TCONS_00058754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058754
Unique NameTCONS_00058754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058754 ID=TCONS_00058754|Name=TCONS_00058754|organism=Clytia hemisphaerica|type=transcript|length=1243bp
AACAAttataaaacaacaaaaaacaaacaaagaaaaaaaggaacGATGAC
CACATTACAGCTTGTGGGGATGACAACCTTTAAATAAACCTTCGAATCAT
AACGATAAGGAAAACGGATATTGTGAATCTGAGGGTAGTGATTCTGACGA
GTTTAGTTACGATTGCGATGACGGAGAAAATTATTCTGATGAAATCAATC
CACCGGCAGTCGATTTTGCTTCCAAATGCATTCTCAAATTTTTCGATGGA
GTAGAGAACAAACCAGGAATTGACTCTTTTATAAATGCTTCACGCAAATG
GACAGAGATTGACCCGAGTGACGGCTATGATAGAATTCGGAATTGGCGTG
ATGATACCCCTCTAATAGCTGCTGTGCGAAATGGTCATTTTGAAGTCGTC
CGTCGTTTATTAGTACTTGGTGCTGATCCAACACTTTGGTGTCGACATTA
TGACCAAAATGAATGGGCGTCTAGTATTGCTTTAAGGCGTTTTGAATCTT
TCAACGAAGAGAGAGACCGTTACCTTCAAGGTGATTTTCCGCCGTTTAGT
TCATTCAGGGGAGAAAAACTTGACCCAGAGATACTTGCTTTGGATAACCT
ATACAGAACTAACGAATTCCAGAATATCATCGTTGTTTTGAGAATAGCTG
AGCAGTACTGGGAACGAGCTAGTTATTATCCATTTGGTGATATAACCTGG
GGACGCGATAAAGAATTGCTCAAATGTCCCAATAAACCTTCTAATGAGAC
AGAAATGAGAAGAAAGTTGAATGGAGTTATTCGATCACTGCCCGATATGA
GACGACTAGAGCCCCTTGCACAAGCCATTGTTCaatttaggaaaaagaaa
gAGTCTGAACGTTTGTTGGCCATCAATTCTTCTTTGCAACAGTTGTTATC
AANTCATCTGGTGATATAACCTGGGGACGCGATAAAGAATTGGTCAAATG
TCCCAATAAACCTTCTAATGAGACAGAAATGAGAAGAAAGTTGAATAGAG
TTATTCGATCACTGCCTGATATGAGACGACTAAAGCCCCTTGCACAAGCC
ATTGTTCaatttaggaaaaagaaagAGTCTGAACGTTTGTTGGCCATCAA
TTCTTCTTTGCAACAGTTGTTATCAACGGATGAAGATAATACTTTGAGCT
CAGATTATCCAGAAAATGGAGCAGCAGCGAACACCGTTATGCACAAACTG
GGACCAAGTCAACACACAAGATTTTGTCCTCCCGACTGGCGAA
Run BLAST on NCBI

transcript from alignment at scaffold_313:463819..468584-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058754 ID=TCONS_00058754|Name=TCONS_00058754|organism=Clytia hemisphaerica|type=transcript|length=4766bp|location=Sequence derived from alignment at scaffold_313:463819..468584- (Clytia hemisphaerica)
