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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058686 ID=TCONS_00058686|Name=TCONS_00058686|organism=Clytia hemisphaerica|type=transcript|length=2614bp
AAAATGAAATCTGTCACTATGAAGTCACTTGACTGAACATAATGTGTGGA
TGACGtaagcaagaaaaaaaacaagggaataggaatttaattttgaattc
aaatttctcatcgGAGTATTTAAAAAACGACCTCTTCATAAAAATATACA
TAACTAAAATATCAACATAAAAAGTTTTCGTTTTTTCTATGTcccgaaaa
tgttttttaatacaTTTAATGCGTACAGACAAGGCTTCCACCACGCGTAC
GATTTGTGTTCAGATGAGGAGCAACATTGTGGCTCTCATACAGGTCATCA
TGACCCGGCAAATATCGTCCAGCAGTATCACAAATCTCTTGCTCTAAATA
AATCATTTTACGCTTTTCAACACGATGTAATCTAGGATATTGTGAAAGTG
AAGATTCAATAATTTCACGATCATCATAAGTTTGTACTTGATAGTCATCT
TCGTAGGGTGGCCGCCCGTATGAAGGGTGTGGATACTGGTGGTATTGTTC
ATTATAAGGATATTCGTTTTCCTCGCATCTCTCCCGTAACAACCCATTGG
TTTCAGTTCGATCTTCAGCGGTAATGGGGAGTTCCGGATACGTTGTTCTC
ATGTAATGATTACGGCTTTGCGGGTTCGCGTATAATTCAAGATAAGTTTC
TTCACTGTTTTTAGAATCTGGCCTGGGTACATAGTCATGatattgttttt
tattgaaatagcTATATCTTTCTGCATGACAGTTCTTTCGTCTTTGGTGA
CACAGGGAACAAGTGTTAGTACTTTGACTTTCACATGAACTTTGTGGAGC
ATGAGAAGCTGTGGTAGCGCTCTCGTGAGAACTGTTTATTGTTGTATGAC
CATGTGAAAATTGTCGTTCCAAATAtctttgagagtttgttgtcgATTGC
GAGTTATGACGAGACGGTCGGTTGGGTGGAGATTCTGAACGGTTGCTATG
GTGATTCGAGTCTCGGTGTTGTGAAGAATAACCCGATTGTCTATTGGAAG
AATTTTCATAAGGAGGAATATCATACGACATGATATATCTCGGAAGATCG
GAATTCTGCGAGCTTCCACATTGATTGGTCTCGTGTTGTTTATGAACCTT
CGCAACAGGCATATAAGTCTCGTTTTGCAATTCGAATTTCGCTAAATTAT
TCTCCGTTAAAGTTGGAGTAGTTTCtttgtcttttgatttctttttggaG
GATGGTGGACAATTTTGTTCGTTGGAATGCTTGCTGATTCGTTTGAAGAT
ACAAAATATAAGGAAAGTCAGGGGAATAATACCACAAACGACAACCATGG
GTAAAACAAAAGTATAAAGTCGGTCATCTTCATCACTCGTACCGTCCGAG
CTGTAAATAGCGATCCCAATTTCTTTTCGGTTTTTCTCGGTCACTACCTG
TAGTGCTTTATAAAAGTCACGTTTGCTTTTGATTTGCCAACTTAGTGAAA
TACCACGGTAATGTTTATGGGGGTCACGTTGCACGTAACCTAGAGTCACG
TTGATCGTGATATGCGACGTGTTCGAATATATTCTCCCGAAGCCGTTATT
GCCGCATTTCAAATGCGACGTTTGTAGTACGTTGTTCGATTTCTTTTTAC
TGTTATTTTTACGACgtctttttaaaaattccggatgAACAGAAATTAAT
TTTACGGAATCCATACACTTCTTATTTCGTTTCTTAGGGAGATCGAATTC
CTCAAAGTcaatttgaacatgatatcctTGCACCGTGTTAATATGGTAAA
CACAATTGAATTCGTCCGGATAATCTTGATAACGCGGGTATCCCGGACTG
CTAATAATACCGGAAGATTTGGAGCCGGTGCGCGAAGCGTTGATAATTTT
CTGACGTTGCGGACAATCTTTTTCGTCTGACCCATCCTCGCAATCGACAT
CGCAATCACATCTCTTACGTTTATCGATACACTTTCCACCTTTTTTGCAA
CAAAACGTGGTGGCGTTATCGTTCTCCTTGACTTCAAATACAGACACACA
TTTCCCTAACTGTTCAATTTTCGGGAACCATCGTCCATCGTGTCCACACG
