TCONS_00058880 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058880
Unique Name	TCONS_00058880
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1329

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_314:271512..278084-

transcript sequence

>TCONS_00058880 ID=TCONS_00058880|Name=TCONS_00058880|organism=Clytia hemisphaerica|type=transcript|length=1329bp
caaTACTGATTTCTGTTAGACTTTTCGATGGTTTGTAGTAAGCTCGTCAT
ACAATATGCAGTTatggatgaaaatgaagattggATTTTTATACCTCTGG
ATGAACATGTGCTGGATTTCTCTCGTAAATGGAGTTGATGAATCAGAGCT
TTCACCGATACTCAAGAAAATTTTGGATCCATTGATCTATGAAAAAAGTT
CAATACCAATCAAGGATGatCAAAAGCCGATCCAAGCGACAGTGAGCATT
TTCACTAACGATATGATACCACGTGAAAATCTCGATATGcattttacaTA
CGATTTCTTCTTTACAATCGAATGGAATGATTACCGTTTGAAACATAACC
TGTCAAGCTCCAATGATACTGTTTTACCTTTCGATTACACCATTTTGAAA
GACATCTGGGCACCGAATCTCTACTTCGCACAAACGAAAGACGGACTTGT
ACCAGACTTCCCACAGCCGAATGTCATGGTCACGATCGCCAAGGACGGTG
ATGTGCGGTTGAATTATAAgaTAATATTGACGTTATTCTGTGCTATGGAT
TTGACGTTTTATCCGTTCGATATTCAAAAGTGTAATTTGAATCTGGAATC
GTATTCATATGGTTTGCATTTCCTGAACATCAGCTGGGGATACTTCATAT
ATGACAAAGAAAGAGTGCGAACACAAGATTTCAATAAAGTTGAAATCAAA
ACTGATCAGACAGTCTCAACCTATCACACTATTGTCATGCTATCTTGGGT
CAATTTCTGGATCAACTTTCGAAGTACGCCTGCGCGGACCGCCCTCGGTA
TAACAACTGTATTGACAATCGTTACCATGACGAACAACGTCCGGAATAAT
TCGCCAAGTTCATCAGGGTTGTTTCGAAGTATAGACTTTTACATGTTGGT
ATGCAATATGTTTGTTTTTGCCGCTCTTGTTGAAGGGGCGTTAGTGGGAA
TGACCGCCCCTAATGAGAAATATGTGAAAAGTACTTTTAAGAATCAAGTC
AAGAAGGTTCTGCGAAATACACGAAATAAAAGCAAGAAGCTGGATATGGC
GGATGTAGTGAAGAGGCGATTAAAAGAAGAGAGTGAAAaggagaaagaag
aagaagaagatgaagagaAAATCACATCCACAATCATCCAACGCGTTCGA
CCAATCACAACAGAGACATTCAAACTCGGCCCATTCCACTTTTACAAAGG
AGAAATTCATATCATTGATCGCATTTGTCGatttttatttccttttcttt
ttcttgtatTCAATTttaccttcttcatttttcatatgTTGAAAGATGAA
AGTGTTTTGTAAATATAGTTCAATAAAAC

