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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058666 ID=TCONS_00058666|Name=TCONS_00058666|organism=Clytia hemisphaerica|type=transcript|length=760bp CTCTCATGTATCCGGCTATAATGGCATTGCCGGATGCAAGAGATTCTGAA ATcggttttacatttttcaaaatggggACTTCCTTGTCTTTGGAGTTGCA TAAAAAGGCGACATTTTTTATTGGAAAATCATTCAACTTGTTCAAGCAAG CAAGCCAATCAGCAGAATGAAGATTTGGAAAGCTTTGCTGCTTCTGGCAC TTTGTGCCTATGCAGTACATTGTACCGAAGAGAGCCAACAAGAAAATGCT CTCGAAGATCAGAAACAacaagatgaagaagaagaccAATCACAAgacat gatgacgtcatcacaagaTGATCAAGATGTTATGGAGCAAGATGAAAGCC CATTGGACAAAGTCAAAGATGAAGAAGTACAGGTTACAGCAGACCAGAAC GACCCGCAACCAAGAAAAAGACGTCGACGACGCCAACGAAGACGTCGAAG CCAACGACGAAGAAGTCAACGAAGCCGACGAAGACAACACGGTTCTCGAA GACGAAACGGTTCCCGAAGACGACATGGTTTCCGAAGACGACACAGTGGA TACCCATACGGCAGTTACCCTTAGGGTGGTTACCCTTACGGCGAATATCC TTATGGCGAATATCCTCACAACTAGCGCTACGGAAAATAATTCATTTCAC ACACGAAAatgataatttatttttattgggAATGGTGTTTGATGCCTGAT TTTTTGTAATATTAggaaaaaatttttatcttGGTAACTCGTaagaaata tcattttttc Run BLAST on NCBI protein sequence of TCONS_00058666-protein >TCONS_00058666-protein ID=TCONS_00058666-protein|Name=TCONS_00058666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MKIWKALLLLALCAYAVHCTEESQQENALEDQKQQDEEEDQSQDMMTSSQ DDQDVMEQDESPLDKVKDEEVQVTADQNDPQPRKRRRRRQRRRRSQRRRS QRSRRRQHGSRRRNGSRRRHGFRRRHSGYPYGSYP Run BLAST on NCBI transcript from alignment at scaffold_312:203131..204489+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058666 ID=TCONS_00058666|Name=TCONS_00058666|organism=Clytia hemisphaerica|type=transcript|length=1359bp|location=Sequence derived from alignment at scaffold_312:203131..204489+ (Clytia hemisphaerica) CTCTCATGTATCCGGCTATAATGGCATTGCCGGATGCAAGAGATTCTGAA
ATcggttttacatttttcaaaatggggACTTCCTTGTCTTTGGAGTTGCA
TAAAAAGGCGACATTTTTTATTGGAAAATCATTCAACTTGTTCAAGCAAG
CAAGCCAATCAGCAGAATGAAGATTTGGAAAGCTTTGCTGCTTCTGGCAC
TTTGTGCCTATGCAGTACATTGtaagtttttcaatttcttccACTTTATA
TCCAAAAAGAATCTTGTTGTTGTCAGGCTAGTACTTTAGAGATTTCACTA
TTTCAAGAATTATGGAATGAATATTATTAAAGCATTTCTTGTACAAAAAA
ATGTCCACATTTGAAGGATACCAAAATTATGTTTATCGTAAATAAATTTC
AGGTACCGAAGAGAGCCAACAAGAAAATGCTCTCGAAGATCAGAAACAac
aagatgaagaagaagaccAATCACAAgacatgatgacgtcatcacaagaT
GATCAAGATGTTATGGAGCAAGATGAAAGCCCATTGGACAAAGTCAAAGA
TGAAGAAGTACAGGTTACAGGTATGTTGCAAATACTACCATccatttgtt
tgtttgttggaGTTTTTTAATCAGTTTCTTGTTAAAgtggttcttatttt
ttgttcacttgaATCCTTTAGTCTAGGCCTTAAATTTCGGTTTAGTGGTC
AGCTTAGCCTTATCcatttcttaaaatctaatctAAAATCTAATCCTCTA
GTAGTTACTATGCTACGGTCTAAATTAGGCATCATGTAAGTTTATTTTCA
AGACTTTAAAGTGGCGATTCAAATGTTAGCCTTGAAGTTATCGATTCTTC
TCTAGGTTATCTTTAAAAATGATTCCCATACCAGTTTGATGCTTGACCCT
AGTTTTGTTATTCATAAGAAACTTTAATATGATAGATAATTGTGAGTAAT
CCGACCAAACGATATTTGTTTAAATTCTTTCAATACAGCAGACCAGAACG
ACCCGCAACCAAGAAAAAGACGTCGACGACGCCAACGAAGACGTCGAAGC
CAACGACGAAGAAGTCAACGAAGCCGACGAAGACAACACGGTTCTCGAAG
ACGAAACGGTTCCCGAAGACGACATGGTTTCCGAAGACGACACAGTGGAT
ACCCATACGGCAGTTACCCTTAGGGTGGTTACCCTTACGGCGAATATCCT
TATGGCGAATATCCTCACAACTAGCGCTACGGAAAATAATTCATTTCACA
CACGAAAatgataatttatttttattgggAATGGTGTTTGATGCCTGATT
TTTTGTAATATTAggaaaaaatttttatcttGGTAACTCGTaagaaatat
