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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058887 ID=TCONS_00058887|Name=TCONS_00058887|organism=Clytia hemisphaerica|type=transcript|length=1951bp
acagtcgggtgctgtcgggtgttttgtcgggtgctgaaatttctaaattt
gcgaaaacacccgacaaatagtgcacccgacagtcgggtgcttaAAATTC
CTAACTTAGTGAGAACACCCGACAATCAACACCCGACACCGCCTGATGGG
CATTTGGCAGATTTACGCCCTATACTATTTCCCGCCATCTTTTCCGATGC
CGTAGGCGTCAGTCAAATGATATGAACATCATCGGCTCTTATAAGGCACT
ATTTCTCGTCACTGGCGGAAGAAAAGGGCCGGCGTGTAAACTGGATCAGC
GATGGGTTTAATAGAGATCTTCGAGTCCTAATCGGTGAAGGTGAAAAAAG
TTTCGGGGGcaggaaagtgacgaaaattctGAGGTAGATAAAAATAGGCT
TCGGCGTAATAAGGGCAATTATCAcccaaactcgaacccagtcccttagt
ttgcttttttaattttgatatagCGCTCTGTTATCCGTGGAACGATTGTA
TCGCGTCCataagtaaaattaaaaagtgcgatgcaagtggctctgggtac
gagttTGGGCGCAACCTAGTCCCGTGTATCCTAGGTTTTTTTTACGTTAC
TAACTACTGATCGGTACGATAGAAACGCCATACCTGACATTAACTTTTAC
CTCTGAGGGCCAACCTCTCATGTCAACTAAATCTAAATAtaattcttttt
atttagaGTCGCAAATAAGAGAAAATGAATTAAATAGCGGAACAGTCTTA
CATTCTGATGACAAAACACACGGACGTACTGGTTTGTCCAGGTAAGACGT
TAATTACCTTTAATGTTGTGTTACAAATAGCTTTGTCTCATGTGATATTT
AGTTTCATAATGACGTAATttccatggcgttctaaatggCTTGTAGAGAT
GCGTAATTCCGGAGAGAGGAAtggtttttttcaaattagttACTCTATGg
atacttttaaaaatattttatcaggCTTataatctcagacataatgcaAT
GGATATTAAAGCTGTGGATAGACAAGAGATTCAAAATCGTGAAGGGTGGT
AGTCTATTAATAAATCTTTCTACTTTCTATCTCCTTCAGAAAGAAAACAG
AGGGAATGCATTGATGATCAAATGGCCTTATATATaatttattatatttt
atatatttttaattgtatatatttcaaagattgtctgtaagaccatgttc
agacgttacggtctCGTATCATTCCGGTATGGTTTCCGTGAGTGTTTCCG
CGatagtgttcatattggtttcggagcgtttcggagcaagaaaacggagc
agttctgttccgatgaaaatagtggagcgaaaccgttccGATCTgctttg
ctttgtaacgtcttctttttttctttttcaaatttcggcCTTATTCACAC
TTGTTTCAGAACCGTTTCGTTTTGGAACGATACGGAACCGTGACGTCTAG
AACATGACCTATATTATAAAAAGGTTGTTGTccaattttcttcttttgag
cAACACACACGTTGTCCCCAGCCATCCAAATAGTTTGTATGTACCGTACG
TATGTACGCAATGGTTGTATAAGAATGGTGGTGGTACGCTAAAAAGATAG
AACAAGAAATTCGGCATACAAGTAGCTTTTCGGTACAAAACGAAAACCCA
GGTGATATATAGCGTCCAGTTGACGAAGCTACTCAGTCAGCTCAGATAAA
TTGAACGTCACTTAAGAGTTTAATGATACACGATTTTCAGGTAGGTAAAA
GAGGGGAAACCTACCTAGATAAACTTAATACCCAGAATGGATTTTTGCCT
ACCTAAGTACTAGTGAATGTTGCGTTGATTTGGTGACTCGTTGATGAAAC
ATCTCTATTTGTCTTCATCGTCCTGTCGTTGTTTTACAAGTTGCTCATCA
CgcatgaatgaataaaaagaaaaaaacgttaATCCTTAATCCGTGAACTT
C Run BLAST on NCBI transcript from alignment at scaffold_314:379145..381300- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058887 ID=TCONS_00058887|Name=TCONS_00058887|organism=Clytia hemisphaerica|type=transcript|length=2156bp|location=Sequence derived from alignment at scaffold_314:379145..381300- (Clytia hemisphaerica)