AACAATTATAAAACAACAAAAAACAAACAAAGAAAAAAAGGAACGATGAC CACATTACAGCTTGTGGGGATGACAACCTTTAAATAAACCTTCGAATCAT AACGATAAGGGTAAGAATAACTTATTGATGTCAAGTACAATCCGTCACTT CTCTGATCAAATTCAAAATGATATCCCGTCTACTAGCAAAAGGTCTATGT AGATGACATTATCCTCTATTAGGCGAGACCAATTTAATTTCTTGTTCTAC GGGCCCGTCCGACCCTATTTTTGCTAAAATCAAAAAAATAATAATATTGA ATTTCCACTACATAATATTTTACACACTAGTTATTTGTAAAAATCAAATT TGAATAAAGCTGAAAATTAATTCAAGAAATGAAATGAAAAATTTATTCTT ATTTTACCGACCGACCGACCGACCGACCCATATTTTGCTAACGATCTGCC CGTAGAACAACAAATTAAATTGGTCTCGCCTTAGTGATAGTAAAACGTGG CAAAAAACCCTTAGAGTTTAGTAGAGCCCAAACCTTGCATGTCTGAATTC CAGACCCAAAAATGTTTCTATGTGCAATCCTATTGCTGTTTTTAGCACTC GTCAACCGTAATAAAGGAAACTAAGGAGGATGGGTAAGCTGAATTTTCAA GTTAAAAGCGCATTTGTATATTTCAATACAAAGTAGATGATTCAGACGTG CTAGTTGATTTTAAGTTCTGCATTCTCATGATAATTCACAATTATCAATT TCGATTCCTTCGAATCCCATTTTTACTCGCAAAGTTCACGTTACAAATTT TCTGGTTGGCCAAGTAGAAAACGTCTAATTACGTTTTTACAAGAAAGATT AAATGTTCTTAATATCGTTGTTTTTTTCTATTTTCTTATTACATTATTGG GCTCTTCCAGAAAAAAAATTGAATATGGGGGTGGATGATGTAACAATTTT CAGTGACTTACCCCCCGGACAAAGTGACTTTTGGCCCCCCAGACAAGCAT CAGTTGACCCCCGGACAACCCAAATTACCCCCGGACAGAGCAAATTTACC CCCCGGACAAGGAAAATTTTGTTGATTTTTCGCTACCACACGGACAATAG TACGGACATTTTCTGGAAGAGCCCATTAGCCTTTAGATAGGTCCAGCTGA ATATTTTCTTTTTTTTATTCTCTTCCAAGAAAACGGATATTGTGAATCTG AGGGTAGTGATTCTGACGAGTTTAGTTACGATTGCGATGACGGAGAAAAT TATTCTGATGAAATCAATCCACCGGCAGTCGATTTTGCTTCCAAATGCAT TCTCAAATTTTTCGATGGAGTAGAGAACAAACCAGGAATTGACTCTTTTA TAAATGCTTCACGCAAATGGACAGAGATTGACCCGAGTGACGGCTATGAT AGAATTCGGAATTGGCGTGATGATACCCCTCTAATAGCTGCTGTGCGAAA TGGTCATTTTGAAGTCGTCCGTCGTTTATTAGTACTTGGTGCTGATCCAA CACTTTGGTGTCGACATTATGACCAAAATGAATGGGCGTCTAGTATTGCT TTAAGGCGTTTTGAATCTTTCAACGAAGAGAGAGACCGTTACCTTCAAGG TGATTTTCCGCCGTTTAGTTCATTCAGGGGAGAAAAACTTGACCCAGAGA TACTTGCTTTGGATAACCTATACAGAACTAACGAATTCCAGAATATCATC GTTGTTTTGAGAATAGCTGAGCAGTACTGGGAACGAGCTAGTTATTATCC ATTTGGTGATATAACCTGGGGACGCGATAAAGAATTGCTCAAATGTCCCA ATAAACCTTCTAATGAGACAGAAATGAGAAGAAAGTTGAATGGAGTTATT CGATCACTGCCCGATATGAGACGACTAGAGCCCCTTGCACAAGCCATTGT TCAATTTAGGAAAAAGAAAGAGTCTGAACGTTTGTTGGCCATCAATTCTT CTTTGCAACAGTTGTTATCAANTCATCTGGTGATATAACCTGGGGACGCG ATAAAGAATTGGTCAAATGTCCCAATAAACCTTCTAATGAGACAGAAATG AGAAGAAAGTTGAATAGAGTTATTCGATCACTGCCTGATATGAGACGACT AAAGCCCCTTGCACAAGCCATTGTTCAATTTAGGAAAAAGAAAGAGTCTG AACGTTTGTTGGCCATCAATTCTTCTTTGCAACAGTTGTTATCAACGGAT GAAGATAATACTTTGAGCTCAGATTATCCAGAAAATGGAGCAGCAGCGAA CACCGGTAACTTTTTTCTCTTCTCTTAAGGGCTCTGACCATAGTGAATTT CTGATATTTGCCACTTACAAAATGTTAAGTTCTACTTGATGTAGCCCANC GGTAGATGGTGTATATTTTATCGAACTAAAATTATTTTTAAAAGAACTTC