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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058859 ID=TCONS_00058859|Name=TCONS_00058859|organism=Clytia hemisphaerica|type=transcript|length=705bp
CGAAAATATCTACGTTATATACCTTTTAAGAGCATCGCGGGCAGACTCAG
CGCTCATATATAGTACATGTAACAGACTACGAAAACAAACTCATGTGCTC
AAAAATATCATGGCGTCGAACGAGAGCAGACACAAGAAAGAAcctaaaat
tcactttttgaaatTAGCATTTAAAGATGCAAAGCAAATGTCTCAGGGAA
AGCATTCGTGCTTGGAAGAGGTGAAGCACACCATGAACATTTCATTAGCT
CCAAAATTTATTGGAAACTTGAAATTGGGGTTGAAAGAAGAAAtgaataa
atttctttttgtgtACCAAACGAAGCTAAATGGTGTCCCACTTGCTTATG
ATAGAATCCAGATCACCAAATCAAAAATCATTGATGACCAAGAATTCCTG
AATCTTGAAATATGTGTCAATTTTATAGTATTTCAACCAGAAATATCCAA
AATTCTACGAGGCTGTGTTAATAAATTAGGTGATCATTATTATGGGTGTT
TGTTTCATAATTGCATTAATGGAATGGCTTTCAAACCAAATCCAAGCAAA
TTACCAACAGAGGAGATAAAGAATTACTTCAAGAATATAAAGTTGGGAGA
TGAAATcttaataaaaatttcaaagattcaAACAGAGCATGAAGTGCTAT
TTGTAAAAGGTGGTATATGGACTGACAAACGATCCAGGAAATTATCAAGG
AGCGN Run BLAST on NCBI transcript from alignment at scaffold_314:6731..14694- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058859 ID=TCONS_00058859|Name=TCONS_00058859|organism=Clytia hemisphaerica|type=transcript|length=7964bp|location=Sequence derived from alignment at scaffold_314:6731..14694- (Clytia hemisphaerica)
CGAAAATATCTACGTTATATACCTTTTAAGAGCATCGCGGGCAGACTCAG
CGCTCATATATAGTACATGTAACAGACTACGAAAACAAACTCATGTGCTC
AAAAATATCATGGCGTCGAACGAGAGCAGACACAAGAAAGAACCTAAAAT
TCACTTTTTGAAATTAGCATTTAAAGATGCAAAGCAAATGTCTCAGGGAA
AGCATTCGTGCTTGGAAGAGGTGAAGCACACCATGAACATTTCATTAGCT
CCAAAATTTATTGGAAACTTGAAATTGGGGTTGAAAGAAGAAATGAATAA
ATTTCTTTTTGTGTACCAAACGAAGCTAAATGGTGTCCCACTTGCTTATG
ATAGAATCCAGATCACCAAATCAAAAATCATTGATGACCAAGAATTCCTG
AATCTTGAAATATGTGTCAATTTTATAGTATTTCAACCAGAAATATCCAA
AATTCTACGAGGCTGTGTTAATAAATTAGGTATAAACTTACTTTTCAAAT
TTTGTTTTTCTCAAAATTTTAAACTTTATATTTTACTTCACAGATAATTT
CAATTTTTAACTGGACCCCAAACCTTCTGCAACTCAACCAAATAAAAATA
GAAGTAGATAAATTAGCTTGTCTGTATAGACCTTTTTTCAAAGAGGCCAC
CCTGTTGAATAATTATGTAGTCCAGCAGAAAAACAATGATAAAACCATGC
ATAATTATTACAATATGCATGATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGGCTAAGAAATATTTTGGCCTTTAAAGAGCCTGGGGGCTAAAATTACC
AAAATATTTGGGGGGACCTAGATTGTTGGGGGGAACCTAGATAATCTGAC
TGAGACTCTGGGGGCTGTTCAGCTAATTCTAAAAGATGTCTTATCGTACT
ATTAAATCGAATATAAAAAGCAAAAGATTGGTTAACATAAATATTAATAC
AAGTAAAATTTAGTTTTCATTTATCAGTACCGTACTCGCATATATTTTTT
ATTGACTTCTCTCTACACGTCTCTCTACCTACAAGGGCGAGAGGAAAATG