cattttttc Coding sequence (CDS) from alignment at scaffold_312:203131..204489+ >TCONS_00058666 ID=TCONS_00058666|Name=TCONS_00058666|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_312:203131..204489+ (Clytia hemisphaerica) ATGAAGATTTGGAAAGCTTTGCTGCTTCTGGCACTTTGTGCCTATGCAGT ACATTGTACCGAAGAGAGCCAACAAGAAAATGCTCTCGAAGATCAGAAAC AacaagatgaagaagaagaccAATCACAAgacatgatgacgtcatcacaa gaTGATCAAGATGTTATGGAGCAAGATGAAAGCCCATTGGACAAAGTCAA AGATGAAGAAGTACAGGTTACAGCAGACCAGAACGACCCGCAACCAAGAA AAAGACGTCGACGACGCCAACGAAGACGTCGAAGCCAACGACGAAGAAGT CAACGAAGCCGACGAAGACAACACGGTTCTCGAAGACGAAACGGTTCCCG AAGACGACATGGTTTCCGAAGACGACACAGTGGATACCCATACGGCAGTT ACCCTTAGATGAAGATTTGGAAAGCTTTGCTGCTTCTGGCACTTTGTGCC TATGCAGTACATTGTACCGAAGAGAGCCAACAAGAAAATGCTCTCGAAGA TCAGAAACAacaagatgaagaagaagaccAATCACAAgacatgatgacgt catcacaagaTGATCAAGATGTTATGGAGCAAGATGAAAGCCCATTGGAC AAAGTCAAAGATGAAGAAGTACAGGTTACAGCAGACCAGAACGACCCGCA ACCAAGAAAAAGACGTCGACGACGCCAACGAAGACGTCGAAGCCAACGAC GAAGAAGTCAACGAAGCCGACGAAGACAACACGGTTCTCGAAGACGAAAC GGTTCCCGAAGACGACATGGTTTCCGAAGACGACACAGTGGATACCCATA CGGCAGTTACCCTTAGATGAAGATTTGGAAAGCTTTGCTGCTTCTGGCAC TTTGTGCCTATGCAGTACATTGTACCGAAGAGAGCCAACAAGAAAATGCT CTCGAAGATCAGAAACAacaagatgaagaagaagaccAATCACAAgacat gatgacgtcatcacaagaTGATCAAGATGTTATGGAGCAAGATGAAAGCC CATTGGACAAAGTCAAAGATGAAGAAGTACAGGTTACAGCAGACCAGAAC GACCCGCAACCAAGAAAAAGACGTCGACGACGCCAACGAAGACGTCGAAG CCAACGACGAAGAAGTCAACGAAGCCGACGAAGACAACACGGTTCTCGAA GACGAAACGGTTCCCGAAGACGACATGGTTTCCGAAGACGACACAGTGGA TACCCATACGGCAGTTACCCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058666-exon-scaffold_312-1491911889:203131..203351 | TCONS_00058666-exon-scaffold_312-1491911889:203131..203351 | Clytia hemisphaerica | exon |
TCONS_00058666-exon-scaffold_312-1510915933:203131..203351 | TCONS_00058666-exon-scaffold_312-1510915933:203131..203351 | Clytia hemisphaerica | exon |
TCONS_00058666-exon-scaffold_312-1575043694:203131..203351 | TCONS_00058666-exon-scaffold_312-1575043694:203131..203351 | Clytia hemisphaerica | exon |
TCONS_00058666-exon-scaffold_312-1491911889:203533..203700 | TCONS_00058666-exon-scaffold_312-1491911889:203533..203700 | Clytia hemisphaerica | exon |
TCONS_00058666-exon-scaffold_312-1510915933:203533..203700 | TCONS_00058666-exon-scaffold_312-1510915933:203533..203700 | Clytia hemisphaerica | exon |
TCONS_00058666-exon-scaffold_312-1575043694:203533..203700 | TCONS_00058666-exon-scaffold_312-1575043694:203533..203700 | Clytia hemisphaerica | exon |
TCONS_00058666-exon-scaffold_312-1491911889:204119..204489 | TCONS_00058666-exon-scaffold_312-1491911889:204119..204489 | Clytia hemisphaerica | exon |
TCONS_00058666-exon-scaffold_312-1510915933:204119..204489 | TCONS_00058666-exon-scaffold_312-1510915933:204119..204489 | Clytia hemisphaerica | exon |
TCONS_00058666-exon-scaffold_312-1575043694:204119..204489 | TCONS_00058666-exon-scaffold_312-1575043694:204119..204489 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_312 | supercontig | scaffold_312:203131..204489 + |
Blast
The following BLAST results are available for this feature:
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