GAAACCAAAAGCTTAATTACCCATTAAAACTTAGCACTTTTTAAAAAAAG AAGGTGGTACAACATATTATTAACGTCTTTTTAGTAAGTTCATAACGTCA TTTTTGTAATTACATTCTTAATTACTCTTAAGGGATTTGATTAAAAAGCA ATTTGTAAAAGCAATTCTTTGTTAAAATTGTTAAAGAACCTAAAACATAA CTTTTATGTTCAGATACTAAAATCAAATTTTGGACTATTGTCAGAGCCCT TAAGGGACCATTCGCGTACGCTCTAACAGTNATTCGCGTACGCTCTAACA GTATCCCCCAGGTTCCCCCCTTTTTTTAATTTTTGCTGAATTTGAAATTA GTATCTGACTTAAAATGTTGTATAATGTAAGTATAAAAAAACTTATTTGA ATCGTTTACACTATACTCTGATGCCATATAAAAGCATCCTTCATTCTATA ATTGAAATTAAATTTTTATTTAACTTTTGCTGCTCTCAATCCTTTCAATC AACCAAAATTCATTAAAAACTAGAGTTAAACAAACTGTAACTTTTTTAGT TGTGTTAAAATTTTTCTGTCCATAACGTTCATCATATAGGCTATGTTACA AAGACTCTAGGCGCGCCTAATACAATGAGTTTTATATTTAGTCTAGTTTA TCAACTAGTTTTATGAATTTGATACATTTTGCCAATTTAGTTCAAGAAAC TTAACTTACGGTGTCTTAGAATGAGAAGAACTTGTTTTCATTTTCAAGAG TCTAAAGTGTGGTACATAATTCATGATATTCATGACGTAATGTTATCTAC GGAAAGACCCGGTTTTTGCCAGTAGTGGCAAATTTTATATAACTTTTGTC TAGTTTATATTTGCCACTACTGGCTAAAACCGGGGTCTTTCCGTAGATAT TATTACGTCATGAATATCATGAATATAAGTGATTAATAAGAGGAATGTTC TTTGAATAAAAACATCCACAGATTTTATTTAGCGTCCCTTGTATGCAGTA TCCTATGCATATAACTTTTAGCATTTTTACGGATTGCCAATTTAGGGGGG GGGGGGCCCCCTTTTTCAGAAAAAAAGGGATTTTCAAGTTTGTATTGACA CCAATTTAGGGGGTGGGTCCCCCCTTTTGTAGAAAATTAGGGTTTTCAAG TTGGTATTGATACCAATTTGAGGGTGGTGGTGTCTACTACTTTCAAATCT CGAAAAGTCTGGTTTTTGGACCCTGGGTTGGTATCCTAGACCCTGACCCC CCTGTAATAGCTTGATATATGCATAACATTAGTAAGATGGGTTAAAATTT TATAATATTTTGATTTTTCAAATAGAAAGTAAAAAAAAAACAGTTTGAAA AAATTCGCGTACATAACATCTTCTTCGTACGACCTTTTGAATGGAAGTAA AACTCTGTTATTCTTCCTTATAATATAAGGAAAGTTTCAAGTCTGACTTT TCTGTTCCACAATCATGAAATTTCATAAAAATAGAAACTCCCTGCAAAAT TTTAAACACCACAAATGATTTTTAAGTGTTCTAATTTAGTTCTAGAACGT AGAGTTCTAGCTCTGGCTTTCTCAAGACTTAGGGTGCCTAAGGATCTCAT AACCCAAAACCCCAAACTGTTCCATTAAGGCTGAGATACTTTAGGCGTAC AAACTTTCGCGAGCAGAAACTTTCGCGAGGACGAAAAATCGCGAAATTCA CGACATTTACTTTCGCGAATTTAACGGAAAAATATTTTTCGCGAGCATAA ACTTTCGCGAATCAAGACGTAAAATTGAGAATTTTCACATGAAAAAATGG CTCAGAGATACAAATACTTCTTCGGTTGGCTTGACACATTTGTCCTTTGA CTTATTAGTCTTTTAGCAGGCTAAAAAGTGCCATAAAAGTTACATTTTAT TCAAAGTTTGAAGTTTTACAGATTTTCTATTTTTCANNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNATTTTTCGCGAGCATAAACTTTTGCGAATGGC CCTTCCTAGAATTTTTAAAGATATTTACTTTCGCGAAAAGGGCCAAAATT CGCGAAAATCGCGAAAATCGCGAAAGTTTCTGCTCGCGAAAGTTTCTACG