatgCAGGCTTTTTGCAGGTAATTTTCGCTTACACAC
CTCAGAAGCAAGCTAAgtaatatgcttgtaatatgcttattttttagaca
aattcaggtctcagtatgcttataaacgttatgcttataaaaaaacatgt
atggtCAGAGTCCTTAAGAGTAGAAGCCCGGGGGCACTTGACCTTGAAGG
CCGACGGGACTTGCCACTGGAGTTtcaaaagtggaccctgtcaaaAAGTC
TTTGGTAAATCTAGGATcatgtcagaacgaaaaatcgtTTTCCCATTTTT
ACCCTGATAAATAGTggaaaagcgacaaaaagattgattgaaaaaaatat
ttcaaatttccactctgaaaactgtcaaaaataaccaaaagtccatgtca
gatatcttcagagccgaaaaaagggaccctgaccagcggcacgttcCCTT
ACCCAATTTTGCTTAAGTGTCTCTCCCGGGAGTAGaagtaataaaaaaat
gatCATAAATAGCCTGAAATATCTAAATTTTGACCTAAAATATAAACAGG
ATAAACAAAAATTGAGGCTTATAAATCAAAGAGCTAAATAAATCACACTA
CCGTATATATttactagttcttataaaaaagagcacGTTCGTTGCCTTTA
ACCAATGAGAGAGAGGTAAAGTTAATTGGCAAAGTTCTAACTGTTTGAAC
TTCAAAggatattttaaatattttacatATAAATCACTTTAGTCATTTAA
ATAGTCATTTTTTACTTTAATGCAgccctgtatcacagacccaTTGAGAC
CCCtgccccactggattttttaaccttagaacaataaaatttctatcccc
actgagattttaatgggaatttttatccccaccgaggaaaaaagttccac
cgggactgtgagacaggggtgttttaattGAGATTGGAGGCCGAAAACTC
AAAATTCTTTGACCTAGatcaaaatttgtttaaagAGAAAGTCTTTCATC
CCTTCAAAGAACATCTTTAAATACCAAGCGAAAACTTTGGGGGAATTTTT
CAGGGCGTTATTCAATGGGCGGCACCATTCCATATGATCTCATCTTCATT
GTTATTATAACATCCTGCTGTTATACCCAGCTCATATCTACAACTATCGT
TTACTTCGTCACTGTAGCTACCTTGTCTCGATTTTCGTGCAATCACTGAT
TTGGCTTTTGAGCCATACGATGGTTTAGCGTGTTCCAAGCACATGCTACC
ATAACAATACGTCACACTTAAGCTTGGACCTAAATGACAGTCTGAATCAC
TGCGACATCCTTCTTTCGCTAGTTCACATTGAAATATAGGAAATCTATTA
TCATCGTTCCGATATTTAAATCTCCTTACTTTCTCTCCTCCAATTTCAAT
CAAGGTGCATCCAAAATCGAGCATACCCTCATAGTATTGTTTTATATTCA
TGGCAATTTTAGATCTGCTTTTATCATGGCCgtatttcattaaaaagata
tCCCAAAGAGGAATATATTTGTACTCAATTGGTTGTTCCATTGTCGATCC
TTCGTTCAAAAGCTTTTCTATCAGCTCTGGTGTTCGCTCTATAATGAGTT
TATTTCGCGTTTTCTCTGTACCACCTCGAATTTCAAGGTTGTAAGAGGTT
GCCATATTTAAATTTAATGCTGCAGATTCCTTCATAATCTTGCTACAAGC
ATTAAACTGTGCAGGTACAATTGAGACAGCAGAAAACAAATCGAAACAAG
CTTTAACCTGTAGAGATTGCATACTGTAAGATTCGGATGATTTAGCGAAA
GTCCATTGTCTTAAAGAAGAACCCATGATAACTTGATTTGTAAAATGCGT
TCCCCATTTCTTCAAAAATGTATCATAAGCTTGCCAGCTTTCCATGTTTT
CCGGTTTGTCAATAACCGTTGGAAGAGCATCAAAATCGGTCAAAATATGA
CTGGTCAATTGACTAGCCGAGAttttatagcattttgggtCCAATGTAAT
TGATCTTGTGTGAGTGTAAATTTCAAATGAAGTTCCCATAACTCTAGTTA
TACCAGCCGATAAAGAATCAGTTTTTACACTCAGAGTTGCTCCCATCGTT
CTTTTCCCTATCAAGGATACACCTACTCCAGTATCAGTAGCAATTCTTTT
ATAAAAGATATCAATGTTTTCATAAACATCAGATCGCTGTGCTGTTTTTG
CCAAAGTCTTTATGATGAAACAATGTTCAGGAAATGGCTTCCAAATTTGT
ATACCATTCAATGTGGTACTATATAAATCCGATTTTGGAAGAAAATGGCT
TGATAGAACGGTTCTCATAGCTTTTGAACATGGCGCAGATTCATTGAGTA
GAGCcccatttttatcaaaaattggaAGTTCACACTTAAAGGGTGATTGA
