TCONS_00058878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058878
Unique NameTCONS_00058878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058878 ID=TCONS_00058878|Name=TCONS_00058878|organism=Clytia hemisphaerica|type=transcript|length=1282bp
CTGATTTCTGTTAGACTTTTCGATGGTTTGTAGTAAGCTCGTCATACAAT
ATGCAGTTatggatgaaaatgaagattggATTTTTATACCTCTGGATGAA
CATGTGCTGGATTTCTCTCGTAAATGGAGTTGATGAATCAGAGCTTTCAC
CGATACTCAAGAAAATTTTGGATCCATTGATCTATGAAAAAAGTTCAATA
CCAATCAAGGATGatCAAAAGCCGATCCAAGCGACAGTGAGCATTTTCAC
TAACGATATGATACCACGTGAAAATCTCGATATGcattttacaTACGATT
TCTTCTTTACAATCGAATGGAATGATTACCGTTTGAAACATAACCTGTCA
AGCTCCAATGATACTGTTTTACCTTTCGATTACACCATTTTGAAAGACAT
CTGGGCACCGAATCTCTACTTCGCACAAACGAAAGACGGACTTGTACCAG
ACTTCCCACAGCCGAATGTCATGGTCACGATCGCCAAGGACGGTGATGTG
CGGTTGAATTATAAgaTAATATTGACGTTATTCTGTGCTATGGATTTGAC
GTTTTATCCGTTCGATATTCAAAAGTGTAATTTGAATCTGGAATCGTGTC
AATGGAAAGGTTTAATTATCGAATTCACATTTTATCGAAACGCACCTTTG
TATCTGATACGAGATTTTCTACCATGTACTCTGATAGTCATGCTATCTTG
GGTCAATTTCTGGATCAACTTTCGAAGTACGCCTGCGCGGACCGCCCTCG
GTATAACAACTGTATTGACAATCGTTACCATGACGAACAACGTCCGGAAT
AATTCGCCAAGTTCATCAGGGTTGTTTCGAAGTATAGACTTTTACATGTT
GGTATGCAATATGTTTGTTTTTGCCGCTCTTGTTGAAGGGGCGTTAGTGG
GAATGACCGCCCCTAATGAGAAATATGTGAAAAGTACTTTTAAGAATCAA
GTCAAGAAGGTTCTGCGAAATACACGAAATAAAAGCAAGAAGCTGGATAT
GGCGGATGTAGTGAAGAGGCGATTAAAAGAAGAGAGTGAAAaggagaaag
aagaagaagaagatgaagagaAAATCACATCCACAATCATCCAACGCGTT
CGACCAATCACAACAGAGACATTCAAACTCGGCCCATTCCACTTTTACAA
AGGAGAAATTCATATCATTGATCGCATTTGTCGatttttatttccttttc
tttttcttgtatTCAATTttaccttcttcatttttcatatgTTGAAAGAT
GAAAGTGTTTTGTAAATATAGTTCAATAAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_314:271512..278079-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058878 ID=TCONS_00058878|Name=TCONS_00058878|organism=Clytia hemisphaerica|type=transcript|length=6568bp|location=Sequence derived from alignment at scaffold_314:271512..278079- (Clytia hemisphaerica)
CTGATTTCTGTTAGACTTTTCGATGGTTTGTAGTAAGCTCGTCATACAAT ATGCAGTTATGGATGAAAATGAAGATTGGATTTTTATACCTCTGGATGAA CATGTGCTGGTATGTGCCAAACTCCTACCCAGTCCCCAGCTCACAGCTCT TTCAGCATTTACGATTTTACCGCCTTTAAGTCCAGAGTGGGTAGGAGTCA GTAAGAAATTTTACATTTTTAGCTGAAAGGAGAGGGTCCAATAAGTGTGA GACAGGGGTGAGTCGTCACCAATCCCTCCTATTTTTTCATCCTTTTTCCA CATCTTGAAAGTTCGATTATGCATATTAAATTTGCGATTCAACTAGGTTG CTTTTCAAAATGTCACCGTCAATTAACTAAAGTTCCATCTTTGCAAAACT AAGAATCGAAATGGTGCCTGATACCTGGGATTCTAGTAAACTTACTTCCA CAAGTCATGTCATCAGTCTATTAAAAAGTCTTTATTGGATGACAGAGACA TGATACACACAGTTTACCTTGCTGATACATCTCAGAGAAATTCTTCAATT AGAGGACACATCGTAATAAAGGGCCGCTTCATAGTTAGGCTGCATGCATC CCCAAATTATTTTTGATACATCAAAACTTATCAGAGGGGATGTGTGCAGC CTACTTCATAGTATGTGTCTTGGCAGAATCTTTTTTGAGAAGGGCTTACT