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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058694 ID=TCONS_00058694|Name=TCONS_00058694|organism=Clytia hemisphaerica|type=transcript|length=274bp
tttagggGCATTTGTTATGAAGAAAAATGGCGGAAAGTGTGGAGTTTGCG
GTGACCCATATCATGCTAAAGTTCAACCACATGCAGATGGTGGGAAATAT
GCCAACGGTATCATCACCAGAACATACAAACAAGGACAAGTCATCGATGT
TAAGATTTATTTAACTATGTCGCATCTTGGTTATTTTGAATTCCGTATCG
GGGAATTCGACAATAAAAAGACCTCGGGAAATGCGATCGGAAAATTAAAT
GGTCACCTCATGGATTTGGTGAGT Run BLAST on NCBI transcript from alignment at scaffold_313:131652..138045+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058694 ID=TCONS_00058694|Name=TCONS_00058694|organism=Clytia hemisphaerica|type=transcript|length=6394bp|location=Sequence derived from alignment at scaffold_313:131652..138045+ (Clytia hemisphaerica)
tttagggGCATTTGTTATGAAGAAAAATGGCGGAAAGTGTGGAGTTTGCG
GTGACCCATATCATGCTAAAGTTCAACCACATGCGTAAGTCAATAACAAG
TTTTTTGTCACATTGTAATTCCTACTTCGATTGTTTTTAATCTACTAATA
CTATTAAAAGGGTATTTCCTCCTCATTTTCATACCCATTGCCCACGTATG
ATTCTCTTCTTCTCTTTTATACGATATTTGGTCTTCTATCTAGCTTGTTT
TCGTTTCATGTACGCTATGTTTCACTTAAATCCTCCCACAGATATTATTC
TCGAATCCTGTTTACGTAGATTTCATTCTAACAAAGTAAACCTTTTAACT
TACCGAATCTACCCAGCGGCAGTTTTTGACATGGTTTTTGacacgcaagt
ttctgcgtagctagccggggattctataaggccggaacaccggattcttc
cagtcatttatacaaactaaatcccgtagcAATAAACGTATTATCTtata
actaggtcacagtgtggatgtaaaccacactgaaacgaccgccttccacc
acgcatcacgctcgcgaaagagcgcgcgcacgttatcaacgcctacatgt
catctccagtacattttagattattcattgaaaacagattagaatatagt
catttttcatgtctcgattattcaattccgaataaaagacattcggggaa
aaaaaagagaaacacctgggtaatctagttaaaaaccgaaagtaaatagt
agacaaagtaatgagccaaggcaaaacgagattagcgtaccactatgaaa
gaaaccgcctccggcggtcgataataataataataatgctatacaagttc
gcaggccaccatgcgagcacatgggcctctatgaaccgctctttgttcgg
tttacaattttcttaaggtagagttttttcctagggctcccgcaaatttt
ttttccgtgaacGGACGGAAGTATCTTCGACGGTCAGAAGTATCATCTTT
TGACGGTCGgaagtatcatttttaatttttcctatccgtTATTCCGTGGT
TTAGGGGGTATTGGGTCATTACCAATCaattaggtagggtcagggttgct
agtaacggcttgtcactgtgccgggtgcatactggGCGCCTTGGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNgagttgctagtaacggctcgaatt
tcagtcagtttaaaaaaggggtacttttacccatattataataacattac
ccccgtcttttgccagttcggtatgatttgttatgaattgcgtgtatttg
ctgtgcggcgatggctcaacggatagagcgctggctttcgaagctgaagg
tctttctttggtggtggttcgaatcccactcggtgcgaaaattagacagg
tcgaaattgatggacaaatgattgacaggtatgaaaactcagtcagaaat
gagaaactaagtctcagaaagtagaaaaacagataaggtgaaagatagga
aagggaaaTTGGGCCGTCAAAAGATGATACTTCTGACCGTCGAAGATACT
TCTGACCGTCGAAGATACTTCCGTCCgttcacggaaaaaaaatttgcagg
gctccccctgactttgaatttgaagtttGCGTCCTTTATTGAAGTATTCA
