TCONS_00058774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058774
Unique NameTCONS_00058774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058774 ID=TCONS_00058774|Name=TCONS_00058774|organism=Clytia hemisphaerica|type=transcript|length=1345bp
CACAGTCTGCTTTAGTCAATTAATGGTTAAAGATtaatatgaatattttt
tattttataaaaaatgaatgcCTTtgctaaaatctttttttatctcATCA
TTTTAGGCTCACAAACCGTCAATATGAGGACAATGTTCATGAATTTCAAA
ATCTGCAAATTTTTTTGTGCAATATTTTCAAAGTTATTATGtttcataaa
aaagaagaaaaaatcacgCGACGAGGCTTCATATTCGGCAACAACACCTC
TATCCACCATTCAGATCCAAGGCTCAGGAAAAACTACAGATATCGATTTG
GTGGATTGGAATAATTGGGGAGAAGATGcctcaaaaaatgaagaaaatca
agAAGAGTCAGAAATATCAGCCGTCGAATTATTCAAAGATATGGAACCCA
CCATAGCCAAAGCGAAAGTgGTTCATGTGAAGCAAACGATTCGTAAACCC
ACTACACCAACAAAACAGAAATCTCCTTCGTCACCTTTTGCGTTTCAATC
GAAATTCTCGGATAGTCGAAAATCAAGATATACACCTAAATATCAAGTTG
AGGCGGAGCTTGGTACGATGGACGACGGAGATGAAGGGGGTTGGGATGAG
CAATTAGATGATCTGGACATCAAtcaagaaactgaaaatatgctcaaaca
aaataaacaattagAACGTCAAAAGCGAGCTGAAGAACAGCGTAGAAAGA
AATTAGAACGTGATCAACATAGACTTAATCGTGGTAAAAATGAAACAAGT
TTTGGAGTCAAGGTTACGTAATATTTTATGCGATTTTTGGAACGGCTAAT
TCAATTGAGGTTTTCTCCCCGTGATAGGAGATTTGAAAACCTTTAGAGTT
TTTATGAAGATgcattttaaaaatatcaattccaTTCGGATCTAATGTTT
TTAAAGAAGTGAAATTTCAAGGTTTTGGTTCTGCCAAATTAATTGCGATT
CATCCACAGCATTCTGAATCAAAATTGCGAATCCCTTATCACACTAACTT
TTCTAGCAAACAGTCTATTTTTGGCGTTATGTTATGGATGGATGTTAACC
TCTTTTCACATATTTATTGTACATATATTATACATTACAtggcttattat
ttttttgacaaattttttcttacatttatTTGGAATAGAAACATTCAAAT
TTGTCTGACAATGTAAAGACATTGCAGGCCCTGAAATCTGTTTCATTTTG
GTCGATTAAGgcgacgaatttgaaatttcggGGGACCTTATTTTAGTAac
ttatttttttctcgatcaAAACTTTACCTCCTCGATTCTAAAAAAAGGTC
AATAAGATAATGGACTTGTTCTAGAATCGTCTTACAATCAACGCC
Run BLAST on NCBI

protein sequence of TCONS_00058774-protein

>TCONS_00058774-protein ID=TCONS_00058774-protein|Name=TCONS_00058774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MNAFAKIFFYLIILGSQTVNMRTMFMNFKICKFFCAIFSKLLCFIKKKKK
SRDEASYSATTPLSTIQIQGSGKTTDIDLVDWNNWGEDASKNEENQEESE
ISAVELFKDMEPTIAKAKVVHVKQTIRKPTTPTKQKSPSSPFAFQSKFSD
SRKSRYTPKYQVEAELGTMDDGDEGGWDEQLDDLDINQETENMLKQNKQL
ERQKRAEEQRRKKLERDQHRLNRGKNETSFGVKVT
Run BLAST on NCBI

transcript from alignment at scaffold_313:666152..668379-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058774 ID=TCONS_00058774|Name=TCONS_00058774|organism=Clytia hemisphaerica|type=transcript|length=2228bp|location=Sequence derived from alignment at scaffold_313:666152..668379- (Clytia hemisphaerica)
CACAGTCTGCTTTAGTCAATTAATGGTTAAAGATTAATATGAATATTTTT
TATTTTATAAAAAATGAATGCCTTTGCTAAAATCTTTTTTTATCTCATCA
TTTTAGGCTCACAAACCGTCAATATGAGGACAATGTTCATGAATTTCAAA
