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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058747 ID=TCONS_00058747|Name=TCONS_00058747|organism=Clytia hemisphaerica|type=transcript|length=3584bpRun BLAST on NCBI protein sequence of TCONS_00058747-protein >TCONS_00058747-protein ID=TCONS_00058747-protein|Name=TCONS_00058747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=853bp MFLQLLGAFIFGIVAVLVVELIVLYKWFQRQPNEDLKELPSYTPVTNPKDRun BLAST on NCBI transcript from alignment at scaffold_313:266695..284533- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058747 ID=TCONS_00058747|Name=TCONS_00058747|organism=Clytia hemisphaerica|type=transcript|length=17839bp|location=Sequence derived from alignment at scaffold_313:266695..284533- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_313:266695..284533- >TCONS_00058747 ID=TCONS_00058747|Name=TCONS_00058747|organism=Clytia hemisphaerica|type=CDS|length=28182bp|location=Sequence derived from alignment at scaffold_313:266695..284533- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058747 vs. Swiss-Prot (Human)
Match: PDZD8 (PDZ domain-containing protein 8 OS=Homo sapiens GN=PDZD8 PE=1 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 8.360e-73 Identity = 133/365 (36.44%), Postives = 225/365 (61.64%), Query Frame = 3
Query: 270 KESCMFLNLIFQFLWREWRDSPKTRNFFIRKMNMEFQEMLLNKAAGKIMEQITVRDYYLGDSLPEFKSATIMKI-------------DNKNHSQVPQEIDLAVDIDYSGGFVISLDVDLIFGRTASLSIKLNKLVGRVRLQYTRNPCTHWSFSFYEDPIMDLHVDSNFEGKKLPKLTSFIHNQIRKSIKKKHTLPRYKVRYKPFFVKEEPQ---DGRNEVFIHNSLVTMGKLDLEIVECTRI---QKLPKGSHIYCSLSLDILPWKEDMPMKRSMWPVHEVLMSKMKSGSLGVSFGAVKDRNTESDNIELITINTIFPNSPATQVDIQKGDILISVNDVDITNMKQVKRLIKNTGDQFTFKLQRP 1307
+E+C FLN FL+RE RD+ TR + +K+ +EF+E+L K AG+++E +++RD +LG+++P K+ +++ + P+E+ +++Y+GGF +++DVDL+FG++A L +KL+++VGR+RL +TR P THW FSF EDP++D V S FEG+ +P+LTS I NQ++K IK+KHTLP YK+R+KPFF + Q + + I +T G+L + ++EC+R+ + ++++C+L L W+E +RS E++ ++ S+G++ V+ + + + + I T+ PNSPA D+Q+GD LI++ V IT+ QV +LIK GD+ +RP
Sbjct: 92 RETCYFLNATILFLFRELRDTALTRRWVTKKIKVEFEELLQTKTAGRLLEGLSLRDVFLGETVPFIKTIRLVRPVVPSATGEPDGPEGEALPAACPEELAFEAEVEYNGGFHLAIDVDLVFGKSAYLFVKLSRVVGRLRLVFTRVPFTHWFFSFVEDPLIDFEVRSQFEGRPMPQLTSIIVNQLKKIIKRKHTLPNYKIRFKPFFPYQTLQGFEEDEEHIHIQQWALTEGRLKVTLLECSRLLIFGSYDREANVHCTLELSSSVWEEK---QRSSIKTVELIKGNLQ--SVGLTLRLVQSTDGYAGH---VIIETVAPNSPAAIADLQRGDRLIAIGGVKITSTLQVLKLIKQAGDRVLVYYERP 448 The following BLAST results are available for this feature:
BLAST of TCONS_00058747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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