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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058790 ID=TCONS_00058790|Name=TCONS_00058790|organism=Clytia hemisphaerica|type=transcript|length=2865bp
ATCCCTGAAAACTCCATGGAATTTTTATCTGGGAGGTGAAATCTTATCTC
AAACCAAGATGACAAACTTTAAATATTATTGTAAGATTTACTTGGTTGAT
TTTGATCAATGTtgacttttttattatttttcagataaaatcattttaat
aagacaaataaaagaattttatgAATGATACTAAATAATATGGATGACAG
AAAATCTATCGAAGGGAGTGTCAAACTGAAAGATAAAGAACTATTCAAGA
TAAAACTAGCATTGTCCTCACTAACAAATAGTGTTATTATTTCACCTGTA
ATCGCAACATTGTATACTCAATCTACTAAAGATGATGAAACATGGAATTG
TTGTAAAAGAGGAGCACCTGGATTAATTGTATCTCATAATTCAGATTGTG
AGGTTGTCAATTGTCAGTTATGCATTGCAGATCCCGATTCAGGTTTCGCT
ATTTGGAGAGAATCTATATTACCTAAATCAGAATATAAAGCATCACAGAA
AAACTTTCACACATTTAACTTGATTTCAGATGGAGTTGATAACAAAATGG
CTGGAATAAGATTCCCCTCAGACGAGAGTGCTTGCGGTTTTTTAAAAGAT
GTTTTAGACAATATCCCTAAAGAGGGTGTTCGTGCTGATTCTCCTGTCTC
TAATAAATCACGAAAACAATctaagaaaatcaagaaaagtgAAATATCGC
AACCGTGTATGTTTAAACATGTCACTAGCGTGAACAATATGAAATCAAGA
GATAAATCACAAAGCATGAAAGTACAATCTACTAAAAGTAAAACAAGTAA
ATATTCTGGCTCTGGGTCTTCGCTGGATGCCCCAGATGCGGACCCACATC
ATGGTGTTGGTGTGAGACGCAGTAATAGTCTTTTTAAGCGGTGAAGTTCT
TACGTGGGTCTGGTTTTATGTGGGTGGGTTTTttaaaagtcttattttta
aggcaaaaaggGTCTTTGTAAATGTAAGttttatgaaattaaattttctt
tttcaaactttaaagtttATAAAGTGatggttttgttttgaaatttttta
atgagtttttctcaaatttctgtCTAATATTGTGAAAATCAGCACAtgct
tttttgtttgaaattatttcCATCTGTCGTTAGCTAATATGAGATGAGTT
TTCATGGCATTTAATAAGTCTTGAACATAAAGGAAAGATTTTCAAGTTAT
AATGAAGGCAGGTGAAGTTTTCAAACCAAATTCATCAGATAGGGAAATAT
AACGTTAGATCTTGTCTCTTTGTTCTAATATTATTTTATCAAGGACCCCT
TTTGAATTCAATATTATGTTTGTATGTTCATTGTATTCTTTTTTCACTCT
TTttatgaaacatttttcatcccAGCAGGAGTTTGGATAAATTTTGGAAT
TCACATGGAATTAATTCCCTCACTTTTGATGAATATCAGTCCAAAATCTC
CAGAATCTTCCTCAAAAAGGTTAAAAGGGTTCGTGATAAGATTGGTTCGA
TTATATTTTTAATAgcaatttactttttttgttgatcatttcaaaactat
ttccTGTAGATACTGTAAATATTAAGGGCTTTTTAATACTTTTAAAGCTT
TTGGAAATAGTATGATTTTCCCTATgtgtgtttttacgttttatttttta
catttgtttttctttcactgAAATGGGAGATTTATACCCCTGACCTATAT
TTTCTAATGCAGATTAGAATGAATTGACAATCAGTCTACACAGTAATCTG
TGGTAGGAGCTTCCTGATCTTTCATGCATTTTCTAAAAAACTGTTTTCCT
GTTCTAGATTAGCTCACCACGAccatttttgtcaatttattaTCAATCTC
