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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058875 ID=TCONS_00058875|Name=TCONS_00058875|organism=Clytia hemisphaerica|type=transcript|length=1897bp
AGAGAGGAGCTCCGGAAGAAAATTTCGCAATGGACACCAGATGACGTGCG
TAAATGGATCACATCCAACAAACTGAAAGTAAATGGTGACGTCATCGTTA
AACATTTAGATGGATACGTTTTACTCCACTTATTCGACCTTCGAAAAGAG
gctCCAGATACATTCTACAAGTTCTTAAAGAAAGACCTCGCATTGGATAC
GCTGAAAAATCTATTCCAATTTGCGGACTGTCTGGCCAAACTTTTGGACG
ATACATGAAATTCTTAAGCCTGAAATTTGCAGATAAAGAGGTTGCGTGAA
ATAGTGGCGACTACCTGTGCTTGTAACATTGCAACAATTTGAACGATATT
AACAAAACATTGACTAAATGAAACCAACACTGTGCGATGTATACAATGTG
TGTTGAATAACGTAACGATCGCCGTACTCTCTAATGTAATGAATGGGAAA
ATAATTCTTGGAATATAATAACGACCGAAATTCTCCTGAGGACCAAATGA
TAACTAACATCATTGAAAAGTAATTCCAGTATGAGATTTATATCTATCAT
CCAAAATAAACAATGAGTATAATAAATTTACAAGAATGCGGCAATACTAT
GATATCAATGAAGTTATCGTCTTTTATGCTCCATACAAATCATTGGAGAT
TGTTTTCGTTTGTCTGCGTTTCGCTGTTTTGGTATGAATTGTATAACACA
ATGGTTGAAGCAAACAGTATGAGAAAGCCAAGTTCACCAATAGGTTGAAA
GCACCGTCGCTTTTAAAAGCATGATCAGTGTTTTGAGTGTTTATACAATA
AATTGGAAGTGGGAGCAAGCAAATCACAAATAAAACGATGAAAATGCCAA
GAAGTTTGATAAGTTTAATCTCGAAAAGATTATTAAAACGTTTCTGATAT
GCTAaatcaatgataaaatgttGTTTGTTGGTTTGAATGTTCGATTGTAG
CTCGATTTCTTCCTCGATTCGCTGAAACGGCTTGGTTTGTATTTGTTTAG
CGCTACTTAAATTACGACATTTCTCCGAGTTACAGTAAAACGTGTGAAGA
AAATATTGATTCTGTTGTCTGCGTATGGTTGACATTATACGTCCGTATAA
AACTACGATGATTATTGTTCCTGGGATGATTATAAAGGACGCGTAATACG
TGAAAAACTCCTCGTAATTGCGAACATCGACGTCGAAAAGGTAGTGCAAT
ACTAACACAATGAAGCATGTTAAGCACCAAGCTGCGATGCAAATTCGAAT
GTATATCTTACGATTGATGCGTCTATAAAAATCCTTGTTGGTAACAGCTA
GGTAACGAATCGCAACAAAAATGATCAACTTTAGTGAAACTATCGTCAAC
GCGATACGCGCCAATAAACTTCGGTAATAAAAGAGTTCGACGTGACTGCT
GGTTGATCCTTCTTTAACAGCGATATATATTAAAGTTGAAACACTGACCA
GCCAGTTTGTGATGCCGCAGTGGATGAAAAATATTGACGTCACATTGAGC
ACCAGACCTCTTTTCTTGGAATATAGCATCAGTAATTTTAATGTGTTGAG
CACAATGGATAAGATTGCGATCAAGAGTCGTAACTTATCGGTGACGTTTA
TGGAATCCATTTTGATTTTGTGGTAAGTGGTAGCACActctaaaatgaca
aaatatggttgtttatttatatttatttattaaatttgatcatgtattta
tttttctaaattattttgattGCTGTACATAAATATTTTGTAgctaataa
atttcataaaCACTAATAGAAAAAAGAtcaatagaataaaaaaattaata
tgtTGGTTGTAGATTGCAATGAGACGTGAGAGATTCTGCgcttatttgaa
attttcagttatctgtaaactATGAATGGCGAAGTCTATGAAAAGTG Run BLAST on NCBI transcript from alignment at scaffold_314:234177..237372- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058875 ID=TCONS_00058875|Name=TCONS_00058875|organism=Clytia hemisphaerica|type=transcript|length=3196bp|location=Sequence derived from alignment at scaffold_314:234177..237372- (Clytia hemisphaerica)
