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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058784 ID=TCONS_00058784|Name=TCONS_00058784|organism=Clytia hemisphaerica|type=transcript|length=1188bp
atgatattttggccaatgtTTCTAGTTGGAGGGGgtccgggtctgtgaga
aagagGTGTAAAAACTGAATGGTTCATGATTAAGATACAGAATTAAAGAA
ATGAGCTGGAGTAATTACATATTCGTATAAAAAGCTTCATATTTATCATT
GAAACGATAACACGATATATTTTAAAGTCTATAAAGAAGTTTATTTAATT
CACAAGAGGTTCTCCATTCTTAATAGTCATCTCTGTAATGTATCTGTCCG
AAAATTTCCGCAACACAGCTTTACGTCCAAAAATCTTTTGCATTAACTGT
CGTCTTGCTTCAGCATTCAGTGCAAAGAAAATAAGAACGTCCCATATTCC
ATTACTAAAACTAACAACCGCAAAAATCTTCCTCAAAAGGAGTGAAGTGT
CCGTTTTTTGATTTCCGATGGCCACCACGATCAAGGGAAACCAGGTAAAA
ATGTAAGAGCTGGCAATGAATAAAcatattttcaaagattttaattGACG
TTTTCTTATCTCGTTccgtttttcattttgtttttgagtgGAGCGATCGA
CAATGGTTGCTGCTATTTGACTACATTGTTTCTTGACGGATCGGTACAGT
AAAAAGTTTGATATGATGATAAAAATGCCACCACTTGTTATAACGATGAA
AGCTGAAAGGTAAGCTTTAACTGAGAATATCGAAAATATTGTGAAGAAGG
TTGTTAACCCGATCGCTACTCCGATGCTTGCAATCCCATGTATCTTTGTC
AGTTTAGCGTAGAAGAACGGTTTTCGTACTGCTATGAACCTCTCGAACGA
TAGAAGGATAGAGAAATTGATTTCCAAGCTGATCGCGCAATCTCGAGCAA
TAATAGCTCCAGTGTAACCTTTGGAATAGACATCTGACCAGATATCGAAA
GAAATGTATATGATAATGCATATCCCGTTCAGTAAATGCGATAAGAATAA
CGCGCTGAGAAGGATATTGTAGAAGGATGAACGAAGGTTTCTGGACGACA
CAATAATGCCAAATGAAACAAAGttcaggaaaatcaaaataaatcctTCC
ACAAAAATAAAACTATTAGCAATTTcgatttgctttttaatcatattttt
tctaaaatattttcaacaaacTAGAAAATTGACCAAGCGAAAAAATTCCA
ATAGATCAGAACAATTTTTAGGCTTGGAAGAGAACTGA Run BLAST on NCBI protein sequence of TCONS_00058784-protein >TCONS_00058784-protein ID=TCONS_00058784-protein|Name=TCONS_00058784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MIKKQIEIANSFIFVEGFILIFLNFVSFGIIVSSRNLRSSFYNILLSALF
LSHLLNGICIIIYISFDIWSDVYSKGYTGAIIARDCAISLEINFSILLSF
ERFIAVRKPFFYAKLTKIHGIASIGVAIGLTTFFTIFSIFSVKAYLSAFI
VITSGGIFIIISNFLLYRSVKKQCSQIAATIVDRSTQKQNEKRNEIRKRQ
LKSLKICLFIASSYIFTWFPLIVVAIGNQKTDTSLLLRKIFAVVSFSNGI
WDVLIFFALNAEARRQLMQKIFGRKAVLRKFSDRYITEMTIKNGEPLVN Run BLAST on NCBI transcript from alignment at scaffold_313:77900..79087 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058784 ID=TCONS_00058784|Name=TCONS_00058784|organism=Clytia hemisphaerica|type=transcript|length=1188bp|location=Sequence derived from alignment at scaffold_313:77900..79087 (Clytia hemisphaerica)
TCAGTTCTCTTCCAAGCCTAAAAATTGTTCTGATCTATTGGAATTTTTTC
GCTTGGTCAATTTTCTAgtttgttgaaaatattttagaaaaaatatgatt
aaaaagcaaatcgAAATTGCTAATAGTTTTATTTTTGTGGAaggatttat
tttgattttcctgaaCTTTGTTTCATTTGGCATTATTGTGTCGTCCAGAA
ACCTTCGTTCATCCTTCTACAATATCCTTCTCAGCGCGTTATTCTTATCG
CATTTACTGAACGGGATATGCATTATCATATACATTTCTTTCGATATCTG
GTCAGATGTCTATTCCAAAGGTTACACTGGAGCTATTATTGCTCGAGATT