TGACAAACATAACATTATAAGCGTACTGGCTGACTAATTCGTAACCCATA
TTACATGCGAAATAAACTTTATCGTATTCTTGATATCTTTCGGTACCGTA
TCCTCCATTACGTGGTGTGTTCGGAAACGTGATATAAGCGTTTTCCGGCG
GCGTAGGTCTTTGTGAGCATGTGCGTAGCGTAGAAGACTCTTGACATGTG
ACTTGTGATAATAACAGTAAAGTTACAAGACAACAGTATAAGCTTTCAGA
GTTAATATTGATCATGTTGCAAActcctttttttatttgttttaggTATT
AGAGATGATATATATGTGTAGACTGCTCATAAATCTTCTTGCCATTTAAA
GTCGTATATCAACAGAAAATCATAGATGTAATCATTAAATTGTCATTCAT
CAGTCCCTTGTCTGTTTTACTTTCTATCGTGTCTTTTAGATGAatatttt
cttagtttttgctctgaaacaaaaaaataagatgaaaTTACAACATAGCT
ATAAAAACATACTTAAAATTTACTGGCCACCCCTGAGGACCCAAAGAAAG
AAACAGTAATTGGC Run BLAST on NCBI transcript from alignment at scaffold_313:5133..7804+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058686 ID=TCONS_00058686|Name=TCONS_00058686|organism=Clytia hemisphaerica|type=transcript|length=2672bp|location=Sequence derived from alignment at scaffold_313:5133..7804+ (Clytia hemisphaerica)
AAAATGAAATCTGTCACTATGAAGTCACTTGACTGAACATAATGTGTGGA
TGACGtaagcaagaaaaaaaacaagggaataggaatttaattttgaattc
aaatttctcatcgGAGTATTTAAAAAACGACCTCTTCATAAAAATATACA
TAACTAAAATATCAACATAAAAAGTTTTCGTTTTTTCTATGTcccgaaaa
tgttttttaatacaTTTAATGCGTACAGACAAGGCTTCCACCACGCGTAC
GATTTGTGTTCAGATGAGGAGCAACATTGTGGCTCTCATACAGGTCATCA
TGACCCGGCAAATATCGTCCAGCAGTATCACAAATCTCTTGCTCTAAATA
AATCATTTTACGCTTTTCAACACGATGTAATCTAGGATATTGTGAAAGTG
AAGATTCAATAATTTCACGATCATCATAAGTTTGTACTTGATAGTCATCT
TCGTAGGGTGGCCGCCCGTATGAAGGGTGTGGATACTGGTGGTATTGTTC
ATTATAAGGATATTCGTTTTCCTCGCATCTCTCCCGTAACAACCCATTGG
TTTCAGTTCGATCTTCAGCGGTAATGGGGAGTTCCGGATACGTTGTTCTC
ATGTAATGATTACGGCTTTGCGGGTTCGCGTATAATTCAAGATAAGTTTC
TTCACTGTTTTTAGAATCTGGCCTGGGTACATAGTCATGatattgttttt
tattgaaatagcTATATCTTTCTGCATGACAGTTCTTTCGTCTTTGGTGA
CACAGGGAACAAGTGTTAGTACTTTGACTTTCACATGAACTTTGTGGAGC
ATGAGAAGCTGTGGTAGCGCTCTCGTGAGAACTGTTTATTGTTGTATGAC
CATGTGAAAATTGTCGTTCCAAATAtctttgagagtttgttgtcgATTGC
GAGTTATGACGAGACGGTCGGTTGGGTGGAGATTCTGAACGGTTGCTATG
GTGATTCGAGTCTCGGTGTTGTGAAGAATAACCCGATTGTCTATTGGAAG
AATTTTCATAAGGAGGAATATCATACGACATGATATATCTCGGAAGATCG
GAATTCTGCGAGCTTCCACATTGATTGGTCTCGTGTTGTTTATGAACCTT
CGCAACAGGCATATAAGTCTCGTTTTGCAATTCGAATTTCGCTAAATTAT
TCTCCGTTAAAGTTGGAGTAGTTTCtttgtcttttgatttctttttggaG
GATGGTGGACAATTTTGTTCGTTGGAATGCTTGCTGATTCGTTTGAAGAT
ACAAAATATAAGGAAAGTCAGGGGAATAATACCACAAACGACAACCATGG
GTAAAACAAAAGTATAAAGTCGGTCATCTTCATCACTCGTACCGTCCGAG
CTGTAAATAGCGATCCCAATTTCTTTTCGGTTTTTCTCGGTCACTACCTG
TAGTGCTTTATAAAAGTCACGTTTGCTTTTGATTTGCCAACTTAGTGAAA