TTTTTGTTTTTTCCCCAAGTGTTAGGGGACCTAGCTAAATTGTTGGGGGG
ACCTTACTTTGTTGGGGGGGGAGCTAGAAACCTGGCTGAAGCTATGTCAA
TCTTCTAATCTAAATCTTAACAAAAACTCTTTATTTGACTAGAGGAAGAA
TTTTCTTGTCATTAATTTGATGCTAAAGTTTGTCATTATTTAACATAATA
TTGTCAGTTAGTGAAAGTATAGCCTGGGAATCCAAGCTCAAATTATAGAA
AAAACAAAAAATACCCCACCTCACAAAGTTCTAAGATTATAGAGCTTGGT
GCAAGTAGATTAGTCTGACACANCCTCACAAAGTTCTAAGATTATAGAGC
TTGGTGCAAGTAGATAAGTCTGACACATAATGTTATAACAAGACGATGTC
AATCGAACCAATCGAACGCCGAATCAATTGAACGCAATTGAACACAATCG
AATAATTGCAATCGAATATTACCCAGGATTTGCCGTTCGATTGCTTCAAT
TACGTTTGATTGTATTCGAGTGCGTTCGATTGTATTCGATTATGTTCGAC
TGATTCAATAGTACTAGATTTTATTCACTTTCGTACGGGACTTAAGCGCT
CGGCCGCCCACGCTAAAAAGCTCTAACGGGGTAATCCAATTTAATTTAAT
GGCAATCAAACTCATCGAACATAATCGAACGAAATCGAATGTAATTGACA
ATCAATCGAACCAATTGAATATAGTCAACTATCAATCGAACCAATCTAAC
CTTACTCGAACGCAATCGAACACAATCAAATATTACCCAGGATTCGGCCG
TTCGATTAAGATTCGATTACGTTCGTCAATCGAATCGCAATTATTCGATC
GCGTTCGATTACGTTCGATTGGTTCGATTGCGATTTTTGTTCGAAGTTGT
TCGATTGACACCGTCTGGTTATAAACAGTCTGTGTGTGAACCCTTGTTGA
CAGACTTGCTGAACTTTGGAAACCCAGGCAAACACACATAATCAACTCTA
AAAGACTTTCAAAACTACTAAAAACCACATCAAAACATCAGCCACATGTT
TATTTAGACTTCCAGCCAACAGCCATTTTGTTTCGAAATGAATCTATGTT
TTCTTTTTCATTTGTTTTCCTTTTTTTCTGCAGAGTCAGCTTTTTCTTTT
TGACTTGACGTCAAATACAAAACTGAACAGTTGTCGTCTGAAAAATGCAC
AAAGATGGCGAAAAGATACCCTACAATGCAGGAAGTGCCACCGTTTAGTC
CATTATCTTTGTACAGAACTGCCACTTTACCAGATCCAGATATGCTTGTC
ATACAAATCAAGAAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATGTCC
ACACAAGAGAAAGAGATACCAAATGTATAATGTCTTCTTTTGAAATTCTA
ATCAACAAACGTCAATAGTACGACTTCATTATTACACCCGGGGGGGGAGG
CAATCAAGGTAAATGGCCTACCAGACGTTCGGCCCTTAAGGGTAGGTTTT
TCATAGTTCAGCTAGTGCACTGTAAGGGTAGGAAATTACAAAACTGCACT
GAACTGCACTCTCAGGGTAGGAAATTGTGATAAAAGGCCAATTTATTGGT
AAAATTGGCACAAAATTAGTCAATTTTAGAGGAAATATTCCACATTTTCT
TGGAAAATTTTGAAAAAGTGCACTGTAAGGGTATCATTTTTCATGGAAAT
TCACTGCACTGTAAGGGTCTGATTTTAGAAGCCAAATTTTGGCCCGAACG
TATGGTTGTTTTCAGATCGAGTGCCCGCGTTATTACACAAACAAAATACC
AAAATGTACAAAGAAAAATTTCTTAGTTCTTGGAAAAAGTTATTAGGTTA
GCCCCCAGTCAACAGACCTAAACAAATAGCCCCCCCCCCTGAGTAAGTAG
CCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNACCGCGAAAAAAACTTTATTTAAAAAAG
ATCGTTGTAAAAAGTACGAGCGGTTTATAGAGGCCCATGTGTCTTCACGG
TGGCCTGCAAACCTGTAAAGCTTTATTATTATTTTTCCATAAATTATGCG
CGCGCATCGAAATTATCAAAATGCGTGCTAAAGTACTGCTAAGTAATACT
GGCCAATCAGGCCGAACCTGCATTNAAAATTATCAAAATGCGTGCAAAAG
TACTGCTAAGTAATACGCCGAAAGCTGGCCAATCAGGCCGAACCTGCATT
GCAGAGAAAAATCTCCCTGCAGGCGAGTTACCTGCGCCAAGCATTAAACA
