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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058799 ID=TCONS_00058799|Name=TCONS_00058799|organism=Clytia hemisphaerica|type=transcript|length=828bp CATTATGGCTGTTTTCTCATATTTACCAAATAAAATGAACACACTGTTAA GAAATGTGATGTATGAGCAAGTTGTGTATGATATTAGCCTGATTTCCGAA CAACTCGAGCTATCACAGACTGAACTGGATCTTGAAAGTGATGTTCAACT TTTATCCGATGTGattaattattttcaatgggaAGATTTGACGTTGCTTT ATATCGGGATCGTTGGAGAGGAACACCCTTATCATCCTTACTTTGTGGAA ACATTGGAAacttttaaaacgtttaaacTTTGTGTCAGCCATTATGAGAT TTCACCCTATGAAATTGACAAGTTTATCACTAAGAAATGGCTTCAAAATA TGAGAGGCTCAGCTATAATTCTCTTTGGCGTAGACAAGTACCTGACCGTT GCATTGGacttttttggatatttttacCAAGAAATCAAATTTCCTTTACT TGTCCATGATGCTGAGAATTTCGATGCTTATTATAAAGCAActttcatca aaatctttgatcaccTGCGCCATGACATTCGTGGTGATTATCTTGGAGTT CGAAAGAGACTTCCGGTTGATGTACAAGCCCGTATACAAGCGTACCCGAA TCATATCAATCacaaattgactttgattttatggAATTTTTATTCAGCTC TTTCTCGCTTGAGACGTTATCGTAATAGACTAAAATCCGATTATCGTGAT TTCTTCCGAATTCGAATCCGAATGAGAGAATTATACCGATCAGGAATTAT ACAAGGAAAGACCATTATTAAAATTAAACATGATGTCTACGATCGACGAT TTGCCGTCGATATTGATTCACAGGATCG Run BLAST on NCBI protein sequence of TCONS_00058799-protein >TCONS_00058799-protein ID=TCONS_00058799-protein|Name=TCONS_00058799-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
IMAVFSYLPNKMNTLLRNVMYEQVVYDISLISEQLELSQTELDLESDVQL LSDVINYFQWEDLTLLYIGIVGEEHPYHPYFVETLETFKTFKLCVSHYEI SPYEIDKFITKKWLQNMRGSAIILFGVDKYLTVALDFFGYFYQEIKFPLL VHDAENFDAYYKATFIKIFDHLRHDIRGDYLGVRKRLPVDVQARIQAYPN HINHKLTLILWNFYSALSRLRRYRNRLKSDYRDFFRIRIRMRELYRSGII QGKTIIKIKHDVYDRRFAVDIDSQD Run BLAST on NCBI transcript from alignment at scaffold_313:451496..452323 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058799 ID=TCONS_00058799|Name=TCONS_00058799|organism=Clytia hemisphaerica|type=transcript|length=828bp|location=Sequence derived from alignment at scaffold_313:451496..452323 (Clytia hemisphaerica) CGATCCTGTGAATCAATATCGACGGCAAATCGTCGATCGTAGACATCATG
TTTAATTTTAATAATGGTCTTTCCTTGTATAATTCCTGATCGGTATAATT
CTCTCATTCGGATTCGAATTCGGAAGAAATCACGATAATCGGATTTTAGT
CTATTACGATAACGTCTCAAGCGAGAAAGAGCTGAATAAAAATTccataa
aatcaaagtcaatttgtGATTGATATGATTCGGGTACGCTTGTATACGGG
CTTGTACATCAACCGGAAGTCTCTTTCGAACTCCAAGATAATCACCACGA
ATGTCATGGCGCAggtgatcaaagattttgatgaaagTTGCTTTATAATA
AGCATCGAAATTCTCAGCATCATGGACAAGTAAAGGAAATTTGATTTCTT
GgtaaaaatatccaaaaaagtCCAATGCAACGGTCAGGTACTTGTCTACG
CCAAAGAGAATTATAGCTGAGCCTCTCATATTTTGAAGCCATTTCTTAGT
GATAAACTTGTCAATTTCATAGGGTGAAATCTCATAATGGCTGACACAAA
gtttaaacgttttaaaagtTTCCAATGTTTCCACAAAGTAAGGATGATAA
GGGTGTTCCTCTCCAACGATCCCGATATAAAGCAACGTCAAATCTtccca
ttgaaaataattaatCACATCGGATAAAAGTTGAACATCACTTTCAAGAT
CCAGTTCAGTCTGTGATAGCTCGAGTTGTTCGGAAATCAGGCTAATATCA
TACACAACTTGCTCATACATCACATTTCTTAACAGTGTGTTCATTTTATT
TGGTAAATATGAGAAAACAGCCATAATG Coding sequence (CDS) from alignment at scaffold_313:451496..452323 >TCONS_00058799 ID=TCONS_00058799|Name=TCONS_00058799|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_313:451496..452323 (Clytia hemisphaerica) ATCCTGTGAATCAATATCGACGGCAAATCGTCGATCGTAGACATCATGTT TAATTTTAATAATGGTCTTTCCTTGTATAATTCCTGATCGGTATAATTCT CTCATTCGGATTCGAATTCGGAAGAAATCACGATAATCGGATTTTAGTCT ATTACGATAACGTCTCAAGCGAGAAAGAGCTGAATAAAAATTccataaaa tcaaagtcaatttgtGATTGATATGATTCGGGTACGCTTGTATACGGGCT TGTACATCAACCGGAAGTCTCTTTCGAACTCCAAGATAATCACCACGAAT GTCATGGCGCAggtgatcaaagattttgatgaaagTTGCTTTATAATAAG CATCGAAATTCTCAGCATCATGGACAAGTAAAGGAAATTTGATTTCTTGg taaaaatatccaaaaaagtCCAATGCAACGGTCAGGTACTTGTCTACGCC AAAGAGAATTATAGCTGAGCCTCTCATATTTTGAAGCCATTTCTTAGTGA TAAACTTGTCAATTTCATAGGGTGAAATCTCATAATGGCTGACACAAAgt ttaaacgttttaaaagtTTCCAATGTTTCCACAAAGTAAGGATGATAAGG GTGTTCCTCTCCAACGATCCCGATATAAAGCAACGTCAAATCTtcccatt gaaaataattaatCACATCGGATAAAAGTTGAACATCACTTTCAAGATCC AGTTCAGTCTGTGATAGCTCGAGTTGTTCGGAAATCAGGCTAATATCATA CACAACTTGCTCATACATCACATTTCTTAACAGTGTGTTCATTTTATTTG GTAAATATGAGAAAACAGCCATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058799-exon-scaffold_313-1491911889:451496..452323 | TCONS_00058799-exon-scaffold_313-1491911889:451496..452323 | Clytia hemisphaerica | exon |
TCONS_00058799-exon-scaffold_313-1510915933:451496..452323 | TCONS_00058799-exon-scaffold_313-1510915933:451496..452323 | Clytia hemisphaerica | exon |
TCONS_00058799-exon-scaffold_313-1575043694:451496..452323 | TCONS_00058799-exon-scaffold_313-1575043694:451496..452323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_313 | supercontig | scaffold_313:451496..452323 . |
Blast
The following BLAST results are available for this feature:
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