TCONS_00058707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058707
Unique NameTCONS_00058707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058707 ID=TCONS_00058707|Name=TCONS_00058707|organism=Clytia hemisphaerica|type=transcript|length=699bp
TTTTAATTGCTCCAAATCGTCACTGATGTAAGGAAAGTTAAGTCATAACA
AACGTTCGTTACATTAAGATTGAATCAAAAAGAGTAAAAGAGCTGAAACA
AATTCGTGTTTTCTTTTACACGGAGTTCTACAACATTGTGTTTTCGATTT
TTCTTCAACCAACACGCACATCACATCCGCACCAGCAAGCCGACCACAAC
CAACCACAACCCAACAATGAAGATGACTTCAAAGCAGATTCNATCCGCAC
CAGCAAGCAGACCACAACCAACCACAACCCAACAATGAAGATGACTTCAA
AGCAGATTCCTCTGACTTGTCCTGGACACACCAGGCCAGTTGTAGACTTG
GCATTTTCAGATTCAGAAAATGATGAGGCATATTTTCTCATCAGTGGATG
TAAAGaTGGAAAACCAATGCTTAGACATGGTGAAACAGGGGATTGGATTG
GAACATTTGAAGGACACAAGGGTGCTGTATGGGGTGCTACTTTGAACAAA
GATGCCACACTTGCTGCTACAGCTGCTGCTGATTTCTCAGTgAAATTATG
GGATGCTGTTGCAGGCAAAGAAAGTGCTTCATTTACACATAAGCATATTG
CTAAAACTGTTGATTTCTCTCAGgaTGGGAATCTTTTGTTAACTGGTAgt
aatgaaaagaaaatgagaatttttgatATACAAAACACTGATAAAGGTT
Run BLAST on NCBI

protein sequence of TCONS_00058707-protein

>TCONS_00058707-protein ID=TCONS_00058707-protein|Name=TCONS_00058707-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MKMTSKQIPLTCPGHTRPVVDLAFSDSENDEAYFLISGCKDGKPMLRHGE
TGDWIGTFEGHKGAVWGATLNKDATLAATAAADFSVKLWDAVAGKESASF
THKHIAKTVDFSQDGNLLLTGSNEKKMRIFDIQNTDKG
Run BLAST on NCBI

transcript from alignment at scaffold_313:378157..381849+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058707 ID=TCONS_00058707|Name=TCONS_00058707|organism=Clytia hemisphaerica|type=transcript|length=3693bp|location=Sequence derived from alignment at scaffold_313:378157..381849+ (Clytia hemisphaerica)
TTTTAATTGCTCCAAATCGTCACTGATGTAAGGAAAGTTAAGTCATAACA
AACGTTCGTTACATTAAGATTGAATCAAAAAGAGTAAGTCTTGTCCTGAG
GAAAGAAGCCATCTTCGCTGTTCGTGGTGATTTCTTGTGTTTGTGAGTGT
CTTTCGTTTTCTTTCGAAAACTGGAATCGAATGTTTATATGAAATTCCGA
GAAGAGCAGCCCAACTTACACTCTTCCGCGGATGATTAATTATAAAGAAT
TATATAGACCCAATATTCATAGAAATGGTGGTTTGGTGGTTTGAAATAAA
ACTTCAACCAAAGTTGTACAATAGCAGTTTTTCTGTGATTCAANATGGTG
GTTTGACATAAAACTTCAACAAAAGTGGTACAATAACAGTTTTTCTGTGA
TTCAAATAATTAATTGAAAGTTCAATTTTCTTCCAGGACtgttattttct
ttattatttttctacACTAAGGAGAAGAGCTGAAACAAATTCGTGTTTTC
TTTTACACGGAGTTCTACAACATTGTGTTTTCGATTTTTCTTCAACCAAC
ACGCACATCACATCCGCACCAGCAAGCCGACCACAACCAACCACAACCCA
ACAATGAAGATGACTTCAAAGCAGATTCNATCCGCACCAGCAAGCAGACC
ACAACCAACCACAACCCAACAATGAAGATGACTTCAAAGCAGATTCCTCT
GACTTGTCCTGGACACACCAGGCCAGTTGTAGACTTGGCATTTTCAGATT
CAGAAAATGATGAGGCATATTTTCTCATCAGTGGATGTAAAGGTAAAATG
GTTTGAGCTCTATAAAAATGGTTTGCTTTTTTGTTGTGGGCGGGGGTGGT
cctctttttctttgttgttcTTGTCTCCTGTTCTTTTACTGTAGCAGGCA
TATTTCCAGGTGTTTTCTGCTACCGGATAACGGTAGCATTTCACacagcc
cttctttttggcacccgcgCGGGGCCTCTCACTGCCTTGCACGACGGGTg
gggctgtaaaatcccacccttaatatatttgtttcaatccgttaggtctg