GCATAATGACAGGCTATTATGTTAAACTAATCACACtagttttttaaatc
aaatgaaTTAGGCGGTCACAGCAATTCTCTTTGTCCATTCAAAGAATCAT
caacaaattttctgaaaatttttttcccacgGAATTTGTACATTGTTGTA
AAAAGATCGTCTTTTCACTTTGATAGCAAGATTATTATCAATGAAATATC
TCTCTAACTAAGGAAAGGTAGCTGTATCGTTTTGGTTTTACTATACACAG
GAAGATCTACAAATTAGTAGATAAGTATCCTTTTAGACATCTGAGGAAAC
ATTTTAATCACTACTCACTTTCCATCATTAAGGGAATCAACTACTTTGTT
TTTGACGGATGTCTATCAAATTTCATAACGAGGCCAAGGAAGTTCTGTCA
ACAAAACATTGTATCATACTTTCTAAGAAAACGTCACAAAATTCGCGCTA
CGATGTGAATTTTCACATGCCAAAATTGTGACGTGTAGTAGTAGCATTTT
CTCAATGTACTATTTATATTATCGTTAGATtgtgatttttattttattgt
gaCTAGTATTTTTTGTGTGCATTTTTTATGgcggaaaaatcaaattttag
gttttatttttgttaattgtataTGAATTATGATGAATCtttatattgaa
tttttattgACTTCATCAACAACGTGTCTTTAAAGTAAACATTACACTAA
ACTTTTGTCTCCAAATCTCTATCCCCTCTCGCTCAATGGTACGTCGGATA
TTTTAGATGTGAACGGTTTTGAAAGATTAAAACAAAGTTTCTGCTAGTAC
GTGAATCTTCTTCAAAGCCAATTGAGGTTGTTTAACACCAGACTGCGGAC
CCTGTGTTATTTTCTCGTTTGCGAAATATTCATCCTTTGATAGGATTGTT
AACCCTTTTTCGGTCAGAGTGCAACCTTTGACCTCGGCGAATCGCAAAAA
TAGTGACTGGaataatgtttttgatgattgtTTCTTATGTTGAAAGATTA
CCAGGTTAATTTAAA Run BLAST on NCBI protein sequence of TCONS_00058790-protein >TCONS_00058790-protein ID=TCONS_00058790-protein|Name=TCONS_00058790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MILNNMDDRKSIEGSVKLKDKELFKIKLALSSLTNSVIISPVIATLYTQS
TKDDETWNCCKRGAPGLIVSHNSDCEVVNCQLCIADPDSGFAIWRESILP
KSEYKASQKNFHTFNLISDGVDNKMAGIRFPSDESACGFLKDVLDNIPKE
GVRADSPVSNKSRKQSKKIKKSEISQPCMFKHVTSVNNMKSRDKSQSMKV
QSTKSKTSKYSGSGSSLDAPDADPHHGVGVRRSNSLFKR Run BLAST on NCBI transcript from alignment at scaffold_313:194667..197531 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058790 ID=TCONS_00058790|Name=TCONS_00058790|organism=Clytia hemisphaerica|type=transcript|length=2865bp|location=Sequence derived from alignment at scaffold_313:194667..197531 (Clytia hemisphaerica)
TTTAAATTAACCTGGTAATCTTTCAACATAAGAAacaatcatcaaaaaca
ttattCCAGTCACTATTTTTGCGATTCGCCGAGGTCAAAGGTTGCACTCT
GACCGAAAAAGGGTTAACAATCCTATCAAAGGATGAATATTTCGCAAACG
AGAAAATAACACAGGGTCCGCAGTCTGGTGTTAAACAACCTCAATTGGCT
TTGAAGAAGATTCACGTACTAGCAGAAACTTTGTTTTAATCTTTCAAAAC
CGTTCACATCTAAAATATCCGACGTACCATTGAGCGAGAGGGGATAGAGA
