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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058878 ID=TCONS_00058878|Name=TCONS_00058878|organism=Clytia hemisphaerica|type=transcript|length=1282bp CTGATTTCTGTTAGACTTTTCGATGGTTTGTAGTAAGCTCGTCATACAAT ATGCAGTTatggatgaaaatgaagattggATTTTTATACCTCTGGATGAA CATGTGCTGGATTTCTCTCGTAAATGGAGTTGATGAATCAGAGCTTTCAC CGATACTCAAGAAAATTTTGGATCCATTGATCTATGAAAAAAGTTCAATA CCAATCAAGGATGatCAAAAGCCGATCCAAGCGACAGTGAGCATTTTCAC TAACGATATGATACCACGTGAAAATCTCGATATGcattttacaTACGATT TCTTCTTTACAATCGAATGGAATGATTACCGTTTGAAACATAACCTGTCA AGCTCCAATGATACTGTTTTACCTTTCGATTACACCATTTTGAAAGACAT CTGGGCACCGAATCTCTACTTCGCACAAACGAAAGACGGACTTGTACCAG ACTTCCCACAGCCGAATGTCATGGTCACGATCGCCAAGGACGGTGATGTG CGGTTGAATTATAAgaTAATATTGACGTTATTCTGTGCTATGGATTTGAC GTTTTATCCGTTCGATATTCAAAAGTGTAATTTGAATCTGGAATCGTGTC AATGGAAAGGTTTAATTATCGAATTCACATTTTATCGAAACGCACCTTTG TATCTGATACGAGATTTTCTACCATGTACTCTGATAGTCATGCTATCTTG GGTCAATTTCTGGATCAACTTTCGAAGTACGCCTGCGCGGACCGCCCTCG GTATAACAACTGTATTGACAATCGTTACCATGACGAACAACGTCCGGAAT AATTCGCCAAGTTCATCAGGGTTGTTTCGAAGTATAGACTTTTACATGTT GGTATGCAATATGTTTGTTTTTGCCGCTCTTGTTGAAGGGGCGTTAGTGG GAATGACCGCCCCTAATGAGAAATATGTGAAAAGTACTTTTAAGAATCAA GTCAAGAAGGTTCTGCGAAATACACGAAATAAAAGCAAGAAGCTGGATAT GGCGGATGTAGTGAAGAGGCGATTAAAAGAAGAGAGTGAAAaggagaaag aagaagaagaagatgaagagaAAATCACATCCACAATCATCCAACGCGTT CGACCAATCACAACAGAGACATTCAAACTCGGCCCATTCCACTTTTACAA AGGAGAAATTCATATCATTGATCGCATTTGTCGatttttatttccttttc tttttcttgtatTCAATTttaccttcttcatttttcatatgTTGAAAGAT GAAAGTGTTTTGTAAATATAGTTCAATAAAAC Run BLAST on NCBI transcript from alignment at scaffold_314:271512..278079- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058878 ID=TCONS_00058878|Name=TCONS_00058878|organism=Clytia hemisphaerica|type=transcript|length=6568bp|location=Sequence derived from alignment at scaffold_314:271512..278079- (Clytia hemisphaerica) CTGATTTCTGTTAGACTTTTCGATGGTTTGTAGTAAGCTCGTCATACAAT
ATGCAGTTATGGATGAAAATGAAGATTGGATTTTTATACCTCTGGATGAA
CATGTGCTGGTATGTGCCAAACTCCTACCCAGTCCCCAGCTCACAGCTCT
TTCAGCATTTACGATTTTACCGCCTTTAAGTCCAGAGTGGGTAGGAGTCA
GTAAGAAATTTTACATTTTTAGCTGAAAGGAGAGGGTCCAATAAGTGTGA
GACAGGGGTGAGTCGTCACCAATCCCTCCTATTTTTTCATCCTTTTTCCA
CATCTTGAAAGTTCGATTATGCATATTAAATTTGCGATTCAACTAGGTTG
CTTTTCAAAATGTCACCGTCAATTAACTAAAGTTCCATCTTTGCAAAACT
AAGAATCGAAATGGTGCCTGATACCTGGGATTCTAGTAAACTTACTTCCA
CAAGTCATGTCATCAGTCTATTAAAAAGTCTTTATTGGATGACAGAGACA
TGATACACACAGTTTACCTTGCTGATACATCTCAGAGAAATTCTTCAATT
AGAGGACACATCGTAATAAAGGGCCGCTTCATAGTTAGGCTGCATGCATC
CCCAAATTATTTTTGATACATCAAAACTTATCAGAGGGGATGTGTGCAGC