gcttaggttttttctcatcttcaatttactgaagaaagagGGAATTTGAC
GCAAGAGTTAGATtatcaacaaagtgccgtaaaaaatcattgaataaaaa
agaagaactttaaagaAGAATTagtgcaaaaaagtgaagcatggaaaagc
ttcattttttattgtttcaatcgaaataggggatttggaaaacttcctat
gtttggttttttgcacaaacccctgtatctatgggcgagcacctggttgc
taagatgttggcttgaaatcgaaagtgaaaccactaaaaatgaaagtaaa
attggcCTGCACTCCAAACGTCGTAAccttgatataggagttttgGTCTA
TACTGCAAATAAAAGATTAAAGAGAAGAGCCATAATCGGCCAAAATTGGT
TGTTCGTCAATCGTGGAGATTTTCAATCTTCAAAATTAAGTCAGTGAGTT
TCTTTAGCTTTCCTACCGTTAGTTGCTTGGTCTAATATCAACTTCTTTCT
TCTAATTTAAACACCCTACTTTGGAGATGGGAATAATAGGAATGTCCGAA
TCACTAGgattgaaactgattttctttgcttagcaatcagagaaaaaaaa
aagtaatctctatcagtgattctgaccttcataatattcctatctataaa
aaagggtgtcagaattagaagagggatgttgacattagaccaatcACATG
GTATAGGTCTTTTATGCTTTTGAAGAtcccccaaaaatcataaattttcg
gggcttacaattttgtctaaaaacgcaaaaactgCCGGCTTTCAAGCTTG
GTAAAAttcaaattcggaatcagcCCCCTCGAATTGAGtaagaaacatat
caaaaagttggtcacagacattttgaattttttctttatttttgaaactt
tagcaaTCCGCTGACCATGGTCTTAATGATCTTCAAAAAACCGTAGCAAA
GACAAATGAAACGGTTTTTTTCAAGATGTTTTCATggtcagaaaaattga
attttaaggtGCTGTTTTTGGTTACGGTATGTGAAAAAAAGGCATCTTTC
TTTCCCAaaaattcaattaaattgaaattaccTAAAGTTGAAACAAAACC
TGGCAAACATTCCAAAGCTATAAAAAAGTTCCATTTTCAgaactaaaaaa
agttttgttttcggAGTAGAAACTAGAACTAGACTTCAAAATGTATATGC
AACAGCAAGTATGAGAGTTACCTGACCAAGTTCAAGATGAAAAATAATAG
TATTAATAATAATTATTAACTTAATAGTATATGAataagattttgaattt
taaatttcagaTGGAAAACCAATGCTTAGACATGGTGAAACAGGGGATTG
GATTGGAACATTTGAAGGACACAAGGGTGCTGTATGGGGTGCTACTTTGA
ACAAAGATGCCACACTTGCTGCTACAGCTGCTGCTGATTTCTCAGTGTAA
ATCTTATTATATTAGTAACTTATTAAAACCCCTTTTTCCTCTTTAAAACA
CTCTTCTTAGAATAATTACACACATCTTGGTTGAAAAGGATTATAAATAA
GGAATACAATTAATCCTTTAAATCATAATCTCCAATGGTTCATCATAAAC
AGTTTCTAGAAAATAAGCCAATACAATGTTGATGTAggcttatttttaaa
aagtttataaaaaagACATTCCTACACAAACATCAAAGTTTCGAGCACCT
TTAGGTGTCTAGTTGATCATAGGTGATGATAACCACCGGAATCACACATT
AAGTAATTCCTTCAATCAACAATGAATCATTTGTATCTTCTTCCTATGGA
CTTGGGAAATTACAATTTTCTAATTGTTACTCCTGATATGTTGTTATTTG
TACTTCGAAATGAATGTGTGATTAATCTAATGACTAAAATTATACGTCAT
GCTAAATTActcaaatctgattggttttgttgttgtttcttGGGTATGTa
tttaatagtttatttcatgttgatgaaaaggtagcaacaaaggctaataa
aagccAATGCTACTTTACAATTAATTCAAAGGTAATTCAAAGGGTAATTC
AAAGATTATTTGCAAAACATAAAAggataaataaaaaatcagaaGGCTTC
GAGGTCTAAAGTTCTTAAGAAATTTTAGCGTATGAAGGAACTGTCCCGTG
AGGCTACAATCACATTACAACTTGTCCTTTGGAGatgtgaaaatttctat
tttctcctttgataTTCTCATTATTACATCAGAACCATATGATTTCTCCT
ACAAAATTACCGTTTGAAAATAGAGTTCAATAATAATTTCTTATAAGttt
tcttgtttaatttttaccttattttaggAAATTATGGGATGCTGTTGCAG
GCAAAGAAAGTGCTTCATTTACACATAAGCATATTGCTAAAACTGTTGAT
TTCTCTCAGGTAAGATTATAGATCTCTCAATCTAATGTATTACACCATTA
CCTATTCGTGCATGATAACTTTTgttgatttctttcaatttcgTGTTTAC
ATTCATTCCAATCAAATATTgtatttgtttgaaaatatctttaatgtaga
tctttttctttttccaggaTGGGAATCTTTTGTTAACTGGTAgtaatgaa
aagaaaatgagaatttttgatATACAAAACACTGATAAAGGTT