TTTGGAGACAAAAGTTTAGTGTAATGTTTACTTTAAAGACACGTTGTTGA
TGAAGTcaataaaaattcaatataaaGATTCATCATAATTCAtatacaat
taacaaaaataaaacctaaaatttgatttttccgcCATAAAAAATGCACA
CAAAAAATACTAGtcacaataaaataaaaatcacaATCTAACGATAATAT
AAATAGTACATTGAGAAAATGCTACTACTACACGTCACAATTTTGGCATG
TGAAAATTCACATCGTAGCGCGAATTTTGTGACGTTTTCTTAGAAAGTAT
GATACAATGTTTTGTTGACAGAACTTCCTTGGCCTCGTTATGAAATTTGA
TAGACATCCGTCAAAAACAAAGTAGTTGATTCCCTTAATGATGGAAAGTG
AGTAGTGATTAAAATGTTTCCTCAGATGTCTAAAAGGATACTTATCTACT
AATTTGTAGATCTTCCTGTGTATAGTAAAACCAAAACGATACAGCTACCT
TTCCTTAGTTAGAGAGATATTTCATTGATAATAATCTTGCTATCAAAGTG
AAAAGACGATCTTTTTACAACAATGTACAAATTCcgtgggaaaaaaattt
tcagaaaatttgttgATGATTCTTTGAATGGACAAAGAGAATTGCTGTGA
CCGCCTAAttcatttgatttaaaaaactaGTGTGATTAGTTTAACATAAT
AGCCTGTCATTATGCGAGATTGAtaataaattgacaaaaatggTCGTGGT
GAGCTAATCTAGAACAGGAAAACAGTTTTTTAGAAAATGCATGAAAGATC
AGGAAGCTCCTACCACAGATTACTGTGTAGACTGATTGTCAATTCATTCT
AATCTGCATTAGAAAATATAGGTCAGGGGTATAAATCTCCCATTTcagtg
aaagaaaaacaaatgtaaaaaataaaacgtaaaaacacacATAGGGAAAA
TCATACTATTTCCAAAAGCTTTAAAAGTATTAAAAAGCCCTTAATATTTA
CAGTATCTACAggaaatagttttgaaatgatcaacaaaaaaagtaaattg
cTATTAAAAATATAATCGAACCAATCTTATCACGAACCCTTTTAACCTTT
TTGAGGAAGATTCTGGAGATTTTGGACTGATATTCATCAAAAGTGAGGGA
ATTAATTCCATGTGAATTCCAAAATTTATCCAAACTCCTGCTgggatgaa
aaatgtttcataaAAAGAGTGAAAAAAGAATACAATGAACATACAAACAT
AATATTGAATTCAAAAGGGGTCCTTGATAAAATAATATTAGAACAAAGAG
ACAAGATCTAACGTTATATTTCCCTATCTGATGAATTTGGTTTGAAAACT
TCACCTGCCTTCATTATAACTTGAAAATCTTTCCTTTATGTTCAAGACTT
ATTAAATGCCATGAAAACTCATCTCATATTAGCTAACGACAGATGgaaat
aatttcaaacaaaaaagcaTGTGCTGATTTTCACAATATTAGacagaaat
ttgagaaaaactcattaaaaaatttcaaaacaaaaccatCACTTTATaaa
ctttaaagtttgaaaaagaaaatttaatttcataaaaCTTACATTTACAA
AGACcctttttgccttaaaaataagacttttaaAAAACCCACCCACATAA
AACCAGACCCACGTAAGAACTTCACCGCTTAAAAAGACTATTACTGCGTC
TCACACCAACACCATGATGTGGGTCCGCATCTGGGGCATCCAGCGAAGAC
CCAGAGCCAGAATATTTACTTGTTTTACTTTTAGTAGATTGTACTTTCAT
GCTTTGTGATTTATCTCTTGATTTCATATTGTTCACGCTAGTGACATGTT
TAAACATACACGGTTGCGATATTTcacttttcttgattttcttagATTGT
TTTCGTGATTTATTAGAGACAGGAGAATCAGCACGAACACCCTCTTTAGG
GATATTGTCTAAAACATCTTTTAAAAAACCGCAAGCACTCTCGTCTGAGG
GGAATCTTATTCCAGCCATTTTGTTATCAACTCCATCTGAAATCAAGTTA
