TCONS_00058672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058672
Unique NameTCONS_00058672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058672 ID=TCONS_00058672|Name=TCONS_00058672|organism=Clytia hemisphaerica|type=transcript|length=1328bp
aattaatcaattttGTCCCCTCAGCAGTAACTCCACCATCGACCACGGGC
ACTCTATTAGACATTGCATCTGAACCAAGTCCTGTCAACAATGGAGGTAT
CTCTCTCGACTTTCCAACATCCACAACTCCTGCTACTAACGACTCTGTCA
GCAAATTCATTTGCAAAAGCAATGGTATCCTTTTCGAGAACGACATCATC
CAGATTGGTATCAAATCTGAATACAGACAAGGCGTTGGACGTCTTGGTAT
ATTTTACGGTAACAAAACAACCGTACCATTAACAAACTTTTTGGTCCAAC
TTCACAACAACCCAGATGTTTCTCAAAAAATGGCGGTTGAACTTCAGCCA
ATCAGTAACGTCATCGACAATGGTGCGCAGATACAACAAATGATCAAATG
TGAAATTATTGATGTCTTTGATGAAATCCCCGTGCTTACTGTCTCTTTCA
GTGTTGGCACAGCACCACAACAACTGTTATTACAATTACCAGTTTTCTTG
ACCAAATGCTCTGTCTCTGCTGAAATGACCAATACTGACTTCTTTAACCG
ATGGAAAGGTCTATCCGCaccTGGTCAAGAAAGTCAAAAGATTTTCAACG
CAAACTTTCCTATCGATACTGAAGCTTCCAAACTCAAGCTTGTGGGCTGC
AGTATGGGATTACTAGAGGAAATCGATCCTAACCCAGACAATTTCGTCAC
CGCTGGTATCATACACACACGTCAAGGGCAAATCGGATATCTTCTACGTC
TCGAACCAAACATACCAGCACAGATGTATCGTTTAACAATTCGAGCATCA
CGAGCTGGTGTAGCTGACATTCTCACCAATGTTCTCCAAGATCAATTCTG
ATGAGCTCAAATAGACCTAAACCTAACCAAATCGAATCATACAGTATAAC
ttgtattgtttttttatcgACAACAGTGATGTATTCCACTCATGGAATGA
CGTTTTTTTACACGAAAAGGAGGTTGTATGTATATTATTGtcatgttatt
tttttctggtTTTTATAACGAGTAATAAGGTATTCGATGCATAATACCAA
TGGATTGTATTACGAATTTACCTGGAAATGACACTATGCAAATAAGATAT
TATACATGTTGTTGATATTGACATACAATATTAGGTGTCGATTTAAtgta
aagagaaaatattattcATGTGGTTTGACGGGTCTTTGCAAAACCTAGAT
CGGTGGATAATCTGGCTAAGGGGAAAGTATGTTTTGATAGTTTGCTTTGA
TAGTTTGCTTTAGAACtgtttcaatagaccttttcataaattacgtcacg
aatatcACTTACctcgtccccccccccc
Run BLAST on NCBI

protein sequence of TCONS_00058672-protein

>TCONS_00058672-protein ID=TCONS_00058672-protein|Name=TCONS_00058672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
LINFVPSAVTPPSTTGTLLDIASEPSPVNNGGISLDFPTSTTPATNDSVS
KFICKSNGILFENDIIQIGIKSEYRQGVGRLGIFYGNKTTVPLTNFLVQL
HNNPDVSQKMAVELQPISNVIDNGAQIQQMIKCEIIDVFDEIPVLTVSFS
VGTAPQQLLLQLPVFLTKCSVSAEMTNTDFFNRWKGLSAPGQESQKIFNA
NFPIDTEASKLKLVGCSMGLLEEIDPNPDNFVTAGIIHTRQGQIGYLLRL
EPNIPAQMYRLTIRASRAGVADILTNVLQDQF
Run BLAST on NCBI

transcript from alignment at scaffold_312:152162..160576-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058672 ID=TCONS_00058672|Name=TCONS_00058672|organism=Clytia hemisphaerica|type=transcript|length=8415bp|location=Sequence derived from alignment at scaffold_312:152162..160576- (Clytia hemisphaerica)
AATTAATCAATTTTGTCCCCTCAGCAGTAACTCCACCATCGACCACGGGC
ACTCTATTAGACATTGCATCTGAACCAAGTCCTGTCAACAATGGAGGTAT
CTCTCTCGACTTTCCAACATCCACAACTCCTGCTACTAACGACTCTGTCA
GCAAGTAAGTTTTTAAAAGTTCTTTCAATGAAAATGTTTATATATCTAAT
TCTACTCGGATTACTTTGACAAGTGCAGTTGATGCTCTCTAATTCGACAT
TCTATAATTTGATAAGCTCCCCTTTTCGATCAAATCAAAAGTCACCGTCA
AATTTCTTTAAGAAACTCTCATAAACGACGCTCTACTATTCGATATTCTA
TATTTCGATAAGCTCCCGTTTTCGATGAAAATTTGACGTCCCTTGAAGAT
GAGAGAGCGTCAACTGTAAAAATCTTTACGGGGTCGAACAAACCGAGTCA