Run BLAST on NCBI

transcript from alignment at scaffold_314:271512..278084-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058880 ID=TCONS_00058880|Name=TCONS_00058880|organism=Clytia hemisphaerica|type=transcript|length=6573bp|location=Sequence derived from alignment at scaffold_314:271512..278084- (Clytia hemisphaerica)
CAATACTGATTTCTGTTAGACTTTTCGATGGTTTGTAGTAAGCTCGTCAT
ACAATATGCAGTTATGGATGAAAATGAAGATTGGATTTTTATACCTCTGG
ATGAACATGTGCTGGTATGTGCCAAACTCCTACCCAGTCCCCAGCTCACA
GCTCTTTCAGCATTTACGATTTTACCGCCTTTAAGTCCAGAGTGGGTAGG
AGTCAGTAAGAAATTTTACATTTTTAGCTGAAAGGAGAGGGTCCAATAAG
TGTGAGACAGGGGTGAGTCGTCACCAATCCCTCCTATTTTTTCATCCTTT
TTCCACATCTTGAAAGTTCGATTATGCATATTAAATTTGCGATTCAACTA
GGTTGCTTTTCAAAATGTCACCGTCAATTAACTAAAGTTCCATCTTTGCA
AAACTAAGAATCGAAATGGTGCCTGATACCTGGGATTCTAGTAAACTTAC
TTCCACAAGTCATGTCATCAGTCTATTAAAAAGTCTTTATTGGATGACAG
AGACATGATACACACAGTTTACCTTGCTGATACATCTCAGAGAAATTCTT
CAATTAGAGGACACATCGTAATAAAGGGCCGCTTCATAGTTAGGCTGCAT
GCATCCCCAAATTATTTTTGATACATCAAAACTTATCAGAGGGGATGTGT
GCAGCCTACTTCATAGTATGTGTCTTGGCAGAATCTTTTTTGAGAAGGGC
TTACTAGAAAAGGGAAATATAATCAACCTATCTGTTTCATTGAAGAAGGT
TACTAATATAACAAATAACCGCGTTCATCAGAGGGATGAATTCTTATATT
ACAGGATTTCTCTCGTAAATGGAGTTGATGAATCAGAGCTTTCACCGATA
CTCAAGAAAATTTTGGATCCATTGATCTATGAAAAAAGTTCAATACCAAT
CAAGGATGGTAAGAATGTTTTCATCGTAATCCATAAGTCCCTTATCTATC
TTTTATGTAGATATATTTCTACGATGCAAATTTCCCAAGAGATTTCAACC
TGTGCTTTCAAATCAGACTTCAGTAACCTGAGATTAGATTGTGATTGTTT
TCTGCACATCACGCTGAAGCTCTAAAGAGATGTGTCCAAATTGACAAAAA
ACGTCAAAATAAGGTCTTCTATCTTACATCCATGATGGGTGGCGTAGTGG
TATATGATACCCACGTATCATCCTTGACTCCCGCCTGGGAGGCCCGAGTT
CGATACCCACCGTGTCTCTACGATTCACTTGGCAAGTGAATATACCTTCG
CCCGGGTCAACCCATGCCATGTGAGGGGATAGGGTACAATTACTCTGATA
CAAGAGTGTGGGTAGATTAGACAGACATTGTGACGTGCCTTGACACTCAT
AAGGTTCGGCCTCGCGTGAGCATCGCTCTCCCGCAGTGTCGTTTGAGTGT
TATGGTATACGCCATGGCTTGGCATGAGTCTGTCAAGTCGCAGTGTCTGT
CAGCGCCGTGATTCCTACTCCTTCGTGGGTAGGACCCATCCCGAATGCAT
TCGGAGGGCTCATATCTATTCTATCTATATTCTATCTTACATCCATATAG
TATCGTTAAAATAATTTATCAGTTACAATATACTAAAATCGTAAAAATTT
TATTTAGATCAAAAGCCGATCCAAGCGACAGTGAGCATTTTCACTAACGA
TATGATACCACGTGAAAATCTCGATATGGTATGTCTGTTTATTTTTTGCT
TAGTTTTCTACTACTTTTTATATACTTGTTATATATGACTGTTATGGCCT
TCATCCAATTTTCTTGGTGATTGTCTTACGGTTAAGTTTCACAGCTTTTG
CAGCAATTTGACCGACTGAGGTAAAGTAATTGAATGATTCTGTTTACGGA
CAACCAAAACAGATTCTCCAGGATAGACAGTAGAGCAGACAAGATCTACT
CATGCATTTTCTTTCAATTTTTAAGCTGATCCTGATTTCTTACGTGTTAG
TGCTACGACTTACGTATGTTCTATAGTCGTGGATATGATTAGAAAATACA
AACTATTTCTCAATTTTTCAGCATTTTACATACGATTTCTTCTTTACAAT
CGAATGGAATGATTACCGTTTGAAACATAACCTGTCAAGCTCCAATGATA