ATCTGCAAATTTTTTTGTGCAATATTTTCAAAGTTATTATGTTTCATAAA
AAAGAAGAAAAAATCACGCGACGAGGCTTCATATTCGGCAACAACACCTC
TATCCACCATTCAGATCCAAGGCTCAGGAGTGAGTATAATAGTGATGAAT
TCCTTCTTTCTTAGCATGCCCTAATCTTAAAGAATGCTGATCCCTAAAGG
TTTTCTTGGCTTTCTACCATGGAAAGAGTCTTTTGATTACCTATCCCCCA
AACATCATACTAAAATGGAAAATGAAATTTAAAGTACAAGAATACTAATA
GTACACAATTCTGACTATAAAAGGAAGTCTTCACACAACACCCTTCTTTA
TGAGGGATTCCTTTTCTTACTATTTTCCTGCTGGAAATTTCGAATCAACC
CAACACAGCAGGTTAATTTTTAAAAACCGTCAAAAAAGAATTTCTGATGG
GGTTTTGAGAGCAGATGTAATTTTTTGCAGTTTTTCAGAGCAGCTGAAAT
ACCTAGAGAAATTAAAATTCATACAAACTTACTTTTACATGCCATTTGAT
AGAAAAATAATATATGAAAATGTTTTCATCGTAGAAAACTACAGATATCG
ATTTGGTGGATTGGAATAATTGGGGAGAAGATGCCTCAAAAAATGAAGAA
AATCAAGAAGAGTCAGAAATATCAGCCGTCGAATTATTCAAAGATATGGA
ACCCACCATAGCCAAAGCGAAAGTGGTAATGTTAATGTTAATGTATCTTC
TTTAGTCAAATGACAAATGTGTACAAATTTAGAATTTCTCTTTGGATCAA
AAAGCTAAAAAAAGAATACTCCTAAATTGAAAATTTTAATCATTTTATTC
TTTTGAAATAGGTTCATGTGAAGCAAACGATTCGTAAACCCACTACACCA
ACAAAACAGAAATCTCCTTCGTCACCTTTTGCGTTTCAATCGAAATTCTC
GGATAGTCGAAAATCAAGATATACACCTAAATATCAAGTTGAGGTACATT
CTTAAGAAATTTTATTGTTATCTTTCAAAAAAAAAGTTAACTTATTAACG
CGAAAGGTTTTTACCTTGGCTCAAATTTTGTTCAACGCTTGGTATTAATA
ACGAGAGGTGTATCCAATTCGCGTTAATTACTTAAGTTGCTATATAAGTA
TAATAAGGTAAGCTTTTGAAGACAAAGAGAGTGAGAGAGAGAGTAAAAAG
AGCTTATTTGCCGGCCAATTTGAAACGAATGTTTTAGGACTTTACCTACC
AATGTGTGATAAGTTTTCTGTCATTTCGTTTGCAGGCGGAGCTTGGTACG
ATGGACGACGGAGATGAAGGGGGTTGGGATGAGCAATTAGATGATCTGGA
CATCAATCAAGAAACTGAAAATATGCTCAAACAAAATAAACAATTAGAAC
GTCAAAAGCGAGCTGAAGAACAGCGTAGAAAGAAATTAGAACGTGATCAA
CATAGACTTAATCGTGGTAAAAATGAAACAAGTTTTGGAGTCAAGGTTAC
GTAATATTTTATGCGATTTTTGGAACGGCTAATTCAATTGAGGTTTTCTC
CCCGTGATAGGAGATTTGAAAACCTTTAGAGTTTTTATGAAGATGCATTT
TAAAAATATCAATTCCATTCGGATCTAATGTTTTTAAAGAAGTGAAATTT
CAAGGTTTTGGTTCTGCCAAATTAATTGCGATTCATCCACAGCATTCTGA
ATCAAAATTGCGAATCCCTTATCACACTAACTTTTCTAGCAAACAGTCTA
TTTTTGGCGTTATGTTATGGATGGATGTTAACCTCTTTTCACATATTTAT
TGTACATATATTATACATTACATGGCTTATTATTTTTTTGACAAATTTTT
TCTTACATTTATTTGGAATAGAAACATTCAAATTTGTCTGACAATGTAAA
GACATTGCAGGCCCTGAAATCTGTTTCATTTTGGTCGATTAAGGCGACGA
ATTTGAAATTTCGGGGGACCTTATTTTAGTAACTTATTTTTTTCTCGATC
AAAACTTTACCTCCTCGATTCTAAAAAAAGGTCAATAAGATAATGGACTT
GTTCTAGAATCGTCTTACAATCAACGCC

Coding sequence (CDS) from alignment at scaffold_313:666152..668379-

>TCONS_00058774 ID=TCONS_00058774|Name=TCONS_00058774|organism=Clytia hemisphaerica|type=CDS|length=2832bp|location=Sequence derived from alignment at scaffold_313:666152..668379- (Clytia hemisphaerica)
GCGGAGCTTGGTACGATGGACGACGGAGATGAAGGGGGTTGGGATGAGCA
ATTAGATGATCTGGACATCAATCAAGAAACTGAAAATATGCTCAAACAAA
ATAAACAATTAGAACGTCAAAAGCGAGCTGAAGAACAGCGTAGAAAGAAA
TTAGAACGTGATCAACATAGACTTAATCGTGGTAAAAATGAAACAAGTTT