TTAACGACAATTTTCGCGAATAAGAGGACAAATACTTCTCGTAATCTTAA
AAACTTAGGCGATTTATTGGAAATGAGATGAAAACTGCCTTAATTATGAC
AAATCTTATTTGGACCTCTTTGAAACGTTTGTTTTTTTTACTTAAAGAGA
GCTCTAAGGGACTCAAAAAAACACGAATGTTTTTATGAAAGTTTGTACAC
CCTAGAGTATGTGAACGGTTGATGTTCGGTAAACTGCTTCTTAATTAAAT
TTGTGCAGATATTAGGAGTAAAAAGTTTGTGAGATAATCCCTCAATCCTT
TCTTTGTCTAGATTCATTTGCAAAAGCAATGGTATCCTTTTCGAGAACGA
CATCATCCAGATTGGTATCAAATCTGAATACAGACAAGGCGTTGGTAGGG
AAATTTCTTTGTCTAACGTTGAGCCTGTTTAACACAATCGCTTGATGGAT
AAGTTCAAGTTTGATACACCTTCGTTTTGTCTATTCAAATTCCTCATACA
GTTTATCTGTTCTTTTAAATCTCTGAAAATCTGGCCTCCACTCCTGAAAT
CTGAGTTTTGCAAATTTAGACGTGTGATAAGCCGTGCTATCCACCACTTT
TAATTGTTAAGTCTTTTTAAAGTAAAGCTTCAAATGACTCAGCCTGAAAA
ATGCCCTGTCCTAACCATTAACAAATAAATTTTCCTTTCCTTTTCTAGGA
CGTCTTGGTATATTTTACGGTAACAAAACAACCGTACCATTAACAAACTT
TTTGGTCCAACTTCACAACAACCCAGATGTTTCTCAAAGTATGTTTTCAA
CTTTTCGTAAATTTCCTTCTAGAACGTCGTCCCTGAGTCCATGACTGAGA
TACCGGTTTTGTAACTTGAATATCAAAAATAACAAATCTACTATCAAAAC
AAGTTAAGTTTTTATTCCTGTACCTCTCTCAACAAATACCAAAAAAGTGA
AAACCAGAACAAAAAAAATGGAAATCAGTCTGAAATATGAAATTTATTAC
ATGAAGCATATAGCGTAATTGATCAAATGAATCTATTCTTTAAAAAAATG
TCTTCCCATAGAAATGGCGGTTGAACTTCAGCCAATCAGTAACGTCATCG
ACAATGGTGCGCAGATACAACAAATGATCAAATGTGAAATTATTGATGTC
TTTGATGAAATCCCCGTGCTTACTGTCTCTTTCAGGTAAGGGCTGTTTTT
TATGTGTCTTTCAGACACTTTTTTTAAAAAACTAATTTATAAGGACCAAG
AAATTTTCGAGAATAAAAGGACAAATAGTTTTCGTAAGCTTCAAAACTTT
GGCGATTTATTGGAAAGTGATGAAATTGCCTTAATTATGACAAATATTAC
CAAACTATCGTAGATATTGGATAGTTGTGGATGTGTTGTCTATATCTGTC
CGAAGATCTTCAATTTACACATTTAAAACCCGTCCACTATCATCTTTCTG
ATCTTTGATGACTTTTAAGTGGAAACTTTTTATTTTCTTTATCAAAAACA
ATGAGAATTAAAAATACACATTTTTTAGATGTTGGTGGAAGGAACTGTAC
TAAAATTTACCAATAATTTTCATTTCTAGAAATTCTCATTTCAACTTTGG
ATCGTAAAATCTTCTTTCAACTTTATATTTTCTTATTTTTACAGTGTTGG
CACAGCACCACAACAACTGTTATTACAATTACCAGTTTTCTTGACCAAAT
GCTCTGTCTCTGCTGAAATGACCAATACTGACTTCTTTAACCGATGGAAA
GGTCTATCCGCGTAAGTTGATTCGCTTTTTTTCATCATGATTTTATTGGT
TCTTCTTACAACAAGAAAGTTTTATATATTTTATATGTATGTGTAATAGA
AATGCTACGGTTCAAACTGATACGATGCGGACAACGGTGTCCGGACAATT
CCCCCCTGGGGAATCCCCCCCGGTGAATTCCCCCTTTGGTGAATTCTCAC
CCATATTATTTTCATATGTGTTTTTAAGTTTCGAAATCATGGACTGTAAC
CCCCGGGGGATACTAGGGTTGGCGAATGACGGGACCTTCGAAAATTGACC
CTTAGAGAGACTGATATTTTTGCTGAAAAGGTGACCCTTAGAGTGACTTT
TTGAATTTTTGTTTTTCGATTTTTGAAAAAAGTCATACCCTTAGAGACTT
TATTACAATTTTTTTCTCTGGAAATCAAAATTTTTTCTAAAAATCCTGAA
TTTTCCGCCCCTTAGAGAGACTAATTTAAAACTTTCAATCGAAACAAACC
TCCAATATTAGGATCAAGGATCTTTACAAAGTTTTAAGAATCACAATTCG
CTTATTTCAAATTACATGATTTTTTAGTTCACCAGGGGGGGGGGGGTTTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGGGGGGGGGGATTCACCGGGTGGGAATTTTCCGGGG
GGATTCACCGGGGGGAATTCACCGGGGGGGAATTGTCCGGGAATCGCGGA
CAACTAATGTAGTAATGATTGGTTAGGATTGGAGTAGTCCAGCTATATGA
CATTGATGATAAATAGATAGGAAAGCTGAGTATAGAGAAAGCTTGAAGAT
ATGGTTTATTTAGATAATAAAGGTGGCTTACTCGATATAATGTCAGAGAG
ATAGAGATATAAGAGCTAAAATTTGTCAAAGTGCTACCGGGTGCGCCACA
AAAAAGTTTCTCTCTTTGAAACTGATTTTCTCGAAATCGAAAAACTTTAA
AAGAATCATTCCTATTCCATTGGATAGAAGAAAGATAAACTTAAATTTTG
ATGGGTCATTGGATAAATTCGGTTCATTAGATCAAAAGTTATGCTCAATT