ACAGTCGGGTGCTGTCGGGTGTTTTGTCGGGTGCTGAAATTTCTAAATTT
GCGAAAACACCCGACAAATAGTGCACCCGACAGTCGGGTGCTTAAAATTC
CTAACTTAGTGAGAACACCCGACAATCAACACCCGACACCGCCTGATGGG
CATTTGGCAGATTTACGCCCTATACTATTTCCCGCCATCTTTTCCGATGC
CGTAGGCGTCAGTCAAATGATATGAACATCATCGGCTCTTATAAGGCACT
ATTTCTCGTCACTGGCGGAAGAAAAGGGCCGGCGTGTAAACTGGATCAGC
GATGGGTTTAATAGAGATCTTCGAGTCCTAATCGGTGAAGGTGAAAAAAG
TTTCGGGGGCAGGAAAGTGACGAAAATTCTGAGGTAGATAAAAATAGGCT
TCGGCGTAATAAGGGCAATTATCACCCAAACTCGAACCCAGTCCCTTAGT
TTGCTTTTTTAATTTTGATATAGCGCTCTGTTATCCGTGGAACGATTGTA
TCGCGTCCATAAGTAAAATTAAAAAGTGCGATGCAAGTGGCTCTGGGTAC
GAGTTTGGGCGCAACCTAGTCCCGTGTATCCTAGGTTTTTTTTACGTTAC
TAACTACTGATCGGTACGATAGAAACGCCATACCTGACATTAACTTTTAC
CTCTGAGGGCCAACCTCTCATGTCAACTAAATCTAAATATAATTCTTTTT
ATTTAGAGTCGCAAATAAGAGAAAATGAATTAAATAGCGGAACAGGTAAT
CATTTTTAATTTGATATTTACATTTTAGTCGTAAAAAAATTGGCGCGTCT
TTCTTTTGATTCTCTACTTTGATCATATTAATGTTTCGATATTCTTAAAT
TCCAGCCTACACTCGATATGGTCAATCTATTTCTCCGTGTTTAGGTTTGA
GGCATGACATCCCGCTCGCTTTTTCCTCTCTTCTTTTCTCCGTATTTTAG
TCTTACATTCTGATGACAAAACACACGGACGTACTGGTTTGTCCAGGTAA
GACGTTAATTACCTTTAATGTTGTGTTACAAATAGCTTTGTCTCATGTGA
TATTTAGTTTCATAATGACGTAATTTCCATGGCGTTCTAAATGGCTTGTA
GAGATGCGTAATTCCGGAGAGAGGAATGGTTTTTTTCAAATTAGTTACTC
TATGGATACTTTTAAAAATATTTTATCAGGCTTATAATCTCAGACATAAT
GCAATGGATATTAAAGCTGTGGATAGACAAGAGATTCAAAATCGTGAAGG
GTGGTAGTCTATTAATAAATCTTTCTACTTTCTATCTCCTTCAGAAAGAA
AACAGAGGGAATGCATTGATGATCAAATGGCCTTATATATAATTTATTAT
ATTTTATATATTTTTAATTGTATATATTTCAAAGATTGTCTGTAAGACCA
TGTTCAGACGTTACGGTCTCGTATCATTCCGGTATGGTTTCCGTGAGTGT
TTCCGCGATAGTGTTCATATTGGTTTCGGAGCGTTTCGGAGCAAGAAAAC
GGAGCAGTTCTGTTCCGATGAAAATAGTGGAGCGAAACCGTTCCGATCTG
CTTTGCTTTGTAACGTCTTCTTTTTTTCTTTTTCAAATTTCGGCCTTATT
CACACTTGTTTCAGAACCGTTTCGTTTTGGAACGATACGGAACCGTGACG
TCTAGAACATGACCTATATTATAAAAAGGTTGTTGTCCAATTTTCTTCTT
TTGAGCAACACACACGTTGTCCCCAGCCATCCAAATAGTTTGTATGTACC
GTACGTATGTACGCAATGGTTGTATAAGAATGGTGGTGGTACGCTAAAAA
GATAGAACAAGAAATTCGGCATACAAGTAGCTTTTCGGTACAAAACGAAA
ACCCAGGTGATATATAGCGTCCAGTTGACGAAGCTACTCAGTCAGCTCAG
ATAAATTGAACGTCACTTAAGAGTTTAATGATACACGATTTTCAGGTAGG
TAAAAGAGGGGAAACCTACCTAGATAAACTTAATACCCAGAATGGATTTT
TGCCTACCTAAGTACTAGTGAATGTTGCGTTGATTTGGTGACTCGTTGAT
GAAACATCTCTATTTGTCTTCATCGTCCTGTCGTTGTTTTACAAGTTGCT
CATCACGCATGAATGAATAAAAAGAAAAAAACGTTAATCCTTAATCCGTG
AACTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058887-exon-scaffold_314-1575043694:380556..381300 | TCONS_00058887-exon-scaffold_314-1575043694:380556