TCONS_00058753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058753
Unique NameTCONS_00058753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058753 ID=TCONS_00058753|Name=TCONS_00058753|organism=Clytia hemisphaerica|type=transcript|length=494bp
tgaaaagattGTCCTCCCATACAACCCATACATGAAGTCTTACTCATCAA
GCAACATTGATTTGTTCGAACAGTTATGCACAAACTGGGACCAAGTCAAC
ACACAAGATTTTGTCCTCCCGACTGGCGAAGACTTTCACACTGTTGTAAA
AGAAAAGTCTTTTGGTGAGGGAcactttttcaaatcaaaacgtTTGTATG
TTTCCGGAGTCTTGATTGAAAGAAAATGTGATTTCCTTCGAGAAGATTCT
GGTGTGAGTATGTGTCCTCGAAGTTTTCAAGAAATATCTCAATGTCCAAC
TACAGAAAATACGAGATTTCAGAATTTGAATTCGAGCAAGaatgtaaaaa
aacaaaagctgaaaattgaaaattctacATTATGTACCTATCTTattttt
taagcattttgtACCGCTGTTTCTTTTACGTATttcaaaaaccttatttt
tgtCTGCAGAGTGATGATTTTAAATATATAGACCATCAGCGCGG
Run BLAST on NCBI

transcript from alignment at scaffold_313:463455..463948-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058753 ID=TCONS_00058753|Name=TCONS_00058753|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at scaffold_313:463455..463948- (Clytia hemisphaerica)
TGAAAAGATTGTCCTCCCATACAACCCATACATGAAGTCTTACTCATCAA
GCAACATTGATTTGTTCGAACAGTTATGCACAAACTGGGACCAAGTCAAC
ACACAAGATTTTGTCCTCCCGACTGGCGAAGACTTTCACACTGTTGTAAA
AGAAAAGTCTTTTGGTGAGGGACACTTTTTCAAATCAAAACGTTTGTATG
TTTCCGGAGTCTTGATTGAAAGAAAATGTGATTTCCTTCGAGAAGATTCT
GGTGTGAGTATGTGTCCTCGAAGTTTTCAAGAAATATCTCAATGTCCAAC
TACAGAAAATACGAGATTTCAGAATTTGAATTCGAGCAAGAATGTAAAAA
AACAAAAGCTGAAAATTGAAAATTCTACATTATGTACCTATCTTATTTTT
TAAGCATTTTGTACCGCTGTTTCTTTTACGTATTTCAAAAACCTTATTTT
TGTCTGCAGAGTGATGATTTTAAATATATAGACCATCAGCGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037008XLOC_037008Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058753-exon-scaffold_313-1575043694:463455..463948TCONS_00058753-exon-scaffold_313-1575043694:463455..463948Clytia hemisphaericaexon
TCONS_00058753-exon-scaffold_313-1510915933:463455..463948TCONS_00058753-exon-scaffold_313-1510915933:463455..463948Clytia hemisphaericaexon
TCONS_00058753-exon-scaffold_313-1491911889:463455..463948TCONS_00058753-exon-scaffold_313-1491911889:463455..463948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:463455..463948 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2407	2.79199	1.26852	0.827364	0.167873	0.663276	0.320086	0.14983	0.209799	0	0	0	0.24837	0	0.0706857	0.22757	0.0934491	0.383129	0.132329	0	0.240715	0.176119	0.999111	1.68691	0	0.238563	0	0	0.552667	0.84462
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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