GAATAAAAAAGTTACTTTCAGAAAGTGCCCAAAAACTTTAAAAATCGACC
TATCAAAATTTCATTATAAAACTAAAGTCTATTCACGATAAGTGTGCACT
CTTTTTTCTTTTACCTATAACTTTTGAAGGGATTCTTCAATCTTTATAAA
TTTGGTATCATTGGAAAGAAATTAGTGAGTGAAACAATTTGAAATAAAAA
AGTCTTTAAAAAGATTCTAAAAATGAAGATGAAAATGAAGAAGAAAAAAA
TGAAGATCTTGTAGAAAAGGGCTATAACTATCATTTTCACCGAAGTAAAT
TCTTAATCATCGAACGTTATCCCTGTGAAAAAAATTCTCAAAAATAATCA
TTCAGTCAAAAGATATCAAACAAAGTTATAAGCTGATTGACGTCTAAAAA
CGCTGTTTTCTGCAGTTTTTTGCTGTTTTTTGGGGTCAATCACTTATTAA
CTTTGTATCATAACTTTATATTGATTAAATATTTTAATGAAATTTCTTCA
CAGTGATGATTTCCTAAGATCAAAGAATCTCTCCAGTGAAAATGAAAGTT
ATAGCACTTTTCTACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTT
CATTTTCATAATCTTTTTAAAGTTTTTTTTATTTCAAATTGATTCACTCA
CTAATATCTTTCCAATGATACCAAATTTATAAAGATTGAAGAATTCCTTC
AAAAGTTATAGGTAAATGAAAAAAGAGTGCACACTTATCGTGAATAGACT
TTAGTAATTGCAATAGGCTTTACATGATTAAGAGCATTTTTCAGTAACAA
AACATAAATTTTGAAACTGAAGGGTCGAAAGGGTTAAAAATCTTCATCCA
AATCAATTTATTTTAGTTTTACCGAAATTTCCCTCAGATTTTTGGTTCTA
GACTGGATAAAGTCTATGTAAGGCTGAATCTAGCTCGAAACCCATATTTG
ATGTATTTTTAAAATTTTACCAGATTATTTGGCCTTTTTCGACGAATTTT
CTTCCTTTCATTGAAATTCAACCTTCCTTTAAATAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAACTAATTATCATTTTT
GATGATTAAAACGAAAATACTGATATATCATGTAATTATGCTTCTGTTTA
ATTTGATAGGTAAATTTTTAACGTTTTTGAGCATTTTCCGAAAGTAACTT
TTTTATTCAATTGAACACAACTTTAGATCTAATGAATCGAATTTAATAAA
TGACCCATCAAAATTTAAGTTTATCTTTCTTCTTTCTAATGAAATAGGAA
TGGTTCTTTTAAAACTTTTAGATTTCGAGAAAATTCGTTTAAAAGAGAGA
AACTTTTTTGTGGCGCACCCGGTAGTTAATTGCCCCCGCAACGAGCGCAG
CGAGTGAGGAGGCACTCATAGCTTCAGGCGCAAGGATTGTTGGACTGGAA
TCTCGCATTTTTGTTTTGTTGTTGTTGTCGCGCAAGCCTACCCGTAGTTA
GTCTCTTCCGTAAATGTTCGGTATCTTCCGCCGGTTTTTTACAGCTTTTA
TTTTTCACGTCAAGCGCCGCGGGAATTTTACACTGCTTTTTAGGGCGGGT
TTTCATTTCTTCTTATATATAAAATTTGTCCGATTGGTTAACATTCAGGA
AAGGAAGAAAATGTAGATGCGTGGAAATTTCTGGAAGAATTCAAAAACAA
GTAGTCTCTCCTGCAGTCAAGACGTATTATTTGTGACTTTGAGTGAGATA
CAACTAGATATAAATACCTTACATTTATTACTTCCAAGTTCTAAGTGATT
ACAATAATGTGAACGAATTGATGTTTAATTTTTACCACAGAGCGATAATG
AACAATGATTAAAATGATAATAGTAGAACACCAGGGGTAGAACAATAATG
AATGAATAATGAACAAAAGTGATTATTGTTGGTGGTTGAATTGGCAACAA
AATTCTAACACTCGTCATTCAGCATACTCTACTCCATCAAGAATGCATAA
AGATCCTGTATTATAGTACTTTGACAGTAAGTACATTTTTTTCATTAAAA
GTGTGCTTTTTTTATAGATCTATTATGCAGTTTTATGTTTAGCATTTGTT
CTTGTTGACACTTACCAAGCACTATTTGGGAAATTATTATCGGAAATTGA
AAGAACCTTTTGTGTACTATTTTGAGGAAATTTCAGTACACTCATCATAT
AGAATCTAATTTCATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAATTAGTTT
TTACAAGCATTGTACTAGCGGGTGGCAGTTAGTGAAAGCTATGGCTAGTA
AGTTATAAAATACTAAATATTAGGAAATAAAAAACTCTCTCGATCAAACA
GCCTTGTTGATTCCTTCCTCGTCTGTCACGAGGGAGAAATGGCGGGTAAA
CACTCTATATTTAAAAACCTTTCTTGTTAGAACACACCCCAACTCTTCTG
CTTCATAAATTGTAGACTTTTTTAATCAAAACTTAATGATTTTGAATTCA
GGTTCGCGCTCTTTGTTGTTTACTCTTTGTTTTCATTTTCAGACCTGGTC
AAGAAAGTCAAAAGATTTTCAACGCAAACTTTCCTATCGATACTGAAGCT
TCCAAACTCAAGGTTACTACACTTTCTAAATCAAGAAACACACTCTCAAC
TATTAAAATTTCAATCTTTATAATCATTAGCAGTTATAATTGTTACTACT
ATATAACTGAAATTTTAAATACAAAATACTTCATAAGGTTTTGAGTGAGA
GTCTAGTACATCTTGTCTTGGCTTTTGTTGATCTCTAAAGACCTCAAACA