AGCAGCAAAAATATCATAAACTAGACTGTGAACAAAGTTTAACGCTTGGA
TTCCCAGGCTAGTGAAGGTACTTTAATTTTTGAAACGTCTTTACGTCACA
TAGATCGATTTGTGAAACGTCTTTACAGCACATAGAACGAAAGAAAATAG
CAAAAGAACAAAGGAATTATTCATAGCCACCATTTCGCAACCGGAATTGT
GATTTTGCGGAAATGGGAACCCTCATATCAAATAAAGCATCTGCTGAAAA
TTTTGTTCTCCCCCAAAAATGCGAAAATGAAAAATGAAGAAGCTTTTGTT
TTCTGATCGTCTTTTTAATCTGCCATAAAGTGTTATAAAATTCCTTAAAG
AAAGACACATTCTCCTACGAAGTGGCTTCATATAAATGATGCTGTTAAAA
AGTATGTCATTTTATCTTAACAATTTCCTAAACTACGTCACAACCACAGA
GCGCTGGCTTTTAGTTTTATGACTTGTTCTCACTCGTTTAGTTTTCGTAA
TAAAAAGAAAGACGTTATTGTAAACTTTGAACATGCTTAAAATCGAGGTA
CTTCCACTAACTGATTGTGATAAATAAGGAAAGGTCTCTACTGTTAGTTG
GTCTACCGACACCTGCCCTGCCCTTGTGATGTGATGACCTTGACTGTTTA
TGATTAATAGGATTGGGGATTTTAACATCAGACCAACTTTTGATATTGAG
GGTCAGAGAATATAGTATTGAACGCAAAGTTGCCAAACTTCGGAGGCTGC
ATGTTAATTGTTAATTTACTTAAAGCCCATTTTGTGTATGATGAAAACAA
CCACCAAAAAAATCTCAACATGAATTCTGAATTTTTTGAAACCGTAAATT
GGGGAAGTTGAAAAATCAGTGAACAATTTTTTTCACAATCAGAAGATTGG
GGAAACGTTTTTAAAAGTTGAAAGTTGGAAAATTAGAAAACTCAGGAAAA
GTTTTGCTAAAATTTACAATTTGAACCAAAGCCCTTCTCTTAATCATGAC
TTTATGTTGAGTAATTAAAAAAACTCTTGATCAAAACAAGAACAAGAAAA
TGTTTTTAGTATATACAAACTTTTACTAAAACATGTATATACAGGGAGGG
GATGAATGGTAAAATAGGCTAAGATAGGTGCTGGGTAAGTTCAGTTGGTA
CGGGTTTGTTAATTATGACCTTTCCAAGTTTTTCTGAAGGTAACAATGAC
AACAAAAAGTCAAAATAGTCTTTTTAAGGGTCAGAATTTCCGCTTTTTGG
GTCTCTTTTAAGAGTTTGAAAGCCTACCTTGGTTGGTTTCAGCTATTTGT
TTCCTCACCAAATCCAAGGGTGACCGCATAGGACATCCTTCAAAACTAGT
GATACCCCCACCCATAGTTTATTTTCTGTAATTCGTTTCTTATTGACAGT
AATGATCCAAAAAGTCTCTTTTTATGTAGATTTCAAAAACGGTTAAAAGT
AGGGGTTAAAAATGAAGTCAATGAGAAGAAAATGCAAAACTTGATGATTT
TTTCTCCTATTTTGGCCTGCGATTATAAAAAACCTAAAAAATGCGATAAA
AAATTTCTAAAGCGAGGTTAAGCTCTATTTTTTTTGCTTTTTGCTACAAA
ATACCATAGCTTCCCATAAAAATAGGTTTTAGAGAGATTTGAAGACATTC
ATTTTTTGACATTTTTAAAATTTTTGGGTACGAGCTTTTTGCTTATAGCT
TTTAGTTTGAATTGGTTGGATTCAGCTATTTGTTTCCTCATCAAATCCAA
GGGCGACCGCACAGGATATCCTTCAAAACTAGTGATACCCACCCATAGTT
TATTTTCTGTAAGTCGTTTCTTATTGACAGTAATGGTCCCAAAAGTCTCT
TTTAGTTTGAATGGTTTTTATTCTAGATGATTTAATAAAGCTCTCATATG
CAAATTTACATTATCTTTGTTTTAGGTGATCATTATTATGGGTGTTTGTT
TCATAATTGCATTAATGGAATGGCTTTCAAACCAAATCCAAGCAAATTAC
CAACAGAGGAGATAAAGAATTACTTCAAGAATATAAAGTTGGGAGATGAA
ATCTTAATAAAAATTTCAAAGATTCAAACAGAGCATGAAGTGCTATTTGT
AAAAGGTGGTATATGGACTGACAAACGATCCAGGTAAATTAGCCTCCTAA
ATATCTTTAAAAGGTGTGTAACCCTTAGTAGATTGCAAACTGCTCATCTT
TACGAGTTTATTTTGACGGCTAACCGTTTAAGAAAGAAGTTTTCGAAACC
ATTGCTTTATCCGCTGTCTGACACTTAAATTTGTTTTTTTATCAGTTGTC