CTGTTTTACCTTTCGATTACACCATTTTGAAAGACATCTGGGCACCGAAT
CTCTACTTCGCACAAACGAAAGACGGACTTGTACCAGACTTCCCACAGCC
GAATGTCATGGTCACGATCGCCAAGGACGGTGATGTGCGGTTGAATTATA
AGTAAGTAAGCGGTTAAACTTTCATTAAAGTTTATGATGAATATATATAG
TCTAGAAGTATAAAACCTTCAACTACTCAAAATGGAAACAATAAAGACAA
AAACCCACAAAACAAAAAGACAATACAAATACAACAAAAATCTAGTATGA
ACATTCACAGGAAATCAATCAGGTTGGAGTAGAAAAGGAAAATATGTATA
TATAATATATATATAAAAATATTGAAACTATGATCACTTTGATCATTGAG
AAAAATAATGGAATGGGCTAGACTTATACCGAAAAGAAGGTGAACAGAGC
AGAATTAGGGCACAAAGAAGGAGTTTCATTTCAAAAAATATTCTAGATTG
ATTACTTGGTTGGATGAAAAATAATGTTATGTTAAACGGCGGGTACGCTT
ATAAGAGTACCAAGAATAATACTATAGTCTCTTAAGGGCTCTGACCATAG
TCAGAAAATTGATTTTAGTATCTGAAAGAATTGCCTTTATAAATTACTTT
TTAATCAAACCCCTTCAGAGAAATTAAGATCTTAATTGCAAAAATGACGT
TATGAACTTTAAAAAGACGTTAATAATATGTTGCATCACGTTCTTTTATA
AAAAGTGCTAAGTTTTAATGGGTAATTAACCTTTTTGTTTCGAACTTTTT
TCAAACTGTCCGCAAAGAATTGATTTTAAATGACTATTTTAAATTTTGCG
GAAAACTTTTCTAAAAAGATGTGTCAAAAGTGATGACTATTTTTTTAAGC
AAAATCCAGATGAAAAATTGATGAAAAACCACTATTTTGAAGATTTCGAG
AGAAAGAAGCATTTACAAAAATGTTCCGCAAAAATTTTTATTGTTCGGTA
AAAGATACACCATCTACTGCGAAAAAATTTTCAAAATGTTTTTTCTTTGC
CGAAACTAAGCTCTTCAAAGTTGAAATACTCCTCCTCGCAAAAGTCTTCA
TTTTCTTCTTCATCAAATTTTTTCAATGAATGAGTCCTTTTTGAATTTTC
AGATTCAGGAATAGTTTGTCTAACAGAATATGTATAACATGCCATAGTTT
TGTTGGTTAAATCAGTCAAAAAACACATTTTAAACACGGCAATTATGAAA
AATTCACTATGGTCAGAGCCCTTAAATGATGGGGAGTCAAGAATGAGCAC
TTGGGTTGGAAAAATTTCTCAAATACTAAATTGCCGGGTTTGGAAATGAG
GAACTTATGGAAATACTTTTTCACAATTAAATAAGCGAGCGATTAGGGAG
TATTTTTAATCTCAGACAATCAATTTATTTTTCAGGATAATATTGACGTT
ATTCTGTGCTATGGATTTGACGTTTTATCCGTTCGATATTCAAAAGTGTA
ATTTGAATCTGGAATCGTGTAAGAATTTATTGTTTATAAATATGGTGTCA
AAATCATCTCCAAACCTCACAGGTTTTGATAAAAACGAAGAATTACATAC
AGGGGGCATGTTTGATAATGCCTCCCATCTACAGACAAGAGGGAAAGGAA
AAATTGATAACAGATCGCAACCTCGTCCCCGTGTATCCCAGGCTTTATTC
ATGTTACTGATTGACGCGTTCGAAAACCAGACAATGCCAGGGTATTATCT
AGCACTACCAGTAAGCATCAAAAAGCTGATAATACGCAGGGAACGAGGTT
GAACAGATCTTTTTATTTCTTATGTTAAAACAATACGTTGGGCCATTTAC
AGTATAAAGAAGAATTTTTCCAAAAGTAATAAAATCCTGTTTTGCAAGGT
TCTTTATGGCACTCGGAAATGTTTAGATCGAGAGATTTACAAAGCTGAAA
AATGCTTTGAGGGATGCTTATATTCTAAGCAAAATTTTATTAGAGAAATT
TCAAAAATCCTGCCAATAACAAACAAATTCTGAAAATGAAGGCTCAAAGT
AATGTTTAGCATACGCTTAAATTTTTGCCATATATGAGCGCCTAGATACG
CTTATAAGCGCAATGCTTATAAAAAAAAATTTGAAGAATTACTTTTTTTG
TCCCAAAAAGGGACCCTGGATGGACATAAAATGAAATGACCCATTTAAGT
TGCATAAGCTTACCGGCTATTTTTTGTTAACATTAGATTCATATGGTTTG
CATTTCCTGAACATCAGCTGGGGATACTTCATATATGACAAAGAAAGAGT
GCGAACACAAGATTTCAATAAAGTTGAAATCAAAACTGATCAGACAGTCT
CAACCTATCACACTATTGGTCAGTTCATACTATCTATTTTTTGATTAATT