TGGAGTCAAGGTTACGTAAGTTCATGTGAAGCAAACGATTCGTAAACCCA
CTACACCAACAAAACAGAAATCTCCTTCGTCACCTTTTGCGTTTCAATCG
AAATTCTCGGATAGTCGAAAATCAAGATATACACCTAAATATCAAGTTGA
GAAAACTACAGATATCGATTTGGTGGATTGGAATAATTGGGGAGAAGATG
CCTCAAAAAATGAAGAAAATCAAGAAGAGTCAGAAATATCAGCCGTCGAA
TTATTCAAAGATATGGAACCCACCATAGCCAAAGCGAAAGTGATGAATGC
CTTTGCTAAAATCTTTTTTTATCTCATCATTTTAGGCTCACAAACCGTCA
ATATGAGGACAATGTTCATGAATTTCAAAATCTGCAAATTTTTTTGTGCA
ATATTTTCAAAGTTATTATGTTTCATAAAAAAGAAGAAAAAATCACGCGA
CGAGGCTTCATATTCGGCAACAACACCTCTATCCACCATTCAGATCCAAG
GCTCAGGAGCGGAGCTTGGTACGATGGACGACGGAGATGAAGGGGGTTGG
GATGAGCAATTAGATGATCTGGACATCAATCAAGAAACTGAAAATATGCT
CAAACAAAATAAACAATTAGAACGTCAAAAGCGAGCTGAAGAACAGCGTA
GAAAGAAATTAGAACGTGATCAACATAGACTTAATCGTGGTAAAAATGAA
ACAAGTTTTGGAGTCAAGGTTACGTAAGTTCATGTGAAGCAAACGATTCG
TAAACCCACTACACCAACAAAACAGAAATCTCCTTCGTCACCTTTTGCGT
TTCAATCGAAATTCTCGGATAGTCGAAAATCAAGATATACACCTAAATAT
CAAGTTGAGAAAACTACAGATATCGATTTGGTGGATTGGAATAATTGGGG
AGAAGATGCCTCAAAAAATGAAGAAAATCAAGAAGAGTCAGAAATATCAG
CCGTCGAATTATTCAAAGATATGGAACCCACCATAGCCAAAGCGAAAGTG
ATGAATGCCTTTGCTAAAATCTTTTTTTATCTCATCATTTTAGGCTCACA
AACCGTCAATATGAGGACAATGTTCATGAATTTCAAAATCTGCAAATTTT
TTTGTGCAATATTTTCAAAGTTATTATGTTTCATAAAAAAGAAGAAAAAA
TCACGCGACGAGGCTTCATATTCGGCAACAACACCTCTATCCACCATTCA
GATCCAAGGCTCAGGAGCGGAGCTTGGTACGATGGACGACGGAGATGAAG
GGGGTTGGGATGAGCAATTAGATGATCTGGACATCAATCAAGAAACTGAA
AATATGCTCAAACAAAATAAACAATTAGAACGTCAAAAGCGAGCTGAAGA
ACAGCGTAGAAAGAAATTAGAACGTGATCAACATAGACTTAATCGTGGTA
AAAATGAAACAAGTTTTGGAGTCAAGGTTACGTAAGTTCATGTGAAGCAA
ACGATTCGTAAACCCACTACACCAACAAAACAGAAATCTCCTTCGTCACC
TTTTGCGTTTCAATCGAAATTCTCGGATAGTCGAAAATCAAGATATACAC
CTAAATATCAAGTTGAGAAAACTACAGATATCGATTTGGTGGATTGGAAT
AATTGGGGAGAAGATGCCTCAAAAAATGAAGAAAATCAAGAAGAGTCAGA
AATATCAGCCGTCGAATTATTCAAAGATATGGAACCCACCATAGCCAAAG
CGAAAGTGATGAATGCCTTTGCTAAAATCTTTTTTTATCTCATCATTTTA
GGCTCACAAACCGTCAATATGAGGACAATGTTCATGAATTTCAAAATCTG
CAAATTTTTTTGTGCAATATTTTCAAAGTTATTATGTTTCATAAAAAAGA
AGAAAAAATCACGCGACGAGGCTTCATATTCGGCAACAACACCTCTATCC
ACCATTCAGATCCAAGGCTCAGGAGCGGAGCTTGGTACGATGGACGACGG
AGATGAAGGGGGTTGGGATGAGCAATTAGATGATCTGGACATCAATCAAG
AAACTGAAAATATGCTCAAACAAAATAAACAATTAGAACGTCAAAAGCGA
GCTGAAGAACAGCGTAGAAAGAAATTAGAACGTGATCAACATAGACTTAA
TCGTGGTAAAAATGAAACAAGTTTTGGAGTCAAGGTTACGTAAGTTCATG
TGAAGCAAACGATTCGTAAACCCACTACACCAACAAAACAGAAATCTCCT
TCGTCACCTTTTGCGTTTCAATCGAAATTCTCGGATAGTCGAAAATCAAG
ATATACACCTAAATATCAAGTTGAGAAAACTACAGATATCGATTTGGTGG
ATTGGAATAATTGGGGAGAAGATGCCTCAAAAAATGAAGAAAATCAAGAA
GAGTCAGAAATATCAGCCGTCGAATTATTCAAAGATATGGAACCCACCAT
AGCCAAAGCGAAAGTGATGAATGCCTTTGCTAAAATCTTTTTTTATCTCA
TCATTTTAGGCTCACAAACCGTCAATATGAGGACAATGTTCATGAATTTC