AATACCTTGTATCTAGTCCTATGAATTTGAACTTTCTGTATTTCAGGAAA
TTATCAAGGAGCGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058859-exon-scaffold_314-1575043694:14216..14694 | TCONS_00058859-exon-scaffold_314-1575043694:14216..14694 | Clytia hemisphaerica | exon |
| TCONS_00058859-exon-scaffold_314-1575043694:6962..7169 | TCONS_00058859-exon-scaffold_314-1575043694:6962..7169 | Clytia hemisphaerica | exon |
| TCONS_00058859-exon-scaffold_314-1575043694:6731..6748 | TCONS_00058859-exon-scaffold_314-1575043694:6731..6748 | Clytia hemisphaerica | exon |
| TCONS_00058859-exon-scaffold_314-1510915933:14216..14694 | TCONS_00058859-exon-scaffold_314-1510915933:14216..14694 | Clytia hemisphaerica | exon |
| TCONS_00058859-exon-scaffold_314-1510915933:6962..7169 | TCONS_00058859-exon-scaffold_314-1510915933:6962..7169 | Clytia hemisphaerica | exon |
| TCONS_00058859-exon-scaffold_314-1510915933:6731..6748 | TCONS_00058859-exon-scaffold_314-1510915933:6731..6748 | Clytia hemisphaerica | exon |
| TCONS_00058859-exon-scaffold_314-1491911889:14216..14694 | TCONS_00058859-exon-scaffold_314-1491911889:14216..14694 | Clytia hemisphaerica | exon |
| TCONS_00058859-exon-scaffold_314-1491911889:6962..7169 | TCONS_00058859-exon-scaffold_314-1491911889:6962..7169 | Clytia hemisphaerica | exon |
| TCONS_00058859-exon-scaffold_314-1491911889:6731..6748 | TCONS_00058859-exon-scaffold_314-1491911889:6731..6748 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:6731..14694 - |
Blast
BLAST of TCONS_00058859 vs. Swiss-Prot (Human)
Match: RPA43 (DNA-directed RNA polymerase I subunit RPA43 OS=Homo sapiens GN=TWISTNB PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 7.414e-24 Identity = 51/163 (31.29%), Postives = 90/163 (55.21%), Query Frame = 2
Query: 170 FKDAKQMSQGKHSCLEEVKHTMNISLAPKFIGNLKLGLKEEMNKFLFVYQTKLNGVPLAYDRIQITK--SKIIDDQEFLNLEICVNFIVFQPEISKILRGCVNKLGDHYYGCLFHNCINGMAFKPNPSKLPTEEIKNYFKNIKLGDEILIKISKIQTEHEVLF 652
+ A + ++SCL H +I+L+P+++ + G++E+++ L Y L GVP+AYD I++ I DDQ ++L I +F++F PE + L G VNK+ + GCL H C N A P P +L E+ + I +GDE+ ++ ++ ++ +F
Sbjct: 34 YAAACALVNSRYSCLVAGPHQRHIALSPRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGIVNKVSSSHIGCLVHGCFN--ASIPKPEQLSAEQWQTM--EINMGDELEFEVFRLDSDAAGVF 192
The following BLAST results are available for this feature:
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