TCONS_00058679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058679
Unique NameTCONS_00058679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058679 ID=TCONS_00058679|Name=TCONS_00058679|organism=Clytia hemisphaerica|type=transcript|length=789bp
tagatcaattatgatagattataattcctttgagagtccctagaaaccag
aatgcattgcatatatctaaatccgatatcgtctattgatgcaaaatgac
ccttgaaaccctgaaaattgatgcaaaatgacGCTTGAAACCCTGAaaat
tgatgcaaaatgacccttgaaaccctgaaaattgatgcaaaatgacactT
GAAACCCTGAaaattgatgcaaaatgacactTGAAACCCTGAAAATTGAT
ACAAAATGAcacttgaaacccttgaaaattgatgcaaaatgacactTGAA
ACCCTGAaaattgatgcaaaatgacactTGAAACCCTGAaaattgatgca
aaatgacactTGAAACCCTGAaaattgatgcaaaatgacacaCTTGAAAC
CCTGAAAATTGAAGCAAAATGAcacttgaaacccttgaaatggCTCCTAA
AAATAAAGGTGGCCACCATGAATGACAAACTATGAAAACGACTTAAGATG
ATGTAAGCCTGAAAATCAAGAACAATGAGGGTTGTAGGAAGCATTTGATA
TTGTGAAAGGGCCTGATGTTTAGTCACGCCACCGTGAGGGGCTTAAAGTT
TTAGGTTCAAGATGATGCactcaaaatgaaagtttgCTAGGAGGTTACTG
GTAACCACGGCAGTGAAATTAGTATGGCTGATACATCAGAAATTCGTTTT
ACCAACCAGGTTGCTGCATTTCTTTCGCGTGGACCATAGTCTCTCTGCTT
TGCTTTCTTGGGTATGGGTGCTTCAGTGTATATGACAAC
Run BLAST on NCBI

protein sequence of TCONS_00058679-protein

>TCONS_00058679-protein ID=TCONS_00058679-protein|Name=TCONS_00058679-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MLPTTLIVLDFQAYIILSRFHSLSFMVATFIFRSHFKGFKCHFASIFRVS
SVSFCINFQGFKCHFASIFRVSSVILHQFSGFQVSFCINFQGFQVSFCIN
FQGFKCHFASIFRVSSVILHQFSGFQGSFCINFQGFKRHFASIFRVSRVI
LHQ
Run BLAST on NCBI

transcript from alignment at scaffold_312:114654..115442

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058679 ID=TCONS_00058679|Name=TCONS_00058679|organism=Clytia hemisphaerica|type=transcript|length=789bp|location=Sequence derived from alignment at scaffold_312:114654..115442 (Clytia hemisphaerica)
GTTGTCATATACACTGAAGCACCCATACCCAAGAAAGCAAAGCAGAGAGA
CTATGGTCCACGCGAAAGAAATGCAGCAACCTGGTTGGTAAAACGAATTT
CTGATGTATCAGCCATACTAATTTCACTGCCGTGGTTACCAGTAACCTCC
TAGcaaactttcattttgagtGCATCATCTTGAACCTAAAACTTTAAGCC
CCTCACGGTGGCGTGACTAAACATCAGGCCCTTTCACAATATCAAATGCT
TCCTACAACCCTCATTGTTCTTGATTTTCAGGCTTACATCATCTTAAGTC
GTTTTCATAGTTTGTCATTCATGGTGGCCACCTTTATTTTTAGGAGccat
ttcaagggtttcaagtgTCATTTTGCTTCAATTTTCAGGGTTTCAAGtgt
gtcattttgcatcaatttTCAGGGTTTCAagtgtcattttgcatcaattt
TCAGGGTTTCAagtgtcattttgcatcaatttTCAGGGTTTCAagtgtca
ttttgcatcaattttcaagggtttcaagtgTCATTTTGTATCAATTTTCA
GGGTTTCAagtgtcattttgcatcaatttTCAGGGTTTCAagtgtcattt
tgcatcaattttcagggtttcaagggtcattttgcatcaatttTCAGGGT
TTCAAGCgtcattttgcatcaattttcagggtttcaagggtcattttgca
tcaatagacgatatcggatttagatatatgcaatgcattctggtttctag
ggactctcaaaggaattataatctatcataattgatcta

Coding sequence (CDS) from alignment at scaffold_312:114654..115442

>TCONS_00058679 ID=TCONS_00058679|Name=TCONS_00058679|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_312:114654..115442 (Clytia hemisphaerica)
ATGCTTCCTACAACCCTCATTGTTCTTGATTTTCAGGCTTACATCATCTT
AAGTCGTTTTCATAGTTTGTCATTCATGGTGGCCACCTTTATTTTTAGGA
GccatttcaagggtttcaagtgTCATTTTGCTTCAATTTTCAGGGTTTCA
AGtgtgtcattttgcatcaatttTCAGGGTTTCAagtgtcattttgcatc
aatttTCAGGGTTTCAagtgtcattttgcatcaatttTCAGGGTTTCAag
tgtcattttgcatcaattttcaagggtttcaagtgTCATTTTGTATCAAT
TTTCAGGGTTTCAagtgtcattttgcatcaatttTCAGGGTTTCAagtgt
cattttgcatcaattttcagggtttcaagggtcattttgcatcaatttTC
AGGGTTTCAAGCgtcattttgcatcaattttcagggtttcaagggtcatt
ttgcatcaatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036968XLOC_036968Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058679-proteinTCONS_00058679-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058679-exon-scaffold_312-1491911889:114654..115442TCONS_00058679-exon-scaffold_312-1491911889:114654..115442Clytia hemisphaericaexon
TCONS_00058679-exon-scaffold_312-1510915933:114654..115442TCONS_00058679-exon-scaffold_312-1510915933:114654..115442Clytia hemisphaericaexon
TCONS_00058679-exon-scaffold_312-1575043694:114654..115442TCONS_00058679-exon-scaffold_312-1575043694:114654..115442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_312supercontigscaffold_312:114654..115442 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.122483	0.179144	1.31637	2.10197	0.0824892	0	0.235938	0.0736271	0.103091	0.0638475	0	0.12222	0.040683	0	0.173669	0.111827	0.045919	0	0	0	0.0591504	0.0865479	0	0	0.131355	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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