ACCTTGGACCCCTTTCGATTATATATTTTTTATCTAGTACGACGAAGAAA
CGTTTAATTGTATTATCATGTTATTTTTCAGCTTGTGGGCTGCAGTATGG
GATTACTAGAGGAAATCGATCCTAACCCAGACAATTTCGTCACCGCTGGT
ATCATACACACACGTCAAGGGCAAATCGGATATCTTCTACGTCTCGAACC
AAACATACCAGCACAGGTTTGTCTTACGATGTTATGTTTACATTGGATAT
TACCAAATGTTATCACCTAAAGAAAGAATGAATGCACATTGTTAGATTTG
TTTACAAAACTGTCGTCTGCAATTAAATGTTTCTTTATTGCACTTATAAG
CATATATAGTTTCAGATATGGCAAAAATTCAAGCATAGGCTAAGAGTTAC
TTCGAGCCTACGAAATATATATTTTCCAATTTTGGCTGTTTTTGATTTAA
GGAATTTCCCTCAGGATATAAGCCTCCTTCAGCCTTGCCAATCTCTTGAC
CTAAGCATCTCTGAATCAGTTGTTGGATTTGTGTATGCGTGTAAAAGTAA
ATCGATTTCTCACATGAAACGCAAATCTTGTTCGGGCTATGAAAGGCTCG
AACTTTAGAGAGAGTACTTAGTATAAATTGAATGACTCCTTAACAGAAAA
AGCAAGTAGGACTTCGAAGTTCGTAATTTCGTTTAAAAAAAAAGATGGAG
CACATTATTAAACTTATCAAACCTAGCCCTGCCAGGGAATTAGACTCGAT
CTTACTAAAGGTTTGAACGGGTTCAGTTGTCTGTGTCCACACGATGACAT
AATCCGTTTCAATCACTTCAAACGTTTTCTTCTAACATACAAATACTTAG
CACTTCCTCAATTAGTGGGCCAATCACGGGTCTTCGGCAACCAAGGTTGT
ACTGTGTTGGCCTCGCCTCAAGTTAAGATTTGCTATTAATTTCCTGCCCT
GGACCATAATCAGTTACAGAAAATGCTGATTGACTGATTGATACTTTATT
TACTTTATAGATGTATCGTTTAACAATTCGAGCATCACGAGCTGGTGTAG
CTGACATTCTCACCAATGTTCTCCAAGATCAATTCTGATGAGCTCAAATA
GACCTAAACCTAACCAAATCGAATCATACAGTATAACTTGTATTGTTTTT
TTATCGACAACAGTGATGTATTCCACTCATGGAATGACGTTTTTTTACAC
GAAAAGGAGGTTGTATGTATATTATTGTCATGTTATTTTTTTCTGGTTTT
TATAACGAGTAATAAGGTATTCGATGCATAATACCAATGGATTGTATTAC
GAATTTACCTGGAAATGACACTATGCAAATAAGATATTATACATGTTGTT
GATATTGACATACAATATTAGGTGTCGATTTAATGTAAAGAGAAAATATT
ATTCATGTGGTTTGACGGGTCTTTGCAAAACCTAGATCGGTGGATAATCT
GGCTAAGGGGAAAGTATGTTTTGATAGTTTGCTTTGATAGTTTGCTTTAG
AACTGTTTCAATAGACCTTTTCATAAATTACGTCACGAATATCACTTACC
TCGTCCCCCCCCCCC

Coding sequence (CDS) from alignment at scaffold_312:152162..160576-

>TCONS_00058672 ID=TCONS_00058672|Name=TCONS_00058672|organism=Clytia hemisphaerica|type=CDS|length=6792bp|location=Sequence derived from alignment at scaffold_312:152162..160576- (Clytia hemisphaerica)
ATGTATCGTTTAACAATTCGAGCATCACGAGCTGGTGTAGCTGACATTCT
CACCAATGTTCTCCAAGATCAATTCTGACTTGTGGGCTGCAGTATGGGAT
TACTAGAGGAAATCGATCCTAACCCAGACAATTTCGTCACCGCTGGTATC
ATACACACACGTCAAGGGCAAATCGGATATCTTCTACGTCTCGAACCAAA
CATACCAGCACAGACCTGGTCAAGAAAGTCAAAAGATTTTCAACGCAAAC
TTTCCTATCGATACTGAAGCTTCCAAACTCAAGTGTTGGCACAGCACCAC
AACAACTGTTATTACAATTACCAGTTTTCTTGACCAAATGCTCTGTCTCT
GCTGAAATGACCAATACTGACTTCTTTAACCGATGGAAAGGTCTATCCGC
AAATGGCGGTTGAACTTCAGCCAATCAGTAACGTCATCGACAATGGTGCG
CAGATACAACAAATGATCAAATGTGAAATTATTGATGTCTTTGATGAAAT
CCCCGTGCTTACTGTCTCTTTCAGGACGTCTTGGTATATTTTACGGTAAC
AAAACAACCGTACCATTAACAAACTTTTTGGTCCAACTTCACAACAACCC
AGATGTTTCTCAAAATTCATTTGCAAAAGCAATGGTATCCTTTTCGAGAA
CGACATCATCCAGATTGGTATCAAATCTGAATACAGACAAGGCGTTGTTA
ATCAATTTTGTCCCCTCAGCAGTAACTCCACCATCGACCACGGGCACTCT
ATTAGACATTGCATCTGAACCAAGTCCTGTCAACAATGGAGGTATCTCTC
TCGACTTTCCAACATCCACAACTCCTGCTACTAACGACTCTGTCAGCAAA
TGTATCGTTTAACAATTCGAGCATCACGAGCTGGTGTAGCTGACATTCTC
ACCAATGTTCTCCAAGATCAATTCTGACTTGTGGGCTGCAGTATGGGATT
ACTAGAGGAAATCGATCCTAACCCAGACAATTTCGTCACCGCTGGTATCA