TTTATATAGTGGACAACAACTGCAACTGTGATTAATGAACAACTGAGAAA
AGCAACTAGACCAAAAACCAAAACTTTAGATTTAGTACAATATCGGTATT
CTGTAGTGTGGTTAATCAATATCAACGCCTCATTTTCATCTGACTTTTCG
TTTTCCATTCGACTATACTGGACGGTAATATCATTCATGTTATTGTGAGT
GATAACTAGATGACGAGCTTGCAGTCTTGTTATCCTTGACTTAGCTTTAT
ATCTTCTTTTGCCACCGAACGTAGAATTCTTTTTCTTCTAGAAGGTATca
gatttgttgttttttaaatattgataTTTCAATACCTCTTGGCCATGCGC
ACTATGATTTTACTGAAGCAACATAAAATGTATCGAAATCTGATATCCAT
TCAGTTATGATTCAGCAATCTTGCTTCTTTCAAACTATCTTTTGTTGGAA
AGTTAAAGCGTTGTAATCTGTTTGGAAAAAATCTTGAGGATTAGTTAAAA
CTGCCTTACGATATGTAATTGTAAACCATGAGAACAATTCCTGAAAGCCT
TGATTTGTCTAGTTATTCGTAAACCCTTTTCAATCTCTCATCAAACATTC
AAAATAATCGTACGATACAAC Run BLAST on NCBI protein sequence of TCONS_00058628-protein >TCONS_00058628-protein ID=TCONS_00058628-protein|Name=TCONS_00058628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bp
MNDITVQYSRMENEKSDENEALILINHTTEYRYCTKSKVLVFGLVAFLSC
SLITVAVVVHYINQSPFKCELPIFDKNGALLNESAPCSKAMRTVLSSHFL
PKSDLYSTTLNGIQIWKPFPEHCFIIKTLAKTAQRSDVYENIDIFYKRIA
TDTGVGVSLIGKRTMGATLSVKTDSLSAGITRVMGTSFEIYTHTRSITLD
PKCYKISASQLTSHILTDFDALPTVIDKPENMESWQAYDTFLKKWGTHFT
NQVIMGSSLRQWTFAKSSESYSMQSLQVKACFDLFSAVSIVPAQFNACSK
IMKESAALNLNMATSYNLEIRGGTEKTRNKLIIERTPELIEKLLNEGSTM
EQPIEYKYIPLWDIFLMKYGHDKSRSKIAMNIKQYYEGMLDFGCTLIEIG
GEKVRRFKYRNDDNRFPIFQCELAKEGCRSDSDCHLGPSLSVTYCYGSMC
LEHAKPSYGSKAKSVIARKSRQGSYSDEVNDSCRYELGITAGCYNNNEDE
IIWNGAAH Run BLAST on NCBI transcript from alignment at scaffold_311:930651..933721 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058628 ID=TCONS_00058628|Name=TCONS_00058628|organism=Clytia hemisphaerica|type=transcript|length=3071bp|location=Sequence derived from alignment at scaffold_311:930651..933721 (Clytia hemisphaerica)
GTTGTATCGTACGATTATTTTGAATGTTTGATGAGAGATTGAAAAGGGTT
TACGAATAACTAGACAAATCAAGGCTTTCAGGAATTGTTCTCATGGTTTA
CAATTACATATCGTAAGGCAGTTTTAACTAATCCTCAAGATTTTTTCCAA
ACAGATTACAACGCTTTAACTTTCCAACAAAAGATAGTTTGAAAGAAGCA
AGATTGCTGAATCATAACTGAATGGATATCAGATTTCGATACATTTTATG
TTGCTTCAGTAAAATCATAGTGCGCATGGCCAAGAGGTATTGAAAtatca
atatttaaaaaacaacaaatctgATACCTTCTAGAAGAAAAAGAATTCTA
CGTTCGGTGGCAAAAGAAGATATAAAGCTAAGTCAAGGATAACAAGACTG
CAAGCTCGTCATCTAGTTATCACTCACAATAACATGAATGATATTACCGT
CCAGTATAGTCGAATGGAAAACGAAAAGTCAGATGAAAATGAGGCGTTGA
TATTGATTAACCACACTACAGAATACCGATATTGTACTAAATCTAAAGTT
TTGGTTTTTGGTCTAGTTGCTTTTCTCAGTTGTTCATTAATCACAGTTGC
AGTTGTTGTCCACTATATAAATCAATCACCCTTTAAGTGTGAACTtccaa
tttttgataaaaatgggGCTCTACTCAATGAATCTGCGCCATGTTCAAAA
GCTATGAGAACCGTTCTATCAAGCCATTTTCTTCCAAAATCGGATTTATA
TAGTACCACATTGAATGGTATACAAATTTGGAAGCCATTTCCTGAACATT
