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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058788 ID=TCONS_00058788|Name=TCONS_00058788|organism=Clytia hemisphaerica|type=transcript|length=774bp
TTTATTGTGTAAAATTTCTTCCAAaacatacaaaatcaaaacaaaatttt
aaaagttagaGAGTGTTAATGCTTATATTAcatttgaaaaatctaaattg
gAAAAAAGTATCAATATAGAATCAGGAGGCGTTGGCAATCTTAAAGCAAG
TTAAAAAGTCAAAGTTCGTCGTTGAAGCAATTTGTTTGATATTCGGTAAG
CTTTCCATCGAAACAGCCGTTCGTCTGCAAAATCtggtttttagaaaatg
ttctACATTTGAAGTACAATTGTCCGGGAATTCCAAAGCAACGTGGGAAT
CATTCAAAGGATGTCCGAGCCAAGGACAATTATCATTGATAACGTTCAAA
CAAGTTTTACTGTTGTTAGCACTGCTAACTTTGCGTTTAATTTTTTCGAC
AGCTGACGTTTTTCTTGTTCTATTGAGTTTATTTCCAGTACTTTTAAGCT
CTTCGTGACTCAAAATGCGTTGTTGTGAAAGGTCAAGAACTTGGAGCGGT
TTAATGTATCTTGGTTTGTCGTAAATGCTGAGATTTGATGTTGAATTTGT
GAAATAATTGTATTGGATATGGCTTTCCTCTCCATATTGAGTTCTCGATC
TTGGCCGTGTTAGGTCATCGTTGTCCCAGCTATTATCATCGCCCAAGAAT
TGTGAGCTGCCCATAGTTTGAGATCTCTCCCTTCCCACAATATCATATTT
TTGTAACCTTTGATGCAACatgcttgaaaatgaaatttctctcttttttc
taTGTCTTTGATGAGACGTGTCTT Run BLAST on NCBI protein sequence of TCONS_00058788-protein >TCONS_00058788-protein ID=TCONS_00058788-protein|Name=TCONS_00058788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
DTSHQRHRKKREISFSSMLHQRLQKYDIVGRERSQTMGSSQFLGDDNSWD
NDDLTRPRSRTQYGEESHIQYNYFTNSTSNLSIYDKPRYIKPLQVLDLSQ
QRILSHEELKSTGNKLNRTRKTSAVEKIKRKVSSANNSKTCLNVINDNCP
WLGHPLNDSHVALEFPDNCTSNVEHFLKTRFCRRTAVSMESLPNIKQIAS
TTNFDFLTCFKIANAS Run BLAST on NCBI transcript from alignment at scaffold_313:141257..142030 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058788 ID=TCONS_00058788|Name=TCONS_00058788|organism=Clytia hemisphaerica|type=transcript|length=774bp|location=Sequence derived from alignment at scaffold_313:141257..142030 (Clytia hemisphaerica)
AAGACACGTCTCATCAAAGACAtagaaaaaagagagaaatttcattttca
agcatGTTGCATCAAAGGTTACAAAAATATGATATTGTGGGAAGGGAGAG
ATCTCAAACTATGGGCAGCTCACAATTCTTGGGCGATGATAATAGCTGGG
ACAACGATGACCTAACACGGCCAAGATCGAGAACTCAATATGGAGAGGAA
AGCCATATCCAATACAATTATTTCACAAATTCAACATCAAATCTCAGCAT
TTACGACAAACCAAGATACATTAAACCGCTCCAAGTTCTTGACCTTTCAC
AACAACGCATTTTGAGTCACGAAGAGCTTAAAAGTACTGGAAATAAACTC
AATAGAACAAGAAAAACGTCAGCTGTCGAAAAAATTAAACGCAAAGTTAG
CAGTGCTAACAACAGTAAAACTTGTTTGAACGTTATCAATGATAATTGTC
CTTGGCTCGGACATCCTTTGAATGATTCCCACGTTGCTTTGGAATTCCCG
GACAATTGTACTTCAAATGTagaacattttctaaaaaccaGATTTTGCAG
ACGAACGGCTGTTTCGATGGAAAGCTTACCGAATATCAAACAAATTGCTT
CAACGACGAACTTTGACTTTTTAACTTGCTTTAAGATTGCCAACGCCTCC
TGATTCTATATTGATACTTTTTTccaatttagatttttcaaatgTAATAT
AAGCATTAACACTCtctaacttttaaaattttgttttgattttgtatgtt
TTGGAAGAAATTTTACACAATAAA Coding sequence (CDS) from alignment at scaffold_313:141257..142030 >TCONS_00058788 ID=TCONS_00058788|Name=TCONS_00058788|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_313:141257..142030 (Clytia hemisphaerica)
GACACGTCTCATCAAAGACAtagaaaaaagagagaaatttcattttcaag
catGTTGCATCAAAGGTTACAAAAATATGATATTGTGGGAAGGGAGAGAT
CTCAAACTATGGGCAGCTCACAATTCTTGGGCGATGATAATAGCTGGGAC
AACGATGACCTAACACGGCCAAGATCGAGAACTCAATATGGAGAGGAAAG
CCATATCCAATACAATTATTTCACAAATTCAACATCAAATCTCAGCATTT
ACGACAAACCAAGATACATTAAACCGCTCCAAGTTCTTGACCTTTCACAA
CAACGCATTTTGAGTCACGAAGAGCTTAAAAGTACTGGAAATAAACTCAA
TAGAACAAGAAAAACGTCAGCTGTCGAAAAAATTAAACGCAAAGTTAGCA
GTGCTAACAACAGTAAAACTTGTTTGAACGTTATCAATGATAATTGTCCT
TGGCTCGGACATCCTTTGAATGATTCCCACGTTGCTTTGGAATTCCCGGA
CAATTGTACTTCAAATGTagaacattttctaaaaaccaGATTTTGCAGAC
GAACGGCTGTTTCGATGGAAAGCTTACCGAATATCAAACAAATTGCTTCA
ACGACGAACTTTGACTTTTTAACTTGCTTTAAGATTGCCAACGCCTCCTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058788-exon-scaffold_313-1491911889:141257..142030 | TCONS_00058788-exon-scaffold_313-1491911889:141257..142030 | Clytia hemisphaerica | exon |
| TCONS_00058788-exon-scaffold_313-1510915933:141257..142030 | TCONS_00058788-exon-scaffold_313-1510915933:141257..142030 | Clytia hemisphaerica | exon |
| TCONS_00058788-exon-scaffold_313-1575043694:141257..142030 | TCONS_00058788-exon-scaffold_313-1575043694:141257..142030 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:141257..142030 . |
Blast
The following BLAST results are available for this feature:
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