TACACACACGTCAAGGGCAAATCGGATATCTTCTACGTCTCGAACCAAAC
ATACCAGCACAGACCTGGTCAAGAAAGTCAAAAGATTTTCAACGCAAACT
TTCCTATCGATACTGAAGCTTCCAAACTCAAGTGTTGGCACAGCACCACA
ACAACTGTTATTACAATTACCAGTTTTCTTGACCAAATGCTCTGTCTCTG
CTGAAATGACCAATACTGACTTCTTTAACCGATGGAAAGGTCTATCCGCA
AATGGCGGTTGAACTTCAGCCAATCAGTAACGTCATCGACAATGGTGCGC
AGATACAACAAATGATCAAATGTGAAATTATTGATGTCTTTGATGAAATC
CCCGTGCTTACTGTCTCTTTCAGGACGTCTTGGTATATTTTACGGTAACA
AAACAACCGTACCATTAACAAACTTTTTGGTCCAACTTCACAACAACCCA
GATGTTTCTCAAAATTCATTTGCAAAAGCAATGGTATCCTTTTCGAGAAC
GACATCATCCAGATTGGTATCAAATCTGAATACAGACAAGGCGTTGTTAA
TCAATTTTGTCCCCTCAGCAGTAACTCCACCATCGACCACGGGCACTCTA
TTAGACATTGCATCTGAACCAAGTCCTGTCAACAATGGAGGTATCTCTCT
CGACTTTCCAACATCCACAACTCCTGCTACTAACGACTCTGTCAGCAAAT
GTATCGTTTAACAATTCGAGCATCACGAGCTGGTGTAGCTGACATTCTCA
CCAATGTTCTCCAAGATCAATTCTGACTTGTGGGCTGCAGTATGGGATTA
CTAGAGGAAATCGATCCTAACCCAGACAATTTCGTCACCGCTGGTATCAT
ACACACACGTCAAGGGCAAATCGGATATCTTCTACGTCTCGAACCAAACA
TACCAGCACAGACCTGGTCAAGAAAGTCAAAAGATTTTCAACGCAAACTT
TCCTATCGATACTGAAGCTTCCAAACTCAAGTGTTGGCACAGCACCACAA
CAACTGTTATTACAATTACCAGTTTTCTTGACCAAATGCTCTGTCTCTGC
TGAAATGACCAATACTGACTTCTTTAACCGATGGAAAGGTCTATCCGCAA
ATGGCGGTTGAACTTCAGCCAATCAGTAACGTCATCGACAATGGTGCGCA
GATACAACAAATGATCAAATGTGAAATTATTGATGTCTTTGATGAAATCC
CCGTGCTTACTGTCTCTTTCAGGACGTCTTGGTATATTTTACGGTAACAA
AACAACCGTACCATTAACAAACTTTTTGGTCCAACTTCACAACAACCCAG
ATGTTTCTCAAAATTCATTTGCAAAAGCAATGGTATCCTTTTCGAGAACG
ACATCATCCAGATTGGTATCAAATCTGAATACAGACAAGGCGTTGTTAAT
CAATTTTGTCCCCTCAGCAGTAACTCCACCATCGACCACGGGCACTCTAT
TAGACATTGCATCTGAACCAAGTCCTGTCAACAATGGAGGTATCTCTCTC
GACTTTCCAACATCCACAACTCCTGCTACTAACGACTCTGTCAGCAAATG
TATCGTTTAACAATTCGAGCATCACGAGCTGGTGTAGCTGACATTCTCAC
CAATGTTCTCCAAGATCAATTCTGACTTGTGGGCTGCAGTATGGGATTAC
TAGAGGAAATCGATCCTAACCCAGACAATTTCGTCACCGCTGGTATCATA
CACACACGTCAAGGGCAAATCGGATATCTTCTACGTCTCGAACCAAACAT
ACCAGCACAGACCTGGTCAAGAAAGTCAAAAGATTTTCAACGCAAACTTT
CCTATCGATACTGAAGCTTCCAAACTCAAGTGTTGGCACAGCACCACAAC
AACTGTTATTACAATTACCAGTTTTCTTGACCAAATGCTCTGTCTCTGCT
GAAATGACCAATACTGACTTCTTTAACCGATGGAAAGGTCTATCCGCAAA
TGGCGGTTGAACTTCAGCCAATCAGTAACGTCATCGACAATGGTGCGCAG
ATACAACAAATGATCAAATGTGAAATTATTGATGTCTTTGATGAAATCCC
CGTGCTTACTGTCTCTTTCAGGACGTCTTGGTATATTTTACGGTAACAAA
ACAACCGTACCATTAACAAACTTTTTGGTCCAACTTCACAACAACCCAGA
TGTTTCTCAAAATTCATTTGCAAAAGCAATGGTATCCTTTTCGAGAACGA
CATCATCCAGATTGGTATCAAATCTGAATACAGACAAGGCGTTGTTAATC
AATTTTGTCCCCTCAGCAGTAACTCCACCATCGACCACGGGCACTCTATT
AGACATTGCATCTGAACCAAGTCCTGTCAACAATGGAGGTATCTCTCTCG
ACTTTCCAACATCCACAACTCCTGCTACTAACGACTCTGTCAGCAAATGT
ATCGTTTAACAATTCGAGCATCACGAGCTGGTGTAGCTGACATTCTCACC
AATGTTCTCCAAGATCAATTCTGACTTGTGGGCTGCAGTATGGGATTACT
AGAGGAAATCGATCCTAACCCAGACAATTTCGTCACCGCTGGTATCATAC
ACACACGTCAAGGGCAAATCGGATATCTTCTACGTCTCGAACCAAACATA
CCAGCACAGACCTGGTCAAGAAAGTCAAAAGATTTTCAACGCAAACTTTC
CTATCGATACTGAAGCTTCCAAACTCAAGTGTTGGCACAGCACCACAACA
ACTGTTATTACAATTACCAGTTTTCTTGACCAAATGCTCTGTCTCTGCTG
AAATGACCAATACTGACTTCTTTAACCGATGGAAAGGTCTATCCGCAAAT