AATGTGTGAAAGTTTTTCTGTGATGCTTTATATTCTGATTTAGGTAATAT
AGATTCTCTCCAAATAGCGAAACCTGAATCGGGATCTGCAATGCATAACT
GACAATTGACAACCTCACAATCTGAATTATGAGATACAATTAATCCAGGT
GCTCCTCTTTTACAACAATTCCATGTTTCATCATCTTTAGTAGATTGAGT
ATACAATGTTGCGATTACAGGTGAAATAATAACACTATTTGTTAGTGAGG
ACAATGCTAGTTTTATCTTGAATAGTTCTTTATCTTTCAGTTTGACACTC
CCTTCGATAGATTTTCTGTCATCCATATTATTTAGTATCATTcataaaat
tcttttatttgtcttattaaaatgattttatctgaaaaataataaaaaag
tcaACATTGATCAAAATCAACCAAGTAAATCTTACAATAATATTTAAAGT
TTGTCATCTTGGTTTGAGATAAGATTTCACCTCCCAGATAAAAATTCCAT
GGAGTTTTCAGGGAT Coding sequence (CDS) from alignment at scaffold_313:194667..197531 >TCONS_00058790 ID=TCONS_00058790|Name=TCONS_00058790|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_313:194667..197531 (Clytia hemisphaerica)
TCACCGCTTAAAAAGACTATTACTGCGTCTCACACCAACACCATGATGTG
GGTCCGCATCTGGGGCATCCAGCGAAGACCCAGAGCCAGAATATTTACTT
GTTTTACTTTTAGTAGATTGTACTTTCATGCTTTGTGATTTATCTCTTGA
TTTCATATTGTTCACGCTAGTGACATGTTTAAACATACACGGTTGCGATA
TTTcacttttcttgattttcttagATTGTTTTCGTGATTTATTAGAGACA
GGAGAATCAGCACGAACACCCTCTTTAGGGATATTGTCTAAAACATCTTT
TAAAAAACCGCAAGCACTCTCGTCTGAGGGGAATCTTATTCCAGCCATTT
TGTTATCAACTCCATCTGAAATCAAGTTAAATGTGTGAAAGTTTTTCTGT
GATGCTTTATATTCTGATTTAGGTAATATAGATTCTCTCCAAATAGCGAA
ACCTGAATCGGGATCTGCAATGCATAACTGACAATTGACAACCTCACAAT
CTGAATTATGAGATACAATTAATCCAGGTGCTCCTCTTTTACAACAATTC
CATGTTTCATCATCTTTAGTAGATTGAGTATACAATGTTGCGATTACAGG
TGAAATAATAACACTATTTGTTAGTGAGGACAATGCTAGTTTTATCTTGA
ATAGTTCTTTATCTTTCAGTTTGACACTCCCTTCGATAGATTTTCTGTCA
TCCATATTATTTAGTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058790-exon-scaffold_313-1491911889:194667..197531 | TCONS_00058790-exon-scaffold_313-1491911889:194667..197531 | Clytia hemisphaerica | exon |
| TCONS_00058790-exon-scaffold_313-1510915933:194667..197531 | TCONS_00058790-exon-scaffold_313-1510915933:194667..197531 | Clytia hemisphaerica | exon |
| TCONS_00058790-exon-scaffold_313-1575043694:194667..197531 | TCONS_00058790-exon-scaffold_313-1575043694:194667..197531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:194667..197531 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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