CTACTTCATAGTATGTGTCTTGGCAGAATCTTTTTTGAGAAGGGCTTACT
AGAAAAGGGAAATATAATCAACCTATCTGTTTCATTGAAGAAGGTTACTA
ATATAACAAATAACCGCGTTCATCAGAGGGATGAATTCTTATATTACAGG
ATTTCTCTCGTAAATGGAGTTGATGAATCAGAGCTTTCACCGATACTCAA
GAAAATTTTGGATCCATTGATCTATGAAAAAAGTTCAATACCAATCAAGG
ATGGTAAGAATGTTTTCATCGTAATCCATAAGTCCCTTATCTATCTTTTA
TGTAGATATATTTCTACGATGCAAATTTCCCAAGAGATTTCAACCTGTGC
TTTCAAATCAGACTTCAGTAACCTGAGATTAGATTGTGATTGTTTTCTGC
ACATCACGCTGAAGCTCTAAAGAGATGTGTCCAAATTGACAAAAAACGTC
AAAATAAGGTCTTCTATCTTACATCCATGATGGGTGGCGTAGTGGTATAT
GATACCCACGTATCATCCTTGACTCCCGCCTGGGAGGCCCGAGTTCGATA
CCCACCGTGTCTCTACGATTCACTTGGCAAGTGAATATACCTTCGCCCGG
GTCAACCCATGCCATGTGAGGGGATAGGGTACAATTACTCTGATACAAGA
GTGTGGGTAGATTAGACAGACATTGTGACGTGCCTTGACACTCATAAGGT
TCGGCCTCGCGTGAGCATCGCTCTCCCGCAGTGTCGTTTGAGTGTTATGG
TATACGCCATGGCTTGGCATGAGTCTGTCAAGTCGCAGTGTCTGTCAGCG
CCGTGATTCCTACTCCTTCGTGGGTAGGACCCATCCCGAATGCATTCGGA
GGGCTCATATCTATTCTATCTATATTCTATCTTACATCCATATAGTATCG
TTAAAATAATTTATCAGTTACAATATACTAAAATCGTAAAAATTTTATTT
AGATCAAAAGCCGATCCAAGCGACAGTGAGCATTTTCACTAACGATATGA
TACCACGTGAAAATCTCGATATGGTATGTCTGTTTATTTTTTGCTTAGTT
TTCTACTACTTTTTATATACTTGTTATATATGACTGTTATGGCCTTCATC
CAATTTTCTTGGTGATTGTCTTACGGTTAAGTTTCACAGCTTTTGCAGCA
ATTTGACCGACTGAGGTAAAGTAATTGAATGATTCTGTTTACGGACAACC
AAAACAGATTCTCCAGGATAGACAGTAGAGCAGACAAGATCTACTCATGC
ATTTTCTTTCAATTTTTAAGCTGATCCTGATTTCTTACGTGTTAGTGCTA
CGACTTACGTATGTTCTATAGTCGTGGATATGATTAGAAAATACAAACTA
TTTCTCAATTTTTCAGCATTTTACATACGATTTCTTCTTTACAATCGAAT
GGAATGATTACCGTTTGAAACATAACCTGTCAAGCTCCAATGATACTGTT
TTACCTTTCGATTACACCATTTTGAAAGACATCTGGGCACCGAATCTCTA
CTTCGCACAAACGAAAGACGGACTTGTACCAGACTTCCCACAGCCGAATG
TCATGGTCACGATCGCCAAGGACGGTGATGTGCGGTTGAATTATAAGTAA
GTAAGCGGTTAAACTTTCATTAAAGTTTATGATGAATATATATAGTCTAG
AAGTATAAAACCTTCAACTACTCAAAATGGAAACAATAAAGACAAAAACC
CACAAAACAAAAAGACAATACAAATACAACAAAAATCTAGTATGAACATT
CACAGGAAATCAATCAGGTTGGAGTAGAAAAGGAAAATATGTATATATAA
TATATATATAAAAATATTGAAACTATGATCACTTTGATCATTGAGAAAAA
TAATGGAATGGGCTAGACTTATACCGAAAAGAAGGTGAACAGAGCAGAAT
TAGGGCACAAAGAAGGAGTTTCATTTCAAAAAATATTCTAGATTGATTAC
TTGGTTGGATGAAAAATAATGTTATGTTAAACGGCGGGTACGCTTATAAG
AGTACCAAGAATAATACTATAGTCTCTTAAGGGCTCTGACCATAGTCAGA
AAATTGATTTTAGTATCTGAAAGAATTGCCTTTATAAATTACTTTTTAAT
CAAACCCCTTCAGAGAAATTAAGATCTTAATTGCAAAAATGACGTTATGA
ACTTTAAAAAGACGTTAATAATATGTTGCATCACGTTCTTTTATAAAAAG
TGCTAAGTTTTAATGGGTAATTAACCTTTTTGTTTCGAACTTTTTTCAAA
CTGTCCGCAAAGAATTGATTTTAAATGACTATTTTAAATTTTGCGGAAAA
CTTTTCTAAAAAGATGTGTCAAAAGTGATGACTATTTTTTTAAGCAAAAT
CCAGATGAAAAATTGATGAAAAACCACTATTTTGAAGATTTCGAGAGAAA
GAAGCATTTACAAAAATGTTCCGCAAAAATTTTTATTGTTCGGTAAAAGA