AGAAAAGGGAAATATAATCAACCTATCTGTTTCATTGAAGAAGGTTACTA ATATAACAAATAACCGCGTTCATCAGAGGGATGAATTCTTATATTACAGG ATTTCTCTCGTAAATGGAGTTGATGAATCAGAGCTTTCACCGATACTCAA GAAAATTTTGGATCCATTGATCTATGAAAAAAGTTCAATACCAATCAAGG ATGGTAAGAATGTTTTCATCGTAATCCATAAGTCCCTTATCTATCTTTTA TGTAGATATATTTCTACGATGCAAATTTCCCAAGAGATTTCAACCTGTGC TTTCAAATCAGACTTCAGTAACCTGAGATTAGATTGTGATTGTTTTCTGC ACATCACGCTGAAGCTCTAAAGAGATGTGTCCAAATTGACAAAAAACGTC AAAATAAGGTCTTCTATCTTACATCCATGATGGGTGGCGTAGTGGTATAT GATACCCACGTATCATCCTTGACTCCCGCCTGGGAGGCCCGAGTTCGATA CCCACCGTGTCTCTACGATTCACTTGGCAAGTGAATATACCTTCGCCCGG GTCAACCCATGCCATGTGAGGGGATAGGGTACAATTACTCTGATACAAGA GTGTGGGTAGATTAGACAGACATTGTGACGTGCCTTGACACTCATAAGGT TCGGCCTCGCGTGAGCATCGCTCTCCCGCAGTGTCGTTTGAGTGTTATGG TATACGCCATGGCTTGGCATGAGTCTGTCAAGTCGCAGTGTCTGTCAGCG CCGTGATTCCTACTCCTTCGTGGGTAGGACCCATCCCGAATGCATTCGGA GGGCTCATATCTATTCTATCTATATTCTATCTTACATCCATATAGTATCG TTAAAATAATTTATCAGTTACAATATACTAAAATCGTAAAAATTTTATTT AGATCAAAAGCCGATCCAAGCGACAGTGAGCATTTTCACTAACGATATGA TACCACGTGAAAATCTCGATATGGTATGTCTGTTTATTTTTTGCTTAGTT TTCTACTACTTTTTATATACTTGTTATATATGACTGTTATGGCCTTCATC CAATTTTCTTGGTGATTGTCTTACGGTTAAGTTTCACAGCTTTTGCAGCA ATTTGACCGACTGAGGTAAAGTAATTGAATGATTCTGTTTACGGACAACC AAAACAGATTCTCCAGGATAGACAGTAGAGCAGACAAGATCTACTCATGC ATTTTCTTTCAATTTTTAAGCTGATCCTGATTTCTTACGTGTTAGTGCTA CGACTTACGTATGTTCTATAGTCGTGGATATGATTAGAAAATACAAACTA TTTCTCAATTTTTCAGCATTTTACATACGATTTCTTCTTTACAATCGAAT GGAATGATTACCGTTTGAAACATAACCTGTCAAGCTCCAATGATACTGTT TTACCTTTCGATTACACCATTTTGAAAGACATCTGGGCACCGAATCTCTA CTTCGCACAAACGAAAGACGGACTTGTACCAGACTTCCCACAGCCGAATG TCATGGTCACGATCGCCAAGGACGGTGATGTGCGGTTGAATTATAAGTAA GTAAGCGGTTAAACTTTCATTAAAGTTTATGATGAATATATATAGTCTAG AAGTATAAAACCTTCAACTACTCAAAATGGAAACAATAAAGACAAAAACC CACAAAACAAAAAGACAATACAAATACAACAAAAATCTAGTATGAACATT CACAGGAAATCAATCAGGTTGGAGTAGAAAAGGAAAATATGTATATATAA TATATATATAAAAATATTGAAACTATGATCACTTTGATCATTGAGAAAAA TAATGGAATGGGCTAGACTTATACCGAAAAGAAGGTGAACAGAGCAGAAT TAGGGCACAAAGAAGGAGTTTCATTTCAAAAAATATTCTAGATTGATTAC TTGGTTGGATGAAAAATAATGTTATGTTAAACGGCGGGTACGCTTATAAG AGTACCAAGAATAATACTATAGTCTCTTAAGGGCTCTGACCATAGTCAGA AAATTGATTTTAGTATCTGAAAGAATTGCCTTTATAAATTACTTTTTAAT CAAACCCCTTCAGAGAAATTAAGATCTTAATTGCAAAAATGACGTTATGA ACTTTAAAAAGACGTTAATAATATGTTGCATCACGTTCTTTTATAAAAAG TGCTAAGTTTTAATGGGTAATTAACCTTTTTGTTTCGAACTTTTTTCAAA CTGTCCGCAAAGAATTGATTTTAAATGACTATTTTAAATTTTGCGGAAAA CTTTTCTAAAAAGATGTGTCAAAAGTGATGACTATTTTTTTAAGCAAAAT CCAGATGAAAAATTGATGAAAAACCACTATTTTGAAGATTTCGAGAGAAA GAAGCATTTACAAAAATGTTCCGCAAAAATTTTTATTGTTCGGTAAAAGA TACACCATCTACTGCGAAAAAATTTTCAAAATGTTTTTTCTTTGCCGAAA CTAAGCTCTTCAAAGTTGAAATACTCCTCCTCGCAAAAGTCTTCATTTTC TTCTTCATCAAATTTTTTCAATGAATGAGTCCTTTTTGAATTTTCAGATT CAGGAATAGTTTGTCTAACAGAATATGTATAACATGCCATAGTTTTGTTG GTTAAATCAGTCAAAAAACACATTTTAAACACGGCAATTATGAAAAATTC ACTATGGTCAGAGCCCTTAAATGATGGGGAGTCAAGAATGAGCACTTGGG TTGGAAAAATTTCTCAAATACTAAATTGCCGGGTTTGGAAATGAGGAACT TATGGAAATACTTTTTCACAATTAAATAAGCGAGCGATTAGGGAGTATTT TTAATCTCAGACAATCAATTTATTTTTCAGGATAATATTGACGTTATTCT GTGCTATGGATTTGACGTTTTATCCGTTCGATATTCAAAAGTGTAATTTG AATCTGGAATCGTGTAAGAATTTATTGTTTATAAATATGGTGTCAAAATC ATCTCCAAACCTCACAGGTTTTGATAAAAACGAAGAATTACATACAGGGG GCATGTTTGATAATGCCTCCCATCTACAGACAAGAGGGAAAGGAAAAATT GATAACAGATCGCAACCTCGTCCCCGTGTATCCCAGGCTTTATTCATGTT ACTGATTGACGCGTTCGAAAACCAGACAATGCCAGGGTATTATCTAGCAC TACCAGTAAGCATCAAAAAGCTGATAATACGCAGGGAACGAGGTTGAACA GATCTTTTTATTTCTTATGTTAAAACAATACGTTGGGCCATTTACAGTAT AAAGAAGAATTTTTCCAAAAGTAATAAAATCCTGTTTTGCAAGGTTCTTT ATGGCACTCGGAAATGTTTAGATCGAGAGATTTACAAAGCTGAAAAATGC TTTGAGGGATGCTTATATTCTAAGCAAAATTTTATTAGAGAAATTTCAAA AATCCTGCCAATAACAAACAAATTCTGAAAATGAAGGCTCAAAGTAATGT TTAGCATACGCTTAAATTTTTGCCATATATGAGCGCCTAGATACGCTTAT AAGCGCAATGCTTATAAAAAAAAATTTGAAGAATTACTTTTTTTGTCCCA AAAAGGGACCCTGGATGGACATAAAATGAAATGACCCATTTAAGTTGCAT AAGCTTACCGGCTATTTTTTGTTAACATTAGATTCATATGGTTTGCATTT CCTGAACATCAGCTGGGGATACTTCATATATGACAAAGAAAGAGTGCGAA CACAAGATTTCAATAAAGTTGAAATCAAAACTGATCAGACAGTCTCAACC TATCACACTATTGGTCAGTTCATACTATCTATTTTTTGATTAATTAAATT TAGGTTTATTATCCTCAGATTCTTTGCAAAATGTTTACTAGAATGGCTCA TAGAGATACCCTCAAAATATCTCTCAAATTTCATTAAAAATGCCAACTTT GAGTTTTTGGCTTTCTTCTGTTTCTCCCATCTATTTGCTTACCTTCACTC ATAAGATTAGTAAGATATGAAAAGCTGTTAATAATACACGTTTTTCTTTA TTATAAGGAACACGTTTATAAGGAACTCGAGGCTAAAAATGGTCCAAAAA ATAAGGAATTGTTAAGGAACTGCTCAGGCTGAGAATAAGAAAACAAGTTT TAAGGAATCCAATTTTTGCGAATCCANNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNTATGTAAATAAGGAACTCGATAAGGAACTTTGA GGCTGAAATTCTCTGTAAAAATAAGGAACTCCAGGCTCAGAGCAAAAGTT AAGGTTCCTTATAAAAAAACGTGTATCCATCCATGTCGATTCATCACGAT TTTTCAGGTCAATGGAAAGGTTTAATTATCGAATTCACATTTTATCGAAA CGCACCTTTGTATCTGATACGAGATTTTCTACCATGTACTCTGATAGTCA TGCTATCTTGGGTCAATTTCTGGATCAACTTTCGAAGTACGCCTGCGCGG ACCGCCCTCGGTATAACAACTGTATTGACAATCGTTACCATGACGAACAA CGTCCGGAATAATTCGCCAAGTTCATCAGGGTTGTTTCGAAGTATAGACT TTTACATGTTGGTATGCAATATGTTTGTTTTTGCCGCTCTTGTTGAAGGG GCGTTAGTGGGAATGACCGCCCCTAATGAGAAATATGTGAAAAGTACTTT TAAGAATCAAGTCAAGAAGGTTCTGCGAAATACACGAAATAAAAGCAAGA AGCTGGATATGGTAAGTAGAATGGAATCTCTATAAATCGAATACCCACAG GGAACTGAAATTTGTTCGAGTTAAAGAAACTTGCTATGTCAAATGTTTCT ACTTTGCAGGTATCAAAAGCTTGCGAGCTTTAAGGAACATTTGAAATATA GAGGGTCGATTTATAAAAATCCTACTGTACTTGTGTGTGAATTGAAGCAC CGGGATGAAATCTTTCCAGAAATGTAGCCCTGTAAATTTGATCCATCTAC TTCCATTTGTTCATCTAATTTATTTAAAATTTGCCGTAAACCCGATATTG GTGACGAAAGGTCTTTTAGAATGTTTTTAAAAGAAAGAGCTTTCTAGATA TTGTTGTTCAAATCCTCTATTAAGAGATAGCCCGCGTTTTCTTAATCGTG GAGAGTGTGTCGTAACATTATTGCATTATCTAGCACCCAGATGCAAAAAT TTTCATCCGACACGCTAAAACTCTGGAGGTCGGAAAATTTTTCAACATCT GGAAGGTTTACATTGCAGAATTTTGCAAGACCACGTCAAGAATTTTGCAG CCGGAGGTCTGGTAACCCAGCCCTCGTTTTTGGGGATTGGCTGGTCCAAC CGAAATATTTATACCTTCCCGCACAGGAAGGCTGTTGAACCTGACTGGGG ATGCGGCACATCAAAGGCTGACTATCATTTCTCTCCGATGGGAAATTGAC CCGATCCTTTAGAGCTTTAACGTGGGCGGCTGCTAATCCACCATCGGAAT ATCAGATAAATGATTGCACTGCTTCTTGTCTCATTAGGCGGATGTAGTGA AGAGGCGATTAAAAGAAGAGAGTGAAAAGGAGAAAGAAGAAGAAGAAGAT GAAGAGAAAATCACATCCACAATCATCCAACGCGTTCGACCAATCACAAC AGAGACATTCAAACTCGGCCCATTCCACTTTTACAAAGGAGAAATTCATA TCATTGATCGCATTTGTCGATTTTTATTTCCTTTTCTTTTTCTTGTATTC AATTTTACCTTCTTCATTTTTCATATGTTGAAAGATGAAAGTGTTTTGTA AATATAGTTCAATAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037088XLOC_037088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058878-exon-scaffold_314-1575043694:277971..278079TCONS_00058878-exon-scaffold_314-1575043694:277971..278079Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1575043694:277177..277280TCONS_00058878-exon-scaffold_314-1575043694:277177..277280Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1575043694:276407..276477TCONS_00058878-exon-scaffold_314-1575043694:276407..276477Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1575043694:275834..276063TCONS_00058878-exon-scaffold_314-1575043694:275834..276063Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1575043694:274467..274549TCONS_00058878-exon-scaffold_314-1575043694:274467..274549Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1575043694:272569..272972TCONS_00058878-exon-scaffold_314-1575043694:272569..272972Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1575043694:271512..271792TCONS_00058878-exon-scaffold_314-1575043694:271512..271792Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1510915933:277971..278079TCONS_00058878-exon-scaffold_314-1510915933:277971..278079Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1510915933:277177..277280TCONS_00058878-exon-scaffold_314-1510915933:277177..277280Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1510915933:276407..276477TCONS_00058878-exon-scaffold_314-1510915933:276407..276477Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1510915933:275834..276063TCONS_00058878-exon-scaffold_314-1510915933:275834..276063Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1510915933:274467..274549TCONS_00058878-exon-scaffold_314-1510915933:274467..274549Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1510915933:272569..272972TCONS_00058878-exon-scaffold_314-1510915933:272569..272972Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1510915933:271512..271792TCONS_00058878-exon-scaffold_314-1510915933:271512..271792Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1491911889:277971..278079TCONS_00058878-exon-scaffold_314-1491911889:277971..278079Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1491911889:277177..277280TCONS_00058878-exon-scaffold_314-1491911889:277177..277280Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1491911889:276407..276477TCONS_00058878-exon-scaffold_314-1491911889:276407..276477Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1491911889:275834..276063TCONS_00058878-exon-scaffold_314-1491911889:275834..276063Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1491911889:274467..274549TCONS_00058878-exon-scaffold_314-1491911889:274467..274549Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1491911889:272569..272972TCONS_00058878-exon-scaffold_314-1491911889:272569..272972Clytia hemisphaericaexon
TCONS_00058878-exon-scaffold_314-1491911889:271512..271792TCONS_00058878-exon-scaffold_314-1491911889:271512..271792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:271512..278079 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.127527 0 0 0 0 0 0.308222 0.543855 0 0 0 0 0 0 0 0 0 0 0 0.79738 0.0906748 0.0483853 0.0366985 0.18695
Blast
BLAST of TCONS_00058878 vs. Swiss-Prot (Human)
Match: GLRA2 (Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.714e-39
Identity = 95/280 (33.93%), Postives = 136/280 (48.57%), Query Frame = 3
Query:  222 PIQATVSIFTNDMIPRENLDMHFTYDFFFTIEWNDYRLKHNLSSSNDTVLPFDYTILKDIWAPNLYFAQTKDGLVPDFPQPNVMVTIAKDGDVRLNYKIILTLFCAMDLTFYPFDIQKCNLNLESC---------QW---------KGLI----------------------------IEFTFYRNAPLYLIRDFLPCTLIVMLSWVNFWINFRSTPARTALGITTVLTIVTMTNNVRNNSPSSSGLFRSIDFYMLVCNMFVFAALVEGALVGMTAPNEK 923
            P+  T +IF N         M +  + F   +WND RL +  S   D  L  D ++L  IW P+L+FA  K     D    N ++ I+K+G V  + ++ LTL C MDL  +P D+Q C + LES          +W         +GL                             ++F   R    YLI+ ++P  LIV+LSWV+FWIN  + PAR ALGITTVLT+ T ++  R + P  S + ++ID +M VC +FVFAAL+E A V   +   K
Sbjct:   70 PVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAY--SEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYV-KAIDIWMAVCLLFVFAALLEYAAVNFVSRQHK 346          
The following BLAST results are available for this feature:
BLAST of TCONS_00058878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLRA23.714e-3933.93Glycine receptor subunit alpha-2 OS=Homo sapiens G... [more]
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