GTTTCATCATAAAGACTTTGGCAAAAACAGCACAGCGATCTGATGTTTAT
GAAAACATTGATATCTTTTATAAAAGAATTGCTACTGATACTGGAGTAGG
TGTATCCTTGATAGGGAAAAGAACGATGGGAGCAACTCTGAGTGTAAAAA
CTGATTCTTTATCGGCTGGTATAACTAGAGTTATGGGAACTTCATTTGAA
ATTTACACTCACACAAGATCAATTACATTGGacccaaaatgctataaaaT
CTCGGCTAGTCAATTGACCAGTCATATTTTGACCGATTTTGATGCTCTTC
CAACGGTTATTGACAAACCGGAAAACATGGAAAGCTGGCAAGCTTATGAT
ACATTTTTGAAGAAATGGGGAACGCATTTTACAAATCAAGTTATCATGGG
TTCTTCTTTAAGACAATGGACTTTCGCTAAATCATCCGAATCTTACAGTA
TGCAATCTCTACAGGTTAAAGCTTGTTTCGATTTGTTTTCTGCTGTCTCA
ATTGTACCTGCACAGTTTAATGCTTGTAGCAAGATTATGAAGGAATCTGC
AGCATTAAATTTAAATATGGCAACCTCTTACAACCTTGAAATTCGAGGTG
GTACAGAGAAAACGCGAAATAAACTCATTATAGAGCGAACACCAGAGCTG
ATAGAAAAGCTTTTGAACGAAGGATCGACAATGGAACAACCAATTGAGTA
CAAATATATTCCTCTTTGGGatatctttttaatgaaatacGGCCATGATA
AAAGCAGATCTAAAATTGCCATGAATATAAAACAATACTATGAGGGTATG
CTCGATTTTGGATGCACCTTGATTGAAATTGGAGGAGAGAAAGTAAGGAG
ATTTAAATATCGGAACGATGATAATAGATTTCCTATATTTCAATGTGAAC
TAGCGAAAGAAGGATGTCGCAGTGATTCAGACTGTCATTTAGGTCCAAGC
TTAAGTGTGACGTATTGTTATGGTAGCATGTGCTTGGAACACGCTAAACC
ATCGTATGGCTCAAAAGCCAAATCAGTGATTGCACGAAAATCGAGACAAG
GTAGCTACAGTGACGAAGTAAACGATAGTTGTAGATATGAGCTGGGTATA
ACAGCAGGATGTTATAATAACAATGAAGATGAGATCATATGGAATGGTGC
CGCCCATTGAATAACGCCCTGAAAAATTCCCCCAAAGTTTTCGCTTGGTA
TTTAAAGATGTTCTTTGAAGGGATGAAAGACTTTCTctttaaacaaattt
tgatCTAGGTCAAAGAATTTTGAGTTTTCGGCCTCCAATCTCaattaaaa
cacccctgtctcacagtcccggtggaacttttttcctcggtggggataaa
aattcccattaaaatctcagtggggatagaaattttattgttctaaggtt
aaaaaatccagtggggcaGGGGTCTCAAtgggtctgtgatacagggcTGC
ATTAAAGTAAAAAATGACTATTTAAATGACTAAAGTGATTTATatgtaaa
atatttaaaatatccTTTGAAGTTCAAACAGTTAGAACTTTGCCAATTAA
CTTTACCTCTCTCTCATTGGTTAAAGGCAACGAACgtgctcttttttata
agaactagtaaATATATACGGTAGTGTGATTTATTTAGCTCTTTGATTTA
TAAGCCTCAATTTTTGTTTATCCTGTTTATATTTTAGGTCAAAATTTAGA
TATTTCAGGCTATTTATGatcatttttttattacttCTACTCCCGGGAGA
GACACTTAAGCAAAATTGGGTAAGGgaacgtgccgctggtcagggtccct
tttttcggctctgaagatatctgacatggacttttggttatttttgacag
ttttcagagtggaaatttgaaatatttttttcaatcaatctttttgtcgc
ttttccACTATTTATCAGGGTAAAAATGGGAAAacgatttttcgttctga
catgATCCTAGATTTACCAAAGACTTtttgacagggtccacttttgaAAC
TCCAGTGGCAAGTCCCGTCGGCCTTCAAGGTCAAGTGCCCCCGGGCTTCT
ACTCTTAAGGACTCTGaccatacatgtttttttataagcataacgtttat
aagcatactgagacctgaatttgtctaaaaaataagcatattacaagcat
attacTTAGCTTGCTTCTGAGGTGTGTAAGCGAAAATTACCTGCAAAAAG
CCTGcattaaattaacaaaaagtttcttcaaacggcattttaatttaaaa