GGCGGTTGAACTTCAGCCAATCAGTAACGTCATCGACAATGGTGCGCAGA
TACAACAAATGATCAAATGTGAAATTATTGATGTCTTTGATGAAATCCCC
GTGCTTACTGTCTCTTTCAGGACGTCTTGGTATATTTTACGGTAACAAAA
CAACCGTACCATTAACAAACTTTTTGGTCCAACTTCACAACAACCCAGAT
GTTTCTCAAAATTCATTTGCAAAAGCAATGGTATCCTTTTCGAGAACGAC
ATCATCCAGATTGGTATCAAATCTGAATACAGACAAGGCGTTGTTAATCA
ATTTTGTCCCCTCAGCAGTAACTCCACCATCGACCACGGGCACTCTATTA
GACATTGCATCTGAACCAAGTCCTGTCAACAATGGAGGTATCTCTCTCGA
CTTTCCAACATCCACAACTCCTGCTACTAACGACTCTGTCAGCAAATGTA
TCGTTTAACAATTCGAGCATCACGAGCTGGTGTAGCTGACATTCTCACCA
ATGTTCTCCAAGATCAATTCTGACTTGTGGGCTGCAGTATGGGATTACTA
GAGGAAATCGATCCTAACCCAGACAATTTCGTCACCGCTGGTATCATACA
CACACGTCAAGGGCAAATCGGATATCTTCTACGTCTCGAACCAAACATAC
CAGCACAGACCTGGTCAAGAAAGTCAAAAGATTTTCAACGCAAACTTTCC
TATCGATACTGAAGCTTCCAAACTCAAGTGTTGGCACAGCACCACAACAA
CTGTTATTACAATTACCAGTTTTCTTGACCAAATGCTCTGTCTCTGCTGA
AATGACCAATACTGACTTCTTTAACCGATGGAAAGGTCTATCCGCAAATG
GCGGTTGAACTTCAGCCAATCAGTAACGTCATCGACAATGGTGCGCAGAT
ACAACAAATGATCAAATGTGAAATTATTGATGTCTTTGATGAAATCCCCG
TGCTTACTGTCTCTTTCAGGACGTCTTGGTATATTTTACGGTAACAAAAC
AACCGTACCATTAACAAACTTTTTGGTCCAACTTCACAACAACCCAGATG
TTTCTCAAAATTCATTTGCAAAAGCAATGGTATCCTTTTCGAGAACGACA
TCATCCAGATTGGTATCAAATCTGAATACAGACAAGGCGTTGTTAATCAA
TTTTGTCCCCTCAGCAGTAACTCCACCATCGACCACGGGCACTCTATTAG
ACATTGCATCTGAACCAAGTCCTGTCAACAATGGAGGTATCTCTCTCGAC
TTTCCAACATCCACAACTCCTGCTACTAACGACTCTGTCAGCAAATGTAT
CGTTTAACAATTCGAGCATCACGAGCTGGTGTAGCTGACATTCTCACCAA
TGTTCTCCAAGATCAATTCTGACTTGTGGGCTGCAGTATGGGATTACTAG
AGGAAATCGATCCTAACCCAGACAATTTCGTCACCGCTGGTATCATACAC
ACACGTCAAGGGCAAATCGGATATCTTCTACGTCTCGAACCAAACATACC
AGCACAGACCTGGTCAAGAAAGTCAAAAGATTTTCAACGCAAACTTTCCT
ATCGATACTGAAGCTTCCAAACTCAAGTGTTGGCACAGCACCACAACAAC
TGTTATTACAATTACCAGTTTTCTTGACCAAATGCTCTGTCTCTGCTGAA
ATGACCAATACTGACTTCTTTAACCGATGGAAAGGTCTATCCGCAAATGG
CGGTTGAACTTCAGCCAATCAGTAACGTCATCGACAATGGTGCGCAGATA
CAACAAATGATCAAATGTGAAATTATTGATGTCTTTGATGAAATCCCCGT
GCTTACTGTCTCTTTCAGGACGTCTTGGTATATTTTACGGTAACAAAACA
ACCGTACCATTAACAAACTTTTTGGTCCAACTTCACAACAACCCAGATGT
TTCTCAAAATTCATTTGCAAAAGCAATGGTATCCTTTTCGAGAACGACAT
CATCCAGATTGGTATCAAATCTGAATACAGACAAGGCGTTGTTAATCAAT
TTTGTCCCCTCAGCAGTAACTCCACCATCGACCACGGGCACTCTATTAGA
CATTGCATCTGAACCAAGTCCTGTCAACAATGGAGGTATCTCTCTCGACT
TTCCAACATCCACAACTCCTGCTACTAACGACTCTGTCAGCAAATGTATC
GTTTAACAATTCGAGCATCACGAGCTGGTGTAGCTGACATTCTCACCAAT
GTTCTCCAAGATCAATTCTGACTTGTGGGCTGCAGTATGGGATTACTAGA
GGAAATCGATCCTAACCCAGACAATTTCGTCACCGCTGGTATCATACACA
CACGTCAAGGGCAAATCGGATATCTTCTACGTCTCGAACCAAACATACCA
GCACAGACCTGGTCAAGAAAGTCAAAAGATTTTCAACGCAAACTTTCCTA
TCGATACTGAAGCTTCCAAACTCAAGTGTTGGCACAGCACCACAACAACT
GTTATTACAATTACCAGTTTTCTTGACCAAATGCTCTGTCTCTGCTGAAA
TGACCAATACTGACTTCTTTAACCGATGGAAAGGTCTATCCGCAAATGGC
GGTTGAACTTCAGCCAATCAGTAACGTCATCGACAATGGTGCGCAGATAC
AACAAATGATCAAATGTGAAATTATTGATGTCTTTGATGAAATCCCCGTG
CTTACTGTCTCTTTCAGGACGTCTTGGTATATTTTACGGTAACAAAACAA
CCGTACCATTAACAAACTTTTTGGTCCAACTTCACAACAACCCAGATGTT
TCTCAAAATTCATTTGCAAAAGCAATGGTATCCTTTTCGAGAACGACATC
ATCCAGATTGGTATCAAATCTGAATACAGACAAGGCGTTGTTAATCAATT