AGAGAGGAGCTCCGGAAGAAAATTTCGCAATGGACACCAGATGACGTGCG
TAAATGGATCACATCCAACAAACTGAAAGTAAATGGTGACGTCATCGTTA
AACATTTAGATGGATACGTTTTACTCCACTTATNCATTCTCCATATTGGA
TTGGTTCTCAAATTTTGCTTTTATGTAGATTATTTTTAGTAGGATTTCTG
ACTTATCTCTTAATGGTTTAAAATTTGTAATGTTGACCTCTTGTAAAAAT
TCAAACACCTTTGTCCACACTTTCACTTTTTTGCATTCAATCGATTTAGT
CTTGAAGCCTCAACCTAGTCCTCAACCATCCACAAAATTCAACGATCGAG
AGGAGCTCCGGAGAAAAATTTCGCAATGGACACCAGATGACGTGCGTAAA
TGGATCACATCCAACGAACTGATAGTAAATGATGACGTCATCGTTAAACA
TTTAGATGGATACGTTTTACTCCACTTATTCGACCTTCGAAAAGAGGTGT
GTATAGAGAAGATTGTTCGTTATTACACTCTTCCTCTATTGACAAAAAAG
CGTATATAGCGAGTAGAAAGAGATTAATCCAATAGAATTAGGTTTTACCT
CGAAAATGATATGTGGCTGAATTGAATGTGCTCACCCAGCAAAAATCATT
GACCTTAAAACCTATAACTCCCTTAGTTTATATGTCTTTGTGTCCGATGG
AACTTTTTTACTCGTGTGTTTGAAGCTTTTCTTCGAAATTCTATCGAGGG
TCTTATGTATAAACCCAACAAAACAAAGCAGGCTATGCCATTTTTTCCCA
TTTTCTTTAAAATGCGGAGAAGATTGTTGTGAAATATTGCTGGTGAGATA
AAGGCCATTTTCTCACTTGATTATTACCGTTTGAGATTTCAAAGTTATGA
ACAAAGGTTCGAGAAGAACAAAAACACATTGTGACAAATCTGACTTTATA
ATCCTGATTAAAAAAAAAGTAGTAGAGTTTCCTCTCTAAATTTTATAAAT
CCCATCTTTCCTATACTTCATTTGATGTATCGTTTGTTCAGGAAGAAAGG
TTTTAGACAATCAGTGGGAGGGGACATAAAACCAACCCACTCAACAAGCT
TTATTTAGTGTAGTGCTCTTTTAATAAGATTTAAAAAAGAATGTATGCGA
ACTATATTACTTCGGATGCAAGCTCCTAACTTTCTCTGTATCACCGGGAT
ACGCCCTGTATCACCGGGATCCCCCTAGCCACTGAAAAGTCTGTCTAAGA
ATCAAGAGCTGTTTCAATCTTAAATACCCAGAGATCTCCATTAAACAACT
ATACTTAACACTTTCTTGCACTTATCCCAACAGGCTAAAGTTTTGTTCGA
GTTTTGAGCAATCTTTGTAATCCGACGTCAATGGGCAGAGAATGTTTGTG
CCCTGCTCTTTCAGCTACAAATTGAATATTGATACTTTTTTTATTTTAGG
CTCCAGATACATTCTACAAGTTCTTAAAGAAAGACCTCGCATTGGATACG
CTGAAAAATCTATTCCAATTTGCGGACTGTCTGGCCAAACTTTTGGACGA
TACATGAAATTCTTAAGCCTGAAATTTGCAGATAAAGAGGTTGCGTGAAA
TAGTGGCGACTACCTGTGCTTGTAACATTGCAACAATTTGAACGATATTA
ACAAAACATTGACTAAATGAAACCAACACTGTGCGATGTATACAATGTGT
GTTGAATAACGTAACGATCGCCGTACTCTCTAATGTAATGAATGGGAAAA
TAATTCTTGGAATATAATAACGACCGAAATTCTCCTGAGGACCAAATGAT
AACTAACATCATTGAAAAGTAATTCCAGTATGAGATTTATATCTATCATC
CAAAATAAACAATGAGTATAATAAATTTACAAGAATGCGGCAATACTATG
ATATCAATGAAGTTATCGTCTTTTATGCTCCATACAAATCATTGGAGATT
GTTTTCGTTTGTCTGCGTTTCGCTGTTTTGGTATGAATTGTATAACACAA
TGGTTGAAGCAAACAGTATGAGAAAGCCAAGTTCACCAATAGGTTGAAAG
CACCGTCGCTTTTAAAAGCATGATCAGTGTTTTGAGTGTTTATACAATAA
ATTGGAAGTGGGAGCAAGCAAATCACAAATAAAACGATGAAAATGCCAAG
AAGTTTGATAAGTTTAATCTCGAAAAGATTATTAAAACGTTTCTGATATG
CTAAATCAATGATAAAATGTTGTTTGTTGGTTTGAATGTTCGATTGTAGC
TCGATTTCTTCCTCGATTCGCTGAAACGGCTTGGTTTGTATTTGTTTAGC
GCTACTTAAATTACGACATTTCTCCGAGTTACAGTAAAACGTGTGAAGAA