AAATTTAGGTTTATTATCCTCAGATTCTTTGCAAAATGTTTACTAGAATG
GCTCATAGAGATACCCTCAAAATATCTCTCAAATTTCATTAAAAATGCCA
ACTTTGAGTTTTTGGCTTTCTTCTGTTTCTCCCATCTATTTGCTTACCTT
CACTCATAAGATTAGTAAGATATGAAAAGCTGTTAATAATACACGTTTTT
CTTTATTATAAGGAACACGTTTATAAGGAACTCGAGGCTAAAAATGGTCC
AAAAAATAAGGAATTGTTAAGGAACTGCTCAGGCTGAGAATAAGAAAACA
AGTTTTAAGGAATCCAATTTTTGCGAATCCANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTATGTAAATAAGGAACTCGATAAGGAAC
TTTGAGGCTGAAATTCTCTGTAAAAATAAGGAACTCCAGGCTCAGAGCAA
AAGTTAAGGTTCCTTATAAAAAAACGTGTATCCATCCATGTCGATTCATC
ACGATTTTTCAGGTCAATGGAAAGGTTTAATTATCGAATTCACATTTTAT
CGAAACGCACCTTTGTATCTGATACGAGATTTTCTACCATGTACTCTGAT
AGTCATGCTATCTTGGGTCAATTTCTGGATCAACTTTCGAAGTACGCCTG
CGCGGACCGCCCTCGGTATAACAACTGTATTGACAATCGTTACCATGACG
AACAACGTCCGGAATAATTCGCCAAGTTCATCAGGGTTGTTTCGAAGTAT
AGACTTTTACATGTTGGTATGCAATATGTTTGTTTTTGCCGCTCTTGTTG
AAGGGGCGTTAGTGGGAATGACCGCCCCTAATGAGAAATATGTGAAAAGT
ACTTTTAAGAATCAAGTCAAGAAGGTTCTGCGAAATACACGAAATAAAAG
CAAGAAGCTGGATATGGTAAGTAGAATGGAATCTCTATAAATCGAATACC
CACAGGGAACTGAAATTTGTTCGAGTTAAAGAAACTTGCTATGTCAAATG
TTTCTACTTTGCAGGTATCAAAAGCTTGCGAGCTTTAAGGAACATTTGAA
ATATAGAGGGTCGATTTATAAAAATCCTACTGTACTTGTGTGTGAATTGA
AGCACCGGGATGAAATCTTTCCAGAAATGTAGCCCTGTAAATTTGATCCA
TCTACTTCCATTTGTTCATCTAATTTATTTAAAATTTGCCGTAAACCCGA
TATTGGTGACGAAAGGTCTTTTAGAATGTTTTTAAAAGAAAGAGCTTTCT
AGATATTGTTGTTCAAATCCTCTATTAAGAGATAGCCCGCGTTTTCTTAA
TCGTGGAGAGTGTGTCGTAACATTATTGCATTATCTAGCACCCAGATGCA
AAAATTTTCATCCGACACGCTAAAACTCTGGAGGTCGGAAAATTTTTCAA
CATCTGGAAGGTTTACATTGCAGAATTTTGCAAGACCACGTCAAGAATTT
TGCAGCCGGAGGTCTGGTAACCCAGCCCTCGTTTTTGGGGATTGGCTGGT
CCAACCGAAATATTTATACCTTCCCGCACAGGAAGGCTGTTGAACCTGAC
TGGGGATGCGGCACATCAAAGGCTGACTATCATTTCTCTCCGATGGGAAA
TTGACCCGATCCTTTAGAGCTTTAACGTGGGCGGCTGCTAATCCACCATC
GGAATATCAGATAAATGATTGCACTGCTTCTTGTCTCATTAGGCGGATGT
AGTGAAGAGGCGATTAAAAGAAGAGAGTGAAAAGGAGAAAGAAGAAGAAG
AAGATGAAGAGAAAATCACATCCACAATCATCCAACGCGTTCGACCAATC
ACAACAGAGACATTCAAACTCGGCCCATTCCACTTTTACAAAGGAGAAAT
TCATATCATTGATCGCATTTGTCGATTTTTATTTCCTTTTCTTTTTCTTG
TATTCAATTTTACCTTCTTCATTTTTCATATGTTGAAAGATGAAAGTGTT
TTGTAAATATAGTTCAATAAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037088	XLOC_037088	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_314	supercontig	scaffold_314:271512..278084 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.43625e-07	0.429023	1.61396	0.00149426	0	0	0	0.0762529	0.293625	0.363703	0.531311	1.2648e-07	0	0.899558	0.17987	0.126541	0	0	0	0.563112	0	0.985949	0.000103901	1.16699e-07	0	9.44924e-06	0	0	0	0