GCGCGATCAGCTTGGAAATCAATTTCTCTATCCTTCTATCGTTCGAGAGG
TTCATAGCAGTACGAAAACCGTTCTTCTACGCTAAACTGACAAAGATACA
TGGGATTGCAAGCATCGGAGTAGCGATCGGGTTAACAACCTTCTTCACAA
TATTTTCGATATTCTCAGTTAAAGCTTACCTTTCAGCTTTCATCGTTATA
ACAAGTGGTGGCATTTTTATCATCATATCAAACTTTTTACTGTACCGATC
CGTCAAGAAACAATGTAGTCAAATAGCAGCAACCATTGTCGATCGCTCca
ctcaaaaacaaaatgaaaaacggAACGAGATAAGAAAACGTCaattaaaa
tctttgaaaatatgTTTATTCATTGCCAGCTCTTACATTTTTACCTGGTT
TCCCTTGATCGTGGTGGCCATCGGAAATCAAAAAACGGACACTTCACTCC
TTTTGAGGAAGATTTTTGCGGTTGTTAGTTTTAGTAATGGAATATGGGAC
GTTCTTATTTTCTTTGCACTGAATGCTGAAGCAAGACGACAGTTAATGCA
AAAGATTTTTGGACGTAAAGCTGTGTTGCGGAAATTTTCGGACAGATACA
TTACAGAGATGACTATTAAGAATGGAGAACCTCTTGTGAATTAAATAAAC
TTCTTTATAGACTTTAAAATATATCGTGTTATCGTTTCAATGATAAATAT
GAAGCTTTTTATACGAATATGTAATTACTCCAGCTCATTTCTTTAATTCT
GTATCTTAATCATGAACCATTCAGTTTTTACACctctttctcacagaccc
ggacCCCCTCCAACTAGAAacattggccaaaatatcat Coding sequence (CDS) from alignment at scaffold_313:77900..79087 >TCONS_00058784 ID=TCONS_00058784|Name=TCONS_00058784|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_313:77900..79087 (Clytia hemisphaerica)
atgattaaaaagcaaatcgAAATTGCTAATAGTTTTATTTTTGTGGAagg
atttattttgattttcctgaaCTTTGTTTCATTTGGCATTATTGTGTCGT
CCAGAAACCTTCGTTCATCCTTCTACAATATCCTTCTCAGCGCGTTATTC
TTATCGCATTTACTGAACGGGATATGCATTATCATATACATTTCTTTCGA
TATCTGGTCAGATGTCTATTCCAAAGGTTACACTGGAGCTATTATTGCTC
GAGATTGCGCGATCAGCTTGGAAATCAATTTCTCTATCCTTCTATCGTTC
GAGAGGTTCATAGCAGTACGAAAACCGTTCTTCTACGCTAAACTGACAAA
GATACATGGGATTGCAAGCATCGGAGTAGCGATCGGGTTAACAACCTTCT
TCACAATATTTTCGATATTCTCAGTTAAAGCTTACCTTTCAGCTTTCATC
GTTATAACAAGTGGTGGCATTTTTATCATCATATCAAACTTTTTACTGTA
CCGATCCGTCAAGAAACAATGTAGTCAAATAGCAGCAACCATTGTCGATC
GCTCcactcaaaaacaaaatgaaaaacggAACGAGATAAGAAAACGTCaa
ttaaaatctttgaaaatatgTTTATTCATTGCCAGCTCTTACATTTTTAC
CTGGTTTCCCTTGATCGTGGTGGCCATCGGAAATCAAAAAACGGACACTT
CACTCCTTTTGAGGAAGATTTTTGCGGTTGTTAGTTTTAGTAATGGAATA
TGGGACGTTCTTATTTTCTTTGCACTGAATGCTGAAGCAAGACGACAGTT
AATGCAAAAGATTTTTGGACGTAAAGCTGTGTTGCGGAAATTTTCGGACA
GATACATTACAGAGATGACTATTAAGAATGGAGAACCTCTTGTGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058784-exon-scaffold_313-1491911889:77900..79087 | TCONS_00058784-exon-scaffold_313-1491911889:77900..79087 | Clytia hemisphaerica | exon |
| TCONS_00058784-exon-scaffold_313-1510915933:77900..79087 | TCONS_00058784-exon-scaffold_313-1510915933:77900..79087 | Clytia hemisphaerica | exon |
| TCONS_00058784-exon-scaffold_313-1575043694:77900..79087 | TCONS_00058784-exon-scaffold_313-1575043694:77900..79087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:77900..79087 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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