AATATTGATTCTGTTGTCTGCGTATGGTTGACATTATACGTCCGTATAAA
ACTACGATGATTATTGTTCCTGGGATGATTATAAAGGACGCGTAATACGT
GAAAAACTCCTCGTAATTGCGAACATCGACGTCGAAAAGGTAGTGCAATA
CTAACACAATGAAGCATGTTAAGCACCAAGCTGCGATGCAAATTCGAATG
TATATCTTACGATTGATGCGTCTATAAAAATCCTTGTTGGTAACAGCTAG
GTAACGAATCGCAACAAAAATGATCAACTTTAGTGAAACTATCGTCAACG
CGATACGCGCCAATAAACTTCGGTAATAAAAGAGTTCGACGTGACTGCTG
GTTGATCCTTCTTTAACAGCGATATATATTAAAGTTGAAACACTGACCAG
CCAGTTTGTGATGCCGCAGTGGATGAAAAATATTGACGTCACATTGAGCA
CCAGACCTCTTTTCTTGGAATATAGCATCAGTAATTTTAATGTGTTGAGC
ACAATGGATAAGATTGCGATCAAGAGTCGTAACTTATCGGTGACGTTTAT
GGAATCCATTTTGATTTTGTGGTAAGTGGTAGCACACTCTAAAATGACAA
AATATGGTTGTTTATTTATATTTATTTATTAAATTTGATCATGTATTTAT
TTTTCTAAATTATTTTGATTGCTGTACATAAATATTTTGTAGCTAATAAA
TTTCATAAACACTAATAGAAAAAAGATCAATAGAATAAAAAAATTAATAT
GTTGGTTGTAGATTGCAATGAGACGTGAGAGATTCTGCGCTTATTTGAAA
TTTTCAGTTATCTGTAAACTATGAATGGCGAAGTCTATGAAAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058875-exon-scaffold_314-1575043694:237270..237372 | TCONS_00058875-exon-scaffold_314-1575043694:237270..237372 | Clytia hemisphaerica | exon |
| TCONS_00058875-exon-scaffold_314-1575043694:236877..236923 | TCONS_00058875-exon-scaffold_314-1575043694:236877..236923 | Clytia hemisphaerica | exon |
| TCONS_00058875-exon-scaffold_314-1575043694:234177..235923 | TCONS_00058875-exon-scaffold_314-1575043694:234177..235923 | Clytia hemisphaerica | exon |
| TCONS_00058875-exon-scaffold_314-1510915933:237270..237372 | TCONS_00058875-exon-scaffold_314-1510915933:237270..237372 | Clytia hemisphaerica | exon |
| TCONS_00058875-exon-scaffold_314-1510915933:236877..236923 | TCONS_00058875-exon-scaffold_314-1510915933:236877..236923 | Clytia hemisphaerica | exon |
| TCONS_00058875-exon-scaffold_314-1510915933:234177..235923 | TCONS_00058875-exon-scaffold_314-1510915933:234177..235923 | Clytia hemisphaerica | exon |
| TCONS_00058875-exon-scaffold_314-1491911889:237270..237372 | TCONS_00058875-exon-scaffold_314-1491911889:237270..237372 | Clytia hemisphaerica | exon |
| TCONS_00058875-exon-scaffold_314-1491911889:236877..236923 | TCONS_00058875-exon-scaffold_314-1491911889:236877..236923 | Clytia hemisphaerica | exon |
| TCONS_00058875-exon-scaffold_314-1491911889:234177..235923 | TCONS_00058875-exon-scaffold_314-1491911889:234177..235923 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:234177..237372 - |
Blast
The following BLAST results are available for this feature:
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