Blast

[Close]

BLAST of TCONS_00058880 vs. Swiss-Prot (Human)
Match: GLRA2 (Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.012e-39
Identity = 96/280 (34.29%), Postives = 140/280 (50.00%), Query Frame = 2

Query:  227 PIQATVSIFTNDMIPRENLDMHFTYDFFFTIEWNDYRLKHNLSSSNDTVLPFDYTILKDIWAPNLYFAQTKDGLVPDFPQPNVMVTIAKDGDVRLNYKIILTLFCAMDLTFYPFDIQKCNLNLESYSYGLHFLNISW--------------GYFIYDKER--------VRTQDFNKVEIK--TDQTVSTYHT--------IVMLSWVNFWINFRSTPARTALGITTVLTIVTMTNNVRNNSPSSSGLFRSIDFYMLVCNMFVFAALVEGALVGMTAPNEK 970
            P+  T +IF N         M +  + F   +WND RL +  S   D  L  D ++L  IW P+L+FA  K     D    N ++ I+K+G V  + ++ LTL C MDL  +P D+Q C + LES+ Y ++ L   W                FI  +E+          T  F  +E+K   ++ +  Y          IV+LSWV+FWIN  + PAR ALGITTVLT+ T ++  R + P  S + ++ID +M VC +FVFAAL+E A V   +   K
Sbjct:   70 PVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAY--SEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYV-KAIDIWMAVCLLFVFAALLEYAAVNFVSRQHK 346

The following BLAST results are available for this feature:

BLAST of TCONS_00058880 vs. Swiss-Prot (Human)

BLAST of TCONS_00058880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GLRA2	4.012e-39	34.29	Glycine receptor subunit alpha-2 OS=Homo sapiens G...	[more]

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TCONS_00058880 (transcript) - C. hemisphaerica