TTTCTTGGGCTTTGATACACCACTCTTTGGTTgtcttcctttcacttttc
gCAAGATCTTCTGTCACGCGGAAGGGTAATCTTAAGGGTAATCCTCCTTT
GGTGATTGCCTTTaacactgtatttttgtcttcttcgtttgCAAATCGGA
CTTTTATTGGTCGATAGTGTTTCTCATCTTCTCtttccttcgaaaatttt
ccgattctttgagtttcttcGATTTTTATATTCCTTAAGCGTAGCATCAT
AGGTAAAGACTTTTTCATGAATATATTCTTTGTCGTAGATTTTGGTTGAC
TCCTCTGAATCTTCAGTGGATTCGTTAACACCGAGTTAATCGAGTTAATC
CgagttttaagttttgaaattttgaaatttggcttAATCAATAATTTCAA
CGCTCTTTGTTGAAAATGAATTAACTTTTTGCCAAGTTTACGTAACGATT
TACAATAATTTATTTCAAAGTTCCGAGTTATAACTCGGATTGCGTTTTGA
AATTTGGGTTTAATTATTAAATTTTTGAGCGAAAAATAACATTTCAGCCA
ATTCTAAAGTGCTCAGAAAGCCAAACAAACAAATCAATCTTTGGAAAACA
TCTTAAGTACAATCCTTTGNAGAAAgccaaacaaacaaataaatctTTGG
AAAACATCTTAAGTACAATCCTTTGTTCAGAACAACTCAGAAACACACGG
AAACTAGGGGGTGTTCTTGTACCaccccataacttttgatctaattgatg
gtctttttggatgaaatttggcattcATATAAgataacttttgacaaaaa
aatcttttttgatgaagtcactcatcatgcccaaagtaagcaaaaaccga
aaatttcctttgttcttgtGAATAGCCATTGTATTATAACAAAGacttaa
gaaaaaaattccccgagtttaaaatgcttattttatcctaaatattcaat
aaattacggtttaaacgatatatttgacatgaaaataaatttgtattgaa
aaagtgtcattttttgtgtcaccttactgtcagaaataaGTGGACTTGCG
TTTTTCGTTTTTAACAGATTGCTCTATAAACTTTCAGTGTGAAGATTAAC
AAATTTTACACCATTTTCTTGCATGAAAAATTCTCATTGCAATGATATTA
ATTTGTTTCGATAAAACTTGGTTGAGCTTCGGGAAAGCAGATTAATTTCT
TACCTTCCTGTGAGCATGCTTCCTGCTTTAGAGGTTTTATCTAATGATGC
GGTCGTGATACGGTTATATCATTTGAattgctaggaaattctgagcaaga
aaatatagctttatTTTGGTCTGAACGAGGTGTTCTCAAAATATAAGCCT
CTAAAGTTCACGCATAATCAGACTCAACCTACCTACCTAGGTCGGGCGCC
AGCCCGGACCCCATGAATTCTTCTTTTACAGCCTTCTCTATCCATCATTG
CTGTTCAAATCTCGTTTTCATTCTCACACCCAGTGTCTCTTAACAATGTG
TCAATGAATGTCGTCTTGCGCTTTCCTCTTTTCGATCTACCTCGTGTTGG
GTTCCAAAGCACAAGTTTTGAGGCTTCTTCTTCATTATGGAGAACACAAT
GACCTGTGAGACGCATTCATCTTTCTCTTATTTTTGATGAGAGCTTGGGT
AATGTGCCATATAAAATGACATTTGAAACATGATCTCGCCTAGAAATGTT
TAATGCTGAGCGAAGTAATCTCGTGTAAGTTCCAGCGATCATTTTCTCTG
TGGATTTTGTAAGAGTCCACGTCTCACAACCGTTAAGAAGTACACTCTCT
ACTGTAGAACAAAATCAAGTAAAACAGGTCCagatttggaggttcttgga
tcactcgttgaccaaatttttttttttgtactttttggcttaaaatcttg
ctggaaagactcactttttttttgcttgaccatgaggcccaatccaattc
ctacgagttaaaccaaaaatgacgatttctaactcaaactgggcattaca
ggagggcttcgccctcctacatagcccatatCTGATATATACGGCAttgg
tacttaaagggttaagggcAAATGACCTGGTACATGACGAGACGTATTTC
CATCATTTTCAAGAAGCCTTTTCCCTCTTTATACTCTGAGTACATTGAGC
TAAAAACTACCACCGTGCTGCCTCACCGGCCTCACCctagtaccctgagt
atcagaggttgagttttcaacgAAAATATCAACCtttgaagaccaataat
agaaattttattgcgtatgtgtcaatctaatcactgtagaaggaatcaaa
gatgaagagcaaataacATAtaaatgtctagcagactgtatctatgatct
tggattaagttcaaagttgatattagttccatttatactgagatggaaaa
atcgtctgagacaagtagtttgtaaaatgtgatttgtggaggagatccta