Coding sequence (CDS) from alignment at scaffold_313:378157..381849+

>TCONS_00058707 ID=TCONS_00058707|Name=TCONS_00058707|organism=Clytia hemisphaerica|type=CDS|length=1656bp|location=Sequence derived from alignment at scaffold_313:378157..381849+ (Clytia hemisphaerica)
ATGAAGATGACTTCAAAGCAGATTCCTCTGACTTGTCCTGGACACACCAG
GCCAGTTGTAGACTTGGCATTTTCAGATTCAGAAAATGATGAGGCATATT
TTCTCATCAGTGGATGTAAAGaTGGAAAACCAATGCTTAGACATGGTGAA
ACAGGGGATTGGATTGGAACATTTGAAGGACACAAGGGTGCTGTATGGGG
TGCTACTTTGAACAAAGATGCCACACTTGCTGCTACAGCTGCTGCTGATT
TCTCAGTgAAATTATGGGATGCTGTTGCAGGCAAAGAAAGTGCTTCATTT
ACACATAAGCATATTGCTAAAACTGTTGATTTCTCTCAGgaTGGGAATCT
TTTGTTAACTGGTAgtaatgaaaagaaaatgagaatttttgatATACAAA
ACACTGATAAAGGTATGAAGATGACTTCAAAGCAGATTCCTCTGACTTGT
CCTGGACACACCAGGCCAGTTGTAGACTTGGCATTTTCAGATTCAGAAAA
TGATGAGGCATATTTTCTCATCAGTGGATGTAAAGaTGGAAAACCAATGC
TTAGACATGGTGAAACAGGGGATTGGATTGGAACATTTGAAGGACACAAG
GGTGCTGTATGGGGTGCTACTTTGAACAAAGATGCCACACTTGCTGCTAC
AGCTGCTGCTGATTTCTCAGTgAAATTATGGGATGCTGTTGCAGGCAAAG
AAAGTGCTTCATTTACACATAAGCATATTGCTAAAACTGTTGATTTCTCT
CAGgaTGGGAATCTTTTGTTAACTGGTAgtaatgaaaagaaaatgagaat
ttttgatATACAAAACACTGATAAAGGTATGAAGATGACTTCAAAGCAGA
TTCCTCTGACTTGTCCTGGACACACCAGGCCAGTTGTAGACTTGGCATTT
TCAGATTCAGAAAATGATGAGGCATATTTTCTCATCAGTGGATGTAAAGa
TGGAAAACCAATGCTTAGACATGGTGAAACAGGGGATTGGATTGGAACAT
TTGAAGGACACAAGGGTGCTGTATGGGGTGCTACTTTGAACAAAGATGCC
ACACTTGCTGCTACAGCTGCTGCTGATTTCTCAGTgAAATTATGGGATGC
TGTTGCAGGCAAAGAAAGTGCTTCATTTACACATAAGCATATTGCTAAAA
CTGTTGATTTCTCTCAGgaTGGGAATCTTTTGTTAACTGGTAgtaatgaa
aagaaaatgagaatttttgatATACAAAACACTGATAAAGGTATGAAGAT
GACTTCAAAGCAGATTCCTCTGACTTGTCCTGGACACACCAGGCCAGTTG
TAGACTTGGCATTTTCAGATTCAGAAAATGATGAGGCATATTTTCTCATC
AGTGGATGTAAAGaTGGAAAACCAATGCTTAGACATGGTGAAACAGGGGA
TTGGATTGGAACATTTGAAGGACACAAGGGTGCTGTATGGGGTGCTACTT
TGAACAAAGATGCCACACTTGCTGCTACAGCTGCTGCTGATTTCTCAGTg
AAATTATGGGATGCTGTTGCAGGCAAAGAAAGTGCTTCATTTACACATAA
GCATATTGCTAAAACTGTTGATTTCTCTCAGgaTGGGAATCTTTTGTTAA
CTGGTAgtaatgaaaagaaaatgagaatttttgatATACAAAACACTGAT
AAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036986XLOC_036986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058707-exon-scaffold_313-1491911889:378157..378243TCONS_00058707-exon-scaffold_313-1491911889:378157..378243Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1510915933:378157..378243TCONS_00058707-exon-scaffold_313-1510915933:378157..378243Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1575043694:378157..378243TCONS_00058707-exon-scaffold_313-1575043694:378157..378243Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1491911889:378631..378948TCONS_00058707-exon-scaffold_313-1491911889:378631..378948Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1510915933:378631..378948TCONS_00058707-exon-scaffold_313-1510915933:378631..