TCONS_00058829 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058829
Unique Name	TCONS_00058829
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	787

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_314:396655..400460+

transcript sequence

>TCONS_00058829 ID=TCONS_00058829|Name=TCONS_00058829|organism=Clytia hemisphaerica|type=transcript|length=787bp
GTgagaacaaaaataattttcacccaaaaaaaatGAACGGTTTGAGAAAA
ACAAAGACAGGCAATCAAGTTCATTCCCGCTCCCTTGGATTGGCAGACAG
TGGATATGCAATCATCATAGATGTTCGATCATCAAACGGATTATCAATAG
AAACCATTGTAAAATCACTCGAAGAATTTTTAACAATGGTCAACCTATTG
GCAGGACCACCCAAAATATCAATGCTTGGCATCTATTGCATTGGTGATAT
CGACCTCAAATGTATAATTCCTTTAACCCACACCAACAATGGAATGCAAA
GTTTGATCTTGGCTTTACCTGGAATCCTACAATTTACAAAATACCAGAGC
AATATCAACtctaaaggtttttttattgAAAACTTGGAAATGGTTTTTGC
AGAGATCAACAAACAGTTCCAACAGAAGCATGAATACAACAATAACAAGA
ATGTCAAAGCAGCAAAACAGTTGAACATCTGCTTACTGACAGCACAAGGA
ATAACGACAAGCATTGAACGCCACATTGCAAGAATCATCAAAGAAACAAA
TCTTGAAATAATTAAGAAAGTTCAAGTGGCTAGAATGAATACAACACTAC
ACCCAGGTTCAGATGAGTTACAAAGCAGTGATGAAATGACATGTTCAAAT
AACAGTGAGTTGGATGGAATATTATGTGGCTACGTTGAAACGCGTTATCT
GGAAAATGATAAAGTGAATTTGGAGCAGTATTTTCGTTCTTGGTTAAAAG
ATAGTTCTGGATCTGATGAAGTACATCTAACAATCAC