TACACCATCTACTGCGAAAAAATTTTCAAAATGTTTTTTCTTTGCCGAAA
CTAAGCTCTTCAAAGTTGAAATACTCCTCCTCGCAAAAGTCTTCATTTTC
TTCTTCATCAAATTTTTTCAATGAATGAGTCCTTTTTGAATTTTCAGATT
CAGGAATAGTTTGTCTAACAGAATATGTATAACATGCCATAGTTTTGTTG
GTTAAATCAGTCAAAAAACACATTTTAAACACGGCAATTATGAAAAATTC
ACTATGGTCAGAGCCCTTAAATGATGGGGAGTCAAGAATGAGCACTTGGG
TTGGAAAAATTTCTCAAATACTAAATTGCCGGGTTTGGAAATGAGGAACT
TATGGAAATACTTTTTCACAATTAAATAAGCGAGCGATTAGGGAGTATTT
TTAATCTCAGACAATCAATTTATTTTTCAGGATAATATTGACGTTATTCT
GTGCTATGGATTTGACGTTTTATCCGTTCGATATTCAAAAGTGTAATTTG
AATCTGGAATCGTGTAAGAATTTATTGTTTATAAATATGGTGTCAAAATC
ATCTCCAAACCTCACAGGTTTTGATAAAAACGAAGAATTACATACAGGGG
GCATGTTTGATAATGCCTCCCATCTACAGACAAGAGGGAAAGGAAAAATT
GATAACAGATCGCAACCTCGTCCCCGTGTATCCCAGGCTTTATTCATGTT
ACTGATTGACGCGTTCGAAAACCAGACAATGCCAGGGTATTATCTAGCAC
TACCAGTAAGCATCAAAAAGCTGATAATACGCAGGGAACGAGGTTGAACA
GATCTTTTTATTTCTTATGTTAAAACAATACGTTGGGCCATTTACAGTAT
AAAGAAGAATTTTTCCAAAAGTAATAAAATCCTGTTTTGCAAGGTTCTTT
ATGGCACTCGGAAATGTTTAGATCGAGAGATTTACAAAGCTGAAAAATGC
TTTGAGGGATGCTTATATTCTAAGCAAAATTTTATTAGAGAAATTTCAAA
AATCCTGCCAATAACAAACAAATTCTGAAAATGAAGGCTCAAAGTAATGT
TTAGCATACGCTTAAATTTTTGCCATATATGAGCGCCTAGATACGCTTAT
AAGCGCAATGCTTATAAAAAAAAATTTGAAGAATTACTTTTTTTGTCCCA
AAAAGGGACCCTGGATGGACATAAAATGAAATGACCCATTTAAGTTGCAT
AAGCTTACCGGCTATTTTTTGTTAACATTAGATTCATATGGTTTGCATTT
CCTGAACATCAGCTGGGGATACTTCATATATGACAAAGAAAGAGTGCGAA
CACAAGATTTCAATAAAGTTGAAATCAAAACTGATCAGACAGTCTCAACC
TATCACACTATTGGTCAGTTCATACTATCTATTTTTTGATTAATTAAATT
TAGGTTTATTATCCTCAGATTCTTTGCAAAATGTTTACTAGAATGGCTCA
TAGAGATACCCTCAAAATATCTCTCAAATTTCATTAAAAATGCCAACTTT
GAGTTTTTGGCTTTCTTCTGTTTCTCCCATCTATTTGCTTACCTTCACTC
ATAAGATTAGTAAGATATGAAAAGCTGTTAATAATACACGTTTTTCTTTA
TTATAAGGAACACGTTTATAAGGAACTCGAGGCTAAAAATGGTCCAAAAA
ATAAGGAATTGTTAAGGAACTGCTCAGGCTGAGAATAAGAAAACAAGTTT
TAAGGAATCCAATTTTTGCGAATCCANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTATGTAAATAAGGAACTCGATAAGGAACTTTGA
GGCTGAAATTCTCTGTAAAAATAAGGAACTCCAGGCTCAGAGCAAAAGTT
AAGGTTCCTTATAAAAAAACGTGTATCCATCCATGTCGATTCATCACGAT
TTTTCAGGTCAATGGAAAGGTTTAATTATCGAATTCACATTTTATCGAAA
CGCACCTTTGTATCTGATACGAGATTTTCTACCATGTACTCTGATAGTCA
TGCTATCTTGGGTCAATTTCTGGATCAACTTTCGAAGTACGCCTGCGCGG
ACCGCCCTCGGTATAACAACTGTATTGACAATCGTTACCATGACGAACAA
CGTCCGGAATAATTCGCCAAGTTCATCAGGGTTGTTTCGAAGTATAGACT
TTTACATGTTGGTATGCAATATGTTTGTTTTTGCCGCTCTTGTTGAAGGG
GCGTTAGTGGGAATGACCGCCCCTAATGAGAAATATGTGAAAAGTACTTT
TAAGAATCAAGTCAAGAAGGTTCTGCGAAATACACGAAATAAAAGCAAGA
AGCTGGATATGGTAAGTAGAATGGAATCTCTATAAATCGAATACCCACAG
GGAACTGAAATTTGTTCGAGTTAAAGAAACTTGCTATGTCAAATGTTTCT
ACTTTGCAGGTATCAAAAGCTTGCGAGCTTTAAGGAACATTTGAAATATA