TTGTCCCCTCAGCAGTAACTCCACCATCGACCACGGGCACTCTATTAGAC
ATTGCATCTGAACCAAGTCCTGTCAACAATGGAGGTATCTCTCTCGACTT
TCCAACATCCACAACTCCTGCTACTAACGACTCTGTCAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036961XLOC_036961Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058672-exon-scaffold_312-1575043694:160423..160576TCONS_00058672-exon-scaffold_312-1575043694:160423..160576Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1575043694:159733..159815TCONS_00058672-exon-scaffold_312-1575043694:159733..159815Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1575043694:159339..159428TCONS_00058672-exon-scaffold_312-1575043694:159339..159428Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1575043694:158942..159065TCONS_00058672-exon-scaffold_312-1575043694:158942..159065Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1575043694:158366..158482TCONS_00058672-exon-scaffold_312-1575043694:158366..158482Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1575043694:153915..153984TCONS_00058672-exon-scaffold_312-1575043694:153915..153984Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1575043694:153511..153645TCONS_00058672-exon-scaffold_312-1575043694:153511..153645Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1575043694:152162..152716TCONS_00058672-exon-scaffold_312-1575043694:152162..152716Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1510915933:160423..160576TCONS_00058672-exon-scaffold_312-1510915933:160423..160576Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1510915933:159733..159815TCONS_00058672-exon-scaffold_312-1510915933:159733..159815Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1510915933:159339..159428TCONS_00058672-exon-scaffold_312-1510915933:159339..159428Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1510915933:158942..159065TCONS_00058672-exon-scaffold_312-1510915933:158942..159065Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1510915933:158366..158482TCONS_00058672-exon-scaffold_312-1510915933:158366..158482Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1510915933:153915..153984TCONS_00058672-exon-scaffold_312-1510915933:153915..153984Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1510915933:153511..153645TCONS_00058672-exon-scaffold_312-1510915933:153511..153645Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1510915933:152162..152716TCONS_00058672-exon-scaffold_312-1510915933:152162..152716Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1491911889:160423..160576TCONS_00058672-exon-scaffold_312-1491911889:160423..160576Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1491911889:159733..159815TCONS_00058672-exon-scaffold_312-1491911889:159733..159815Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1491911889:159339..159428TCONS_00058672-exon-scaffold_312-1491911889:159339..159428Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1491911889:158942..