CCTAAAGTAAAGCCTGGAAGCTGAAATCGCAATTCTTGTCCATTCTTTAA ATTCTGAACAACTTGAAAATAACCAAAATTCTCAATATATTCCGAACTTC ATTCCAAGGTGACACGCCCAACAAAACAAAAAAACATGAAAAGATTGTCC TCCCATACAACCCATACATGAAGTCTTACTCATCAAGCAACATTGATTTG TTCGAACAGTTATGCACAAACTGGGACCAAGTCAACACACAAGATTTTGT CCTCCCGACTGGCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037008XLOC_037008Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058754-exon-scaffold_313-1575043694:468475..468584TCONS_00058754-exon-scaffold_313-1575043694:468475..468584Clytia hemisphaericaexon
TCONS_00058754-exon-scaffold_313-1575043694:466330..467405TCONS_00058754-exon-scaffold_313-1575043694:466330..467405Clytia hemisphaericaexon
TCONS_00058754-exon-scaffold_313-1575043694:463819..463875TCONS_00058754-exon-scaffold_313-1575043694:463819..463875Clytia hemisphaericaexon
TCONS_00058754-exon-scaffold_313-1510915933:468475..468584TCONS_00058754-exon-scaffold_313-1510915933:468475..468584Clytia hemisphaericaexon
TCONS_00058754-exon-scaffold_313-1510915933:466330..467405TCONS_00058754-exon-scaffold_313-1510915933:466330..467405Clytia hemisphaericaexon
TCONS_00058754-exon-scaffold_313-1510915933:463819..463875TCONS_00058754-exon-scaffold_313-1510915933:463819..463875Clytia hemisphaericaexon
TCONS_00058754-exon-scaffold_313-1491911889:468475..468584TCONS_00058754-exon-scaffold_313-1491911889:468475..468584Clytia hemisphaericaexon
TCONS_00058754-exon-scaffold_313-1491911889:466330..467405TCONS_00058754-exon-scaffold_313-1491911889:466330..467405Clytia hemisphaericaexon
TCONS_00058754-exon-scaffold_313-1491911889:463819..463875TCONS_00058754-exon-scaffold_313-1491911889:463819..463875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:463819..468584 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (1.42354 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.234118 0.853674 0.832974 0 0 0.519521 0 0 0 0 0.428327 0.502778 0.333864 0 0 0 0 0.412607 0 0.203019 0 0 1.2479 1.42354 0.623474 0 0 0 0.297953 1.0821
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800900100011001200Sequence
Match NameE-valueIdentityDescription
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