aaatataagctTAAACGCGGC Coding sequence (CDS) from alignment at scaffold_311:930651..933721 >TCONS_00058628 ID=TCONS_00058628|Name=TCONS_00058628|organism=Clytia hemisphaerica|type=CDS|length=1527bp|location=Sequence derived from alignment at scaffold_311:930651..933721 (Clytia hemisphaerica)
ATGAATGATATTACCGTCCAGTATAGTCGAATGGAAAACGAAAAGTCAGA
TGAAAATGAGGCGTTGATATTGATTAACCACACTACAGAATACCGATATT
GTACTAAATCTAAAGTTTTGGTTTTTGGTCTAGTTGCTTTTCTCAGTTGT
TCATTAATCACAGTTGCAGTTGTTGTCCACTATATAAATCAATCACCCTT
TAAGTGTGAACTtccaatttttgataaaaatgggGCTCTACTCAATGAAT
CTGCGCCATGTTCAAAAGCTATGAGAACCGTTCTATCAAGCCATTTTCTT
CCAAAATCGGATTTATATAGTACCACATTGAATGGTATACAAATTTGGAA
GCCATTTCCTGAACATTGTTTCATCATAAAGACTTTGGCAAAAACAGCAC
AGCGATCTGATGTTTATGAAAACATTGATATCTTTTATAAAAGAATTGCT
ACTGATACTGGAGTAGGTGTATCCTTGATAGGGAAAAGAACGATGGGAGC
AACTCTGAGTGTAAAAACTGATTCTTTATCGGCTGGTATAACTAGAGTTA
TGGGAACTTCATTTGAAATTTACACTCACACAAGATCAATTACATTGGac
ccaaaatgctataaaaTCTCGGCTAGTCAATTGACCAGTCATATTTTGAC
CGATTTTGATGCTCTTCCAACGGTTATTGACAAACCGGAAAACATGGAAA
GCTGGCAAGCTTATGATACATTTTTGAAGAAATGGGGAACGCATTTTACA
AATCAAGTTATCATGGGTTCTTCTTTAAGACAATGGACTTTCGCTAAATC
ATCCGAATCTTACAGTATGCAATCTCTACAGGTTAAAGCTTGTTTCGATT
TGTTTTCTGCTGTCTCAATTGTACCTGCACAGTTTAATGCTTGTAGCAAG
ATTATGAAGGAATCTGCAGCATTAAATTTAAATATGGCAACCTCTTACAA
CCTTGAAATTCGAGGTGGTACAGAGAAAACGCGAAATAAACTCATTATAG
AGCGAACACCAGAGCTGATAGAAAAGCTTTTGAACGAAGGATCGACAATG
GAACAACCAATTGAGTACAAATATATTCCTCTTTGGGatatctttttaat
gaaatacGGCCATGATAAAAGCAGATCTAAAATTGCCATGAATATAAAAC
AATACTATGAGGGTATGCTCGATTTTGGATGCACCTTGATTGAAATTGGA
GGAGAGAAAGTAAGGAGATTTAAATATCGGAACGATGATAATAGATTTCC
TATATTTCAATGTGAACTAGCGAAAGAAGGATGTCGCAGTGATTCAGACT
GTCATTTAGGTCCAAGCTTAAGTGTGACGTATTGTTATGGTAGCATGTGC
TTGGAACACGCTAAACCATCGTATGGCTCAAAAGCCAAATCAGTGATTGC
ACGAAAATCGAGACAAGGTAGCTACAGTGACGAAGTAAACGATAGTTGTA
GATATGAGCTGGGTATAACAGCAGGATGTTATAATAACAATGAAGATGAG
ATCATATGGAATGGTGCCGCCCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058628-exon-scaffold_311-1491911889:930651..933721 | TCONS_00058628-exon-scaffold_311-1491911889:930651..933721 | Clytia hemisphaerica | exon |
| TCONS_00058628-exon-scaffold_311-1510915933:930651..933721 | TCONS_00058628-exon-scaffold_311-1510915933:930651..933721 | Clytia hemisphaerica | exon |
| TCONS_00058628-exon-scaffold_311-1575043694:930651..933721 | TCONS_00058628-exon-scaffold_311-1575043694:930651..933721 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:930651..933721 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020864 | MACPF |
Blast
The following BLAST results are available for this feature:
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