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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058863 ID=TCONS_00058863|Name=TCONS_00058863|organism=Clytia hemisphaerica|type=transcript|length=834bp
cagagaaagaagaagaaatcgaGAATGCATTGTTGAAAGCCATTGCTGAG
GAAGAACAAGAATTGCAAGgaaaagAAGGAGTGGatcaagaagaagaaga
ggaagaCCTAGATGAAATTGATTTGGACGAAATTTATGCAAAACATGACC
CCTTCTGGTGGTCCtccaaaagtaaacaaaaacaaaatactgGCCACCAA
GCTATCAGTGTGAATGCCTCCCAACCTAGGAAACCGGCTACACGCCGCTG
GCTTCGCATAAAACAGAAAGCTAAGNGCTTTTTGCATGGTGCGCATAAAG
TGGTCACAAAAGCTCAAGAGTACGCGCCACACATCTTGAAAGGGATTAAA
TATGGTGCTATGTTGTTAGGTAAGAAGAAGCGAGAATTAAGGGCATTGGA
AACGAGACAAAAGCATTTGAAGCGTCAAATCCAAATATTAGAAGATgaag
ttatgaaaaagaaaaagtagacAGATTTTCAAGTATTCGACATaatgtat
tttttttgtaaatttttatacCACTTTTTGTAAACTATTGATTGTTTTTC
CCCATGTTTTCTTCTGTGAAAATATATAGATTTCAAATGTGCAAGAGGAT
AAAACTTTCGGGTCCCTTAATATGcagtccccccccccctccacCTATAA
CCAAATAGCAATGTTCAAAATGAAAGGTACTAGAATTAAGGAAGAGTGAA
ATTTGTATATTTTCCTAAGAgttgcagaaaaaaagttgttATTGACAAAA
TATCCCTTAAAATTATAATGGTTTgataaatttatgaaaatgaaaataat
ctaATTCATAATAAggattaaaagaattttttNN Run BLAST on NCBI protein sequence of TCONS_00058863-protein >TCONS_00058863-protein ID=TCONS_00058863-protein|Name=TCONS_00058863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
EKEEEIENALLKAIAEEEQELQGKEGVDQEEEEEDLDEIDLDEIYAKHDP
FWWSSKSKQKQNTGHQAISVNASQPRKPATRRWLRIKQKAKXFLHGAHKV
VTKAQEYAPHILKGIKYGAMLLGKKKRELRALETRQKHLKRQIQILEDEV
MKKKK Run BLAST on NCBI transcript from alignment at scaffold_314:51679..52799- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058863 ID=TCONS_00058863|Name=TCONS_00058863|organism=Clytia hemisphaerica|type=transcript|length=1121bp|location=Sequence derived from alignment at scaffold_314:51679..52799- (Clytia hemisphaerica)
CAGAGAAAGAAGAAGAAATCGAGAATGCATTGTTGAAAGCCATTGCTGAG
GAAGAACAAGAATTGCAAGGTATGTAAAAATATCTTCTTTTACTTATAAA
GTGTGTGTGATACAGGGGTGTATTTAAAAGTGTGTCACATTCATTCGAGA
GGATAAAACTGTCTGGGTTCCAACTAGTAAACTTTGTTTGAAAAAAATCA
CGGAGTAGAGTAATGGGTAGTTTGTCGAAAAAAAAGAACAATTGATTTAT
ATTTGAATTTAATTTTTTCAGGAAAAGAAGGAGTGGATCAAGAAGAAGAA
GAGGAAGACCTAGATGAAATTGATTTGGACGAAATTTATGCAAAACATGA
CCCCTTCTGGTGGTCCTCCAAAAGTAAACAAAAACAAAATACTGGCCACC
AAGCTATCAGTGTGAATGCCTCCCAACCTAGGAAACCGGCTACACGCCGC
TGGCTTCGCATAAAACAGAAAGCTAAGNGGCCACCGAGCTATCCGTGTGA
ATGGCTCCCAACCTAGGAAACCAGCTACACGCCGCTGGCTTCGCATTAAA
CAGAAAGCAAAAAGCTTTTTGCATGGTGCGCATAAAGTGGTCACAAAAGC
TCAAGAGTACGCGCCACACATCTTGAAAGGGATTAAATATGGTGCTATGT
TGTTAGGTAAGAAGAAGCGAGAATTAAGGGCATTGGAAACGAGACAAAAG
CATTTGAAGCGTCAAATCCAAATATTAGAAGATGAAGTTATGAAAAAGAA
AAAGTAGACAGATTTTCAAGTATTCGACATAATGTATTTTTTTTGTAAAT
TTTTATACCACTTTTTGTAAACTATTGATTGTTTTTCCCCATGTTTTCTT
CTGTGAAAATATATAGATTTCAAATGTGCAAGAGGATAAAACTTTCGGGT
CCCTTAATATGCAGTCCCCCCCCCCCTCCACCTATAACCAAATAGCAATG
TTCAAAATGAAAGGTACTAGAATTAAGGAAGAGTGAAATTTGTATATTTT
CCTAAGAGTTGCAGAAAAAAAGTTGTTATTGACAAAATATCCCTTAAAAT
TATAATGGTTTGATAAATTTATGAAAATGAAAATAATCTAATTCATAATA
AGGATTAAAAGAATTTTTTNN Coding sequence (CDS) from alignment at scaffold_314:51679..52799- >TCONS_00058863 ID=TCONS_00058863|Name=TCONS_00058863|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_314:51679..52799- (Clytia hemisphaerica)