AAAATCTGCAAATTTTTTTGTGCAATATTTTCAAAGTTATTATGTTTCAT
AAAAAAGAAGAAAAAATCACGCGACGAGGCTTCATATTCGGCAACAACAC
CTCTATCCACCATTCAGATCCAAGGCTCAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037017XLOC_037017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058774-exon-scaffold_313-1575043694:668101..668379TCONS_00058774-exon-scaffold_313-1575043694:668101..668379Clytia hemisphaericaexon
TCONS_00058774-exon-scaffold_313-1575043694:667505..667645TCONS_00058774-exon-scaffold_313-1575043694:667505..667645Clytia hemisphaericaexon
TCONS_00058774-exon-scaffold_313-1575043694:667237..667368TCONS_00058774-exon-scaffold_313-1575043694:667237..667368Clytia hemisphaericaexon
TCONS_00058774-exon-scaffold_313-1575043694:666152..666944TCONS_00058774-exon-scaffold_313-1575043694:666152..666944Clytia hemisphaericaexon
TCONS_00058774-exon-scaffold_313-1510915933:668101..668379TCONS_00058774-exon-scaffold_313-1510915933:668101..668379Clytia hemisphaericaexon
TCONS_00058774-exon-scaffold_313-1510915933:667505..667645TCONS_00058774-exon-scaffold_313-1510915933:667505..667645Clytia hemisphaericaexon
TCONS_00058774-exon-scaffold_313-1510915933:667237..667368TCONS_00058774-exon-scaffold_313-1510915933:667237..667368Clytia hemisphaericaexon
TCONS_00058774-exon-scaffold_313-1510915933:666152..666944TCONS_00058774-exon-scaffold_313-1510915933:666152..666944Clytia hemisphaericaexon
TCONS_00058774-exon-scaffold_313-1491911889:668101..668379TCONS_00058774-exon-scaffold_313-1491911889:668101..668379Clytia hemisphaericaexon
TCONS_00058774-exon-scaffold_313-1491911889:667505..667645TCONS_00058774-exon-scaffold_313-1491911889:667505..667645Clytia hemisphaericaexon
TCONS_00058774-exon-scaffold_313-1491911889:667237..667368TCONS_00058774-exon-scaffold_313-1491911889:667237..667368Clytia hemisphaericaexon
TCONS_00058774-exon-scaffold_313-1491911889:666152..666944TCONS_00058774-exon-scaffold_313-1491911889:666152..666944Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058774-proteinTCONS_00058774-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:666152..668379 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
43.2006	43.7061	12.8547	7.50755	25.9573	19.3139	25.548	25.0074	16.7735	13.7567	17.1037	20.0531	19.2616	23.6605	16.3616	11.9775	10.1232	13.6665	19.5994	13.5994	13.2725	11.3151	40.3686	35.5658	14.4182	13.9218	5.68045	5.93565	14.1027	16.9816
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017025Cancer-assoc_antigen_RCAS1
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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