TCONS_00058664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058664
Unique NameTCONS_00058664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058664 ID=TCONS_00058664|Name=TCONS_00058664|organism=Clytia hemisphaerica|type=transcript|length=302bp
ACATACTTCCAGCCCGATTCGTAACCAAAGCGAGTTGAACGAGAGCAATA
ATTTTGTGATCTGGTTCTTGATACCTAAGTCAGCCAAGATGTGTTTTTCT
CCTCTAACAGAAATCAAACCACACTCCACCTCTTTTTCAATCTTGTGAAT
CACAAACCGAAAATCTTCAGATTGATAACACCTGCACGCAGAGCGTCTCA
ATTGGACCATTCGGCGACGTAAAGAATACGCGCGGAAAGAGAGGACTTCT
CGTGTAGGAGCTATTTCTTGTTTCTTTTGAGCATCAATAGTGaaagtttc
ta
Run BLAST on NCBI

transcript from alignment at scaffold_312:124026..125156+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058664 ID=TCONS_00058664|Name=TCONS_00058664|organism=Clytia hemisphaerica|type=transcript|length=1131bp|location=Sequence derived from alignment at scaffold_312:124026..125156+ (Clytia hemisphaerica)
ACATACTTCCAGCCCGATTCGTAACCAAAGCGAGTTGAACGAGAGCAATA
ATTTTGTGATCTGGTTCTTGAtaccttattaaaaaaaaagaaaagaacat
tttagtttaaattgtaaaattaaaGCGAGAATTTACTGGAAAACCAGTGA
AAATTCATCCTTCCTACGAAGAGTAGTATTTGCGAGAAAGCAAACctcta
aaatttgaaattttcataacatctttacaatttaaaaccaaagaaaacta
caatcagtgacaaaatacttggcacaaaagggaaattcaccgggaagtca
ttaaaccacaatcgatttgtaagtgctctaaagtaggttggaagggtaga
attttaactctgagttttaacgctagacttaaaagACTTAAgatccaaaa
gttaaaaaatggtccagtaaggcttgaaatatagcctagaaaccaataaa
tccctcccagatcgaaataatcgatgaaatcaagttgaaggcctgaaatt
gacattctcgctcgaacttcgattttcgaaaaatggtaaattagccaaaa
gtgccaatgggccattcaagaaaatttttgtatacccccgtcggacgacg
tgcattttttaattttttctagcctcggaaataatttttcttttccagtt
ggtggtcggaaattccgatgaaaatctatgtagttttgcaaaatgcatcg
gaaattccactctattttgtcttttttagttcaattgccttggaaattca
tacattttcttctctcaccttagaaatttcgaattttggtgaaaacctTT
GCCCTCGGatatcctgtgtcgtccgcccccctgttacagacaaattctgg
aatggcccaatatgttatggcactgattgtagaagaCTAGAAACTGAACA
TACCTAAGTCAGCCAAGATGTGTTTTTCTCCTCTAACAGAAATCAAACCA
CACTCCACCTCTTTTTCAATCTTGTGAATCACAAACCGAAAATCTTCAGA
TTGATAACACCTGCACGCAGAGCGTCTCAATTGGACCATTCGGCGACGTA
AAGAATACGCGCGGAAAGAGAGGACTTCTCGTGTAGGAGCTATTTCTTGT
TTCTTTTGAGCATCAATAGTGaaagtttcta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036955XLOC_036955Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058664-exon-scaffold_312-1491911889:124026..124095TCONS_00058664-exon-scaffold_312-1491911889:124026..124095Clytia hemisphaericaexon
TCONS_00058664-exon-scaffold_312-1510915933:124026..124095TCONS_00058664-exon-scaffold_312-1510915933:124026..124095Clytia hemisphaericaexon
TCONS_00058664-exon-scaffold_312-1575043694:124026..124095TCONS_00058664-exon-scaffold_312-1575043694:124026..124095Clytia hemisphaericaexon
TCONS_00058664-exon-scaffold_312-1491911889:124925..125156TCONS_00058664-exon-scaffold_312-1491911889:124925..125156Clytia hemisphaericaexon
TCONS_00058664-exon-scaffold_312-1510915933:124925..125156TCONS_00058664-exon-scaffold_312-1510915933:124925..125156Clytia hemisphaericaexon
TCONS_00058664-exon-scaffold_312-1575043694:124925..125156TCONS_00058664-exon-scaffold_312-1575043694:124925..125156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_312supercontigscaffold_312:124026..125156 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.70099	3.51967	2.36219	0.928884	52.3265	49.3206	16.0434	22.4663	5.07895	11.7224	2.70244	2.69978	2.42912	2.41669	2.09656	3.24817	6.88529	6.4195	0	0	1.24174	0	2.79346	1.13956	36.318	23.7015	1.55324	0.295198	1.46648	0.961004
Blast
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BLAST of TCONS_00058664 vs. Swiss-Prot (Human)
Match: ASPM (Abnormal spindle-like microcephaly-associated protein OS=Homo sapiens GN=ASPM PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.420e-19
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = -3 
Query:    4 APTREVLSFRAYSLRRRMVQLRRSACRCYQSEDFRFVIHKIEKEVECGLISVRGEKHILADLGIKNQITKLLLSFNSLWLRIGLEV 261
            APT+E +S RAY+ R R+ +LRR+ACR + SE     I K+E E+E   + VR ++H+  D+G + ++   LLS+N LWLRIGLE 
Sbjct:  745 APTKEEMSLRAYTARCRLNRLRRAACRLFTSEKMVKAIKKLEIEIEARRLIVRKDRHLWKDVGERQKVLNWLLSYNPLWLRIGLET 830
The following BLAST results are available for this feature:
BLAST of TCONS_00058664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASPM3.420e-1946.51Abnormal spindle-like microcephaly-associated prot... [more]
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