CTTTTTGCATGGTGCGCATAAAGTGGTCACAAAAGCTCAAGAGTACGCGC
CACACATCTTGAAAGGGATTAAATATGGTGCTATGTTGTTAGGTAAGAAG
AAGCGAGAATTAAGGGCATTGGAAACGAGACAAAAGCATTTGAAGCGTCA
AATCCAAATATTAGAAGATGAAGTTATGAAAAAGAAAAAGTAGGAAAAGA
AGGAGTGGATCAAGAAGAAGAAGAGGAAGACCTAGATGAAATTGATTTGG
ACGAAATTTATGCAAAACATGACCCCTTCTGGTGGTCCTCCAAAAGTAAA
CAAAAACAAAATACTGGCCACCAAGCTATCAGTGTGAATGCCTCCCAACC
TAGGAAACCGGCTACACGCCGCTGGCTTCGCATAAAACAGAAAGCTAAGN
GGAGAAAGAAGAAGAAATCGAGAATGCATTGTTGAAAGCCATTGCTGAGG
AAGAACAAGAATTGCAAGCTTTTTGCATGGTGCGCATAAAGTGGTCACAA
AAGCTCAAGAGTACGCGCCACACATCTTGAAAGGGATTAAATATGGTGCT
ATGTTGTTAGGTAAGAAGAAGCGAGAATTAAGGGCATTGGAAACGAGACA
AAAGCATTTGAAGCGTCAAATCCAAATATTAGAAGATGAAGTTATGAAAA
AGAAAAAGTAGGAAAAGAAGGAGTGGATCAAGAAGAAGAAGAGGAAGACC
TAGATGAAATTGATTTGGACGAAATTTATGCAAAACATGACCCCTTCTGG
TGGTCCTCCAAAAGTAAACAAAAACAAAATACTGGCCACCAAGCTATCAG
TGTGAATGCCTCCCAACCTAGGAAACCGGCTACACGCCGCTGGCTTCGCA
TAAAACAGAAAGCTAAGNGGAGAAAGAAGAAGAAATCGAGAATGCATTGT
TGAAAGCCATTGCTGAGGAAGAACAAGAATTGCAAGCTTTTTGCATGGTG
CGCATAAAGTGGTCACAAAAGCTCAAGAGTACGCGCCACACATCTTGAAA
GGGATTAAATATGGTGCTATGTTGTTAGGTAAGAAGAAGCGAGAATTAAG
GGCATTGGAAACGAGACAAAAGCATTTGAAGCGTCAAATCCAAATATTAG
AAGATGAAGTTATGAAAAAGAAAAAGTAGGAAAAGAAGGAGTGGATCAAG
AAGAAGAAGAGGAAGACCTAGATGAAATTGATTTGGACGAAATTTATGCA
AAACATGACCCCTTCTGGTGGTCCTCCAAAAGTAAACAAAAACAAAATAC
TGGCCACCAAGCTATCAGTGTGAATGCCTCCCAACCTAGGAAACCGGCTA
CACGCCGCTGGCTTCGCATAAAACAGAAAGCTAAGNGGAGAAAGAAGAAG
AAATCGAGAATGCATTGTTGAAAGCCATTGCTGAGGAAGAACAAGAATTG
CAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058863-exon-scaffold_314-1575043694:52731..52799 | TCONS_00058863-exon-scaffold_314-1575043694:52731..52799 | Clytia hemisphaerica | exon |
| TCONS_00058863-exon-scaffold_314-1575043694:52321..52528 | TCONS_00058863-exon-scaffold_314-1575043694:52321..52528 | Clytia hemisphaerica | exon |
| TCONS_00058863-exon-scaffold_314-1575043694:51679..52235 | TCONS_00058863-exon-scaffold_314-1575043694:51679..52235 | Clytia hemisphaerica | exon |
| TCONS_00058863-exon-scaffold_314-1510915933:52731..52799 | TCONS_00058863-exon-scaffold_314-1510915933:52731..52799 | Clytia hemisphaerica | exon |
| TCONS_00058863-exon-scaffold_314-1510915933:52321..52528 | TCONS_00058863-exon-scaffold_314-1510915933:52321..52528 | Clytia hemisphaerica | exon |
| TCONS_00058863-exon-scaffold_314-1510915933:51679..52235 | TCONS_00058863-exon-scaffold_314-1510915933:51679..52235 | Clytia hemisphaerica | exon |
| TCONS_00058863-exon-scaffold_314-1491911889:52731..52799 | TCONS_00058863-exon-scaffold_314-1491911889:52731..52799 | Clytia hemisphaerica | exon |
| TCONS_00058863-exon-scaffold_314-1491911889:52321..52528 | TCONS_00058863-exon-scaffold_314-1491911889:52321..52528 | Clytia hemisphaerica | exon |
| TCONS_00058863-exon-scaffold_314-1491911889:51679..52235 | TCONS_00058863-exon-scaffold_314-1491911889:51679..52235 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:51679..52799 - |
Blast
The following BLAST results are available for this feature:
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