TACCACGGTAATGTTTATGGGGGTCACGTTGCACGTAACCTAGAGTCACG
TTGATCGTGATATGCGACGTGTTCGAATATATTCTCCCGAAGCCGTTATT
GCCGCATTTCAAATGCGACGTTTGTAGTACGTTGTTCGATTTCTTTTTAC
TGTTATTTTTACGACgtctttttaaaaattccggatgAACAGAAATTAAT
TTTACGGAATCCATACACTTCTTATTTCGTTTCTTAGGGAGATCGAATTC
CTCAAAGTcaatttgaacatgatatcctTGCACCGTGTTAATATGGTAAA
CACAATTGAATTCGTCCGGATAATCTTGATAACGCGGGTATCCCGGACTG
CTAATAATACCGGAAGATTTGGAGCCGGTGCGCGAAGCGTTGATAATTTT
CTGACGTTGCGGACAATCTTTTTCGTCTGACCCATCCTCGCAATCGACAT
CGCAATCACATCTCTTACGTTTATCGATACACTTTCCACCTTTTTTGCAA
CAAAACGTGGTGGCGTTATCGTTCTCCTTGACTTCAAATACAGACACACA
TTTCCCTAACTGTTCAATTTTCGGGAACCATCGTCCATCGTGTCCACACG
TGACAAACATAACATTATAAGCGTACTGGCTGACTAATTCGTAACCCATA
TTACATGCGAAATAAACTTTATCGTATTCTTGATATCTTTCGGTACCGTA
TCCTCCATTACGTGGTGTGTTCGGAAACGTGATATAAGCGTTTTCCGGCG
GCGTAGGTCTTTGTGAGCATGTGCGTAGCGTAGAAGACTCTTGACATGTG
ACTTGTGATAATATCAGTAAAGTTACAAGACAANAGCGTAGAAGACTCTT
GACATGTGACTTGTGATAATAACAGTAAAGTTACAAGACAACAGTATAAG
CTTTCAGAGTTAATATTGATCATGTTGCAAActcctttttttatttgttt
taggTATTAGAGATGATATATATGTGTAGACTGCTCATAAATCTTCTTGC
CATTTAAAGTCGTATATCAACAGAAAATCATAGATGTAATCATTAAATTG
TCATTCATCAGTCCCTTGTCTGTTTTACTTTCTATCGTGTCTTTTAGATG
AatattttcttagtttttgctctgaaacaaaaaaataagatgaaaTTACA
ACATAGCTATAAAAACATACTTAAAATTTACTGGCCACCCCTGAGGACCC
AAAGAAAGAAACAGTAATTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058686-exon-scaffold_313-1491911889:5133..7377 | TCONS_00058686-exon-scaffold_313-1491911889:5133..7377 | Clytia hemisphaerica | exon |
| TCONS_00058686-exon-scaffold_313-1510915933:5133..7377 | TCONS_00058686-exon-scaffold_313-1510915933:5133..7377 | Clytia hemisphaerica | exon |
| TCONS_00058686-exon-scaffold_313-1575043694:5133..7377 | TCONS_00058686-exon-scaffold_313-1575043694:5133..7377 | Clytia hemisphaerica | exon |
| TCONS_00058686-exon-scaffold_313-1491911889:7436..7804 | TCONS_00058686-exon-scaffold_313-1491911889:7436..7804 | Clytia hemisphaerica | exon |
| TCONS_00058686-exon-scaffold_313-1510915933:7436..7804 | TCONS_00058686-exon-scaffold_313-1510915933:7436..7804 | Clytia hemisphaerica | exon |
| TCONS_00058686-exon-scaffold_313-1575043694:7436..7804 | TCONS_00058686-exon-scaffold_313-1575043694:7436..7804 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:5133..7804 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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