tttattgaaacatgaatggaaacatttgggaatcatttaaaagatatctt
ttgaaataaacTCATCTCAATTACacttttttctgggaaattcgtcaaca
gtaaactgcatactgatacagtgaCACccgagtatcagaggttgagaata
tttcaacctctgaacaccaataatagaaattatatcgcgcatgtgtcaat
ctaatcactgtagaaaaaatcaaagatgacgagcaaatattaccatatta
atgtctagcagactgtatcagtatacagtttactatttacgaactcccca
gaaacctccaagtgtaattgaaattatAGCCCTGTaatacaactgtcaat
catttttgagaaaactgaTTGGATAATTGATGTCACGTGGCCGGTTAATA
TTTCCCCATAGTGACCAGTTGGAAATTGACATCTTTAGAATGTTAATTTT
TACGAtgtagaacaatagaatacacttgttaattacttttattactttat
tatANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNcccaaatgtataacagtaattactaaac
ttttaattattgaaatgtcactttaattgaatcgaaataatagacagact
ttatgttatgattctctataactgattctttttaaaaagcattgatgata
atTTTGAGTTGTATTTTCAACGATGGgaataagaaatatcaaatctgaac
ttcatccaagatcttggatggtcgccatggttacttttctctgcgttgat
tgcgcgctgaatagaatctggattggttgGCACAGCGTCGATGTACAATT
TCGACCTGTGGTTTTCACGGTATCACCCTAGTATTAAACGTTGAAAGTTA
GCATCTAAAATCTAGATTTTATTAAACCAACCTAATTCAACGGATTCATA
GTTCATTtgctaaatttcttttttatattcgtCCCCAAAGTCCATCCTGA
GATAATTGTCTCCTTTGGATTTTCCATCCCAAATACAACTTTGACAAACC
ACTAAAGGTCCACCAAAACATCGAAGCATGAGTTTTTGAATCATTTCAAA
TAATCCTTGGTCTAAGTAATTTTATTTAAGATGAATTTTTATCCGACGTT
TCAGAGATGGTGGGAAATATGCCAACGGTATCATCACCAGAACATACAAA
CAAGGACAAGTCATCGATGTTAAGATTTATTTAACTATGTCGCATCTTGG
TTATTTTGAATTCCGTATCGGGGAATTCGACAATAAAAAGACCTCGGGAA
ATGCGATCGGAAAATTAAATGGTCACCTCATGGATTTGGTGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058694-exon-scaffold_313-1491911889:131652..131735 | TCONS_00058694-exon-scaffold_313-1491911889:131652..131735 | Clytia hemisphaerica | exon |
| TCONS_00058694-exon-scaffold_313-1510915933:131652..131735 | TCONS_00058694-exon-scaffold_313-1510915933:131652..131735 | Clytia hemisphaerica | exon |
| TCONS_00058694-exon-scaffold_313-1575043694:131652..131735 | TCONS_00058694-exon-scaffold_313-1575043694:131652..131735 | Clytia hemisphaerica | exon |
| TCONS_00058694-exon-scaffold_313-1491911889:137856..138045 | TCONS_00058694-exon-scaffold_313-1491911889:137856..138045 | Clytia hemisphaerica | exon |
| TCONS_00058694-exon-scaffold_313-1510915933:137856..138045 | TCONS_00058694-exon-scaffold_313-1510915933:137856..138045 | Clytia hemisphaerica | exon |
| TCONS_00058694-exon-scaffold_313-1575043694:137856..138045 | TCONS_00058694-exon-scaffold_313-1575043694:137856..138045 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:131652..138045 + |
Blast
The following BLAST results are available for this feature:
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