GAGGGTCGATTTATAAAAATCCTACTGTACTTGTGTGTGAATTGAAGCAC
CGGGATGAAATCTTTCCAGAAATGTAGCCCTGTAAATTTGATCCATCTAC
TTCCATTTGTTCATCTAATTTATTTAAAATTTGCCGTAAACCCGATATTG
GTGACGAAAGGTCTTTTAGAATGTTTTTAAAAGAAAGAGCTTTCTAGATA
TTGTTGTTCAAATCCTCTATTAAGAGATAGCCCGCGTTTTCTTAATCGTG
GAGAGTGTGTCGTAACATTATTGCATTATCTAGCACCCAGATGCAAAAAT
TTTCATCCGACACGCTAAAACTCTGGAGGTCGGAAAATTTTTCAACATCT
GGAAGGTTTACATTGCAGAATTTTGCAAGACCACGTCAAGAATTTTGCAG
CCGGAGGTCTGGTAACCCAGCCCTCGTTTTTGGGGATTGGCTGGTCCAAC
CGAAATATTTATACCTTCCCGCACAGGAAGGCTGTTGAACCTGACTGGGG
ATGCGGCACATCAAAGGCTGACTATCATTTCTCTCCGATGGGAAATTGAC
CCGATCCTTTAGAGCTTTAACGTGGGCGGCTGCTAATCCACCATCGGAAT
ATCAGATAAATGATTGCACTGCTTCTTGTCTCATTAGGCGGATGTAGTGA
AGAGGCGATTAAAAGAAGAGAGTGAAAAGGAGAAAGAAGAAGAAGAAGAT
GAAGAGAAAATCACATCCACAATCATCCAACGCGTTCGACCAATCACAAC
AGAGACATTCAAACTCGGCCCATTCCACTTTTACAAAGGAGAAATTCATA
TCATTGATCGCATTTGTCGATTTTTATTTCCTTTTCTTTTTCTTGTATTC
AATTTTACCTTCTTCATTTTTCATATGTTGAAAGATGAAAGTGTTTTGTA
AATATAGTTCAATAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058878-exon-scaffold_314-1575043694:277971..278079 | TCONS_00058878-exon-scaffold_314-1575043694:277971..278079 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1575043694:277177..277280 | TCONS_00058878-exon-scaffold_314-1575043694:277177..277280 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1575043694:276407..276477 | TCONS_00058878-exon-scaffold_314-1575043694:276407..276477 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1575043694:275834..276063 | TCONS_00058878-exon-scaffold_314-1575043694:275834..276063 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1575043694:274467..274549 | TCONS_00058878-exon-scaffold_314-1575043694:274467..274549 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1575043694:272569..272972 | TCONS_00058878-exon-scaffold_314-1575043694:272569..272972 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1575043694:271512..271792 | TCONS_00058878-exon-scaffold_314-1575043694:271512..271792 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1510915933:277971..278079 | TCONS_00058878-exon-scaffold_314-1510915933:277971..278079 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1510915933:277177..277280 | TCONS_00058878-exon-scaffold_314-1510915933:277177..277280 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1510915933:276407..276477 | TCONS_00058878-exon-scaffold_314-1510915933:276407..276477 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1510915933:275834..276063 | TCONS_00058878-exon-scaffold_314-1510915933:275834..276063 