159065TCONS_00058672-exon-scaffold_312-1491911889:158942..159065Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1491911889:158366..158482TCONS_00058672-exon-scaffold_312-1491911889:158366..158482Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1491911889:153915..153984TCONS_00058672-exon-scaffold_312-1491911889:153915..153984Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1491911889:153511..153645TCONS_00058672-exon-scaffold_312-1491911889:153511..153645Clytia hemisphaericaexon
TCONS_00058672-exon-scaffold_312-1491911889:152162..152716TCONS_00058672-exon-scaffold_312-1491911889:152162..152716Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058672-proteinTCONS_00058672-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_312supercontigscaffold_312:152162..160576 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.8047	53.8887	88.6318	91.2428	100.348	75.2081	85.8847	100.095	58.9913	73.6328	54.3776	45.8835	49.6643	47.628	47.078	56.5498	69.8551	68.8182	40.2413	45.2175	53.3074	60.9592	43.8407	51.2596	42.6523	48.4561	57.5157	48.7548	66.9773	58.6555
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008152Clathrin_a/b/g-adaptin_app_Ig
IPR003164Clathrin_a-adaptin_app_sub_C
IPR009028Coatomer/calthrin_app_sub_C
IPR013041Coatomer/clathrin_app_Ig-like
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0030131clathrin adaptor complex
GO:0030117membrane coat
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030131 clathrin adaptor complex
cellular_component GO:0030117 membrane coat
Blast
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BLAST of TCONS_00058672 vs. Swiss-Prot (Human)
Match: AP2A2 (AP-2 complex subunit alpha-2 OS=Homo sapiens GN=AP2A2 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 2.391e-70
Identity = 117/240 (48.75%), Postives = 160/240 (66.67%), Query Frame = 3 
Query:  129 PATNDSVSKFICKSNGILFENDIIQIGIKSEYRQGVGRLGIFYGNKTTVPLTNFLVQLHNNPDVSQKMAVELQPISNVIDNGAQIQQMIKCEIIDVFDEIPVLTVSFSVGTAPXXXXXXXPVFLTKCSVSAEMTNTDFFNRWKGLSAPGQESQKIFNANFPIDTEASKLKLVGCSMGLLEEIDPNPDNFVTAGIIHTRQGQIGYLLRLEPNIPAQMYRLTIRASRAGVADILTNVLQDQF 848
            P + D+ ++F+CK+NG+LFEN ++QIG+KSE+RQ +GR+ IFYGNKT+    NF   L  + D+   + ++ +P+   ++ GAQ+QQ++  E +  F E PVL + F  G   Q + +QLP+ L K     EM + DFF RWK LS P QE Q IF A  P+DTE +K K++G    LLEE+DPNP NFV AGIIHT+  QIG LLRLEPN+ AQMYRLT+R S+  V+  L  +L  QF
Sbjct:  700 PGSEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICSDDLQPNLNLQTKPVDPTVEGGAQVQQVVNIECVSDFTEAPVLNIQFRYGGTFQNVSVQLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEVTKAKIIGFGSALLEEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKEAVSQRLCELLSAQF 939
The following BLAST results are available for this feature:
BLAST of TCONS_00058672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP2A22.391e-7048.75AP-2 complex subunit alpha-2 OS=Homo sapiens GN=AP... [more]
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