378948Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1575043694:378631..378948TCONS_00058707-exon-scaffold_313-1575043694:378631..378948Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1491911889:380517..380652TCONS_00058707-exon-scaffold_313-1491911889:380517..380652Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1510915933:380517..380652TCONS_00058707-exon-scaffold_313-1510915933:380517..380652Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1575043694:380517..380652TCONS_00058707-exon-scaffold_313-1575043694:380517..380652Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1491911889:381534..381615TCONS_00058707-exon-scaffold_313-1491911889:381534..381615Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1510915933:381534..381615TCONS_00058707-exon-scaffold_313-1510915933:381534..381615Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1575043694:381534..381615TCONS_00058707-exon-scaffold_313-1575043694:381534..381615Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1491911889:381774..381849TCONS_00058707-exon-scaffold_313-1491911889:381774..381849Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1510915933:381774..381849TCONS_00058707-exon-scaffold_313-1510915933:381774..381849Clytia hemisphaericaexon
TCONS_00058707-exon-scaffold_313-1575043694:381774..381849TCONS_00058707-exon-scaffold_313-1575043694:381774..381849Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058707-proteinTCONS_00058707-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:378157..381849 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
88.6944	97.2229	27.7909	21.4144	107.111	78.8541	98.0198	92.4621	129.897	113.74	110.545	147.41	63.3216	68.4105	59.1618	73.6374	56.038	58.4399	36.0973	43.9748	46.9026	47.3256	76.8733	72.757	82.9448	72.0143	62.2483	52.2353	51.1908	56.9041
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00058707 vs. Swiss-Prot (Human)
Match: STRAP (Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.874e-45
Identity = 92/130 (70.77%), Postives = 103/130 (79.23%), Query Frame = 3 
Query:  291 MTSKQIPLTCPGHTRPVVDLAFSDSENDEAYFLISGCKDGKPMLRHGETGDWIGTFEGHKGAVWGXXXXXXXXXXXXXXXXFSVKLWDAVAGKESASFTHKHIAKTVDFSQDGNLLLTGSNEKKMRIFDI 680
            M  +Q PLTC GHTRPVVDLAFS       YFLIS CKDGKPMLR G+TGDWIGTF GHKGAVWGATLNKDAT AATAAADF+ K+WDAV+G E  +  HKHI KTVDF+QD N LLTG  +K +RI+D+
Sbjct:    1 MAMRQTPLTCSGHTRPVVDLAFS-GITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDL 129
The following BLAST results are available for this feature:
BLAST of TCONS_00058707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STRAP4.874e-4570.77Serine-threonine kinase receptor-associated protei... [more]
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