Run BLAST on NCBI

transcript from alignment at scaffold_314:396655..400460+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058829 ID=TCONS_00058829|Name=TCONS_00058829|organism=Clytia hemisphaerica|type=transcript|length=3806bp|location=Sequence derived from alignment at scaffold_314:396655..400460+ (Clytia hemisphaerica)
GTgagaacaaaaataattttcacccaaaaaaaatGAACGGTTTGAGAAAA
ACAAAGACAGGTATTTAAGCtatgtaaatgttttttaatttcataatATG
CGATCGGAACCTCAAATAATCACTGATTGTTCtttatcaaaatctttttt
gatggacATGAAAAGAGAGCCATCAAGAACCATTTTTGTTATGATCTTTG
TTATGACTCAACTGTGGTTTTAACCCACAACCTCGCTCGTCTCACGAAGG
AGCACCAGTTGTATCTAATTGTTATTTATCCATCGAAACTACTCCAATCG
TTTGATTCTATTTTTTCAGGCAATCAAGTTCATTCCCGCTCCCTTGGATT
GGCAGACAGTGGTATGGAATGTTTTCTTAGTGAGAATTTCAAACTGCATC
CGTCATTCATTCATATTACCTTTAGTGACTGTTCCTTAAATTATTTCAAC
CCAGAGCAATTCATGGATGACAAAGCTAGTTGGACCAGGTTCTCTTGAAA
ACTACACATGATTCtcaataattcgaacttattcagatatttgaaaaaat
attgcaaaagtaATTATTAAAGTGCTCTAACTATCttatcttatttttaa
aatgataatATGATTGCAAACATTTTCCTAGGATATGCAATCATCATAGA
TGTTCGATCATCAAACGGATTATCAATAGAAACCATTGTAAAATCACTCG
AAGAATTTTTAACAATGGTCAACCTATTGGCAGGACCACCCAAAATATCA
ATGCTTGGCATCTATTGCATTGGTGATATCGACCTCAAAGTTTGATTTAT
TctcacttttattttttgtaaaactgatttttgaactttttgttaCTATA
AAGGAGAGTTTCGAGAAGTATGGCGAATAATGTGGATTTTATAGAAAGGA
TCATTTATTGGCAAAAGCAGTATCTCCTTTCTTCATTGTAGTTTCTAGAT
GAGAAATGAGCAGGAAATGAGCCAAAAAAGAAATGTGTTACCTTTTACCT
TTCAGTGTATAATTCCTTTAACCCACACCAACAATGGAATGCAAAGTTTG
ATCTTGGCTTTACCTGGAATCCTACAATTTACAAAATACCAGAGCAATAT
CAACtctaaaggtttttttattgGTAAGTCATGACATAAACAAGAGGTAT
TTTTCATGACCTTTACAAATCAGAATATAAATTTTAAGCTTTCGTATGTA
AACAAGTTGTGTTGTGTTGTTCCAATCGGAAGGTAATGAAAGTTACCCTT
AACTTATATAAGTAACCCAATTGAGAATATCatattgaacaaaaatactg
gcgaaatatttaaaattataGATTCcgtttttgtccccgctgaaaataat
taaattaacaaattctcactgcaaaatattttgtcattttttcatCCTCA
CTGAATTATATGActtcaaaacaatggaattcatgTCTCCATCCATAAAA
AAAACGGGATTATCAATCCCCGTCGAGtttttagtccgttatttttacca
aaACTAAAAAACTGGTCTGTGAGACTACACAGTTCACGATCAATACAAAG
TGAGATTTCTTTCTATCTGATTTCGTACTGACTGTACAGTATTGCGAAAT
AGTTTATGGGATCGATTAGTACACactttatataaaggtcagtgattgtA
CATTACCTTTATTCTAGAAAACTTGGAAATGGTTTTTGCAGAGATCAACA
AACAGTTCCAACAGAAGCATGAATACAACAATAACAAGGTATATATATGA
GAAAATTTTGCCGATTGGATTTggtttttagaaaaagtaatgattTGATG
AATAACTTGTTAAATGAGATGCGTTTCAGTTTTCTTAGAATTTTGTGAAA
TGCAAGGCATAGTTAAATCAACTGTGCTTCTAAAAAATTAAAGGATTATT
TCAAGTTCCCGTAAAGGAGGATCCCTCTTAATATACTCTCTatgattcga
atctctctgtaattcgaacaaataagattccccgttctGTATTAATTCTT
TTAGAATGTCAAAGCAGCAAAACAGTTGAACATCTGCTTACTGACAGCAC
AAGGAATAACGACAAGCATTGAACGCCACATTGCAAGAATCATCAAAGAA
ACAAATCTTGAAATAATTAAGGTACAATATTGCGCGTTATACGTGATTCA
AACAGATTCAAAGGAGAAAAGTCATTGTTACCCGTTTTTAGATCATTTTT
AGCTAAAAGTCTTGGATTTAGTTTAAAGAGCCTGTAAATTTTATAACTAC
GATATCTTAAAAAAGTTAAGACTGTCTTCTTAAGAATTTAAACCAGAGTA
TACATAGCCGAATAGATAGTACGTTGTCGTTTTTTCATGAATAGAAAGTT
CAAGTGGCTAGAATGAATACAACACTACACCCAGGTTCAGATGAGTTACA
AAGCAGTGATGAAATGACATGTAAGAGTAAAAGTTgaataattttcattc
agtaatTTATCATTGGTTACAAGGAGTGTTTAGGGTTGTGATTTGACAGG
CATTTCgaaaataaacacttaaaaAGTCTTACGGAGggactaaaatgtcg
aaaattttTAGAACTTATTACCCTGAAGGGATTCAGTtccttatttttgt
tttttttgtaaccTTTTGTCACAATTCTGACGGTGTCCATTCTGTATAAT
TGCTCCCCctgagaaaatattcaaaaggttATACTCGAATCGTTTCAGGT
TCAAATAACAGTGAGTTGGATGGAATATTATGTGGCTACGTTGAAACGCG
TTATCTGGAAAATGGTACAACCCTCTTTTTTTCTATATCTACCTTCAGTT
ATTACGGTAAATTCCCGAACAGATATCAGAAATGTTCCTACCAAGCTATG
GACGGAGGAGTTAGTTCTCTATATTTAAATTCTTTCTAagtaaaaatact
ttaaaatttGATACACTACTTAAAAGTCAATcatttaaaatgttttcaaa
attttgtaaatgGTTACAATatgtaccgggtgcaccaaaaaagtatacag
gtatgtcgagatattgtgagcttcaggattttattttttttcattctttt
tttatcgtatagaggatgctctaacttgaattttgagctatcatacttta
ggtttgaaaaaatagttcgaaaattatttttttttaactgactttttttt
aatgtcgaaatttcaaaagataccaaaaaatgcaactttgttcatcaaaa
ctcgttacagaatttaaaaatatagTAAAACAAGCTATATCCatgtggga
taatatttttggaaaaccggaaaaaaagttttggaaatctccagGACAGg
caggttttgatgttatgtgtgtgctatgtgagaaaactttTAGATCAGca
ttcctcgactagttgctcaaagaacttgggtctgcattgagtttgctcgt
gttggaaatgttcatgacgtgcaaataagatgAAGAAACTGTTAGCAAAA
TATAGATaagaaaagaagaattaaaaaaacaataaaattgtgttttttgt
tattttgtcttatttatagcaatgtcaaatttaatgtatgatcaggtatg
atagctcaaaattcaagttagagcatcctctatacaataaaaaaagaatg
aacaaaaaaaataaatcctgaagctcacagtatctcgacaaacctgtata
ctttttttggtgcacccggtacaaCAGATGATTCATAACACTCATAGTTA
TTTTCTAGAAAAACAATTTAACTTTAGATAAAGTGAATTTGGAGCAGTAT
TTTCGTTCTTGGTTAAAAGATAGTTCTGGATCTGATGAAGTACATCTAAC
AATCAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037067	XLOC_037067	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_314	supercontig	scaffold_314:396655..400460 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13999	0.938432	1.49575	1.75567	0.937897	0.630784	1.72578	0.766256	0.358995	1.30052	0.379579	0.753063	0.683037	0	0.555662	1.69308	1.12828	1.04807	0.834147	0.307592	0.771503	0.45581	0.708439	1.16473	9.71924	8.74314	0.501353	0.721038	0.684259	0.549368

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00058829 vs. Swiss-Prot (Human)

BLAST of TCONS_00058829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00058829 (transcript) - C. hemisphaerica