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1510915933:274467..274549 | TCONS_00058878-exon-scaffold_314-1510915933:274467..274549 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1510915933:272569..272972 | TCONS_00058878-exon-scaffold_314-1510915933:272569..272972 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1510915933:271512..271792 | TCONS_00058878-exon-scaffold_314-1510915933:271512..271792 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1491911889:277971..278079 | TCONS_00058878-exon-scaffold_314-1491911889:277971..278079 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1491911889:277177..277280 | TCONS_00058878-exon-scaffold_314-1491911889:277177..277280 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1491911889:276407..276477 | TCONS_00058878-exon-scaffold_314-1491911889:276407..276477 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1491911889:275834..276063 | TCONS_00058878-exon-scaffold_314-1491911889:275834..276063 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1491911889:274467..274549 | TCONS_00058878-exon-scaffold_314-1491911889:274467..274549 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1491911889:272569..272972 | TCONS_00058878-exon-scaffold_314-1491911889:272569..272972 | Clytia hemisphaerica | exon |
TCONS_00058878-exon-scaffold_314-1491911889:271512..271792 | TCONS_00058878-exon-scaffold_314-1491911889:271512..271792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_314 | supercontig | scaffold_314:271512..278079 - |
Blast
BLAST of TCONS_00058878 vs. Swiss-Prot (Human)
Match: GLRA2 (Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=1 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.714e-39 Identity = 95/280 (33.93%), Postives = 136/280 (48.57%), Query Frame = 3
Query: 222 PIQATVSIFTNDMIPRENLDMHFTYDFFFTIEWNDYRLKHNLSSSNDTVLPFDYTILKDIWAPNLYFAQTKDGLVPDFPQPNVMVTIAKDGDVRLNYKIILTLFCAMDLTFYPFDIQKCNLNLESC---------QW---------KGLI----------------------------IEFTFYRNAPLYLIRDFLPCTLIVMLSWVNFWINFRSTPARTALGITTVLTIVTMTNNVRNNSPSSSGLFRSIDFYMLVCNMFVFAALVEGALVGMTAPNEK 923
P+ T +IF N M + + F +WND RL + S D L D ++L IW P+L+FA K D N ++ I+K+G V + ++ LTL C MDL +P D+Q C + LES +W +GL ++F R YLI+ ++P LIV+LSWV+FWIN + PAR ALGITTVLT+ T ++ R + P S + ++ID +M VC +FVFAAL+E A V + K
Sbjct: 70 PVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAY--SEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYV-KAIDIWMAVCLLFVFAALLEYAAVNFVSRQHK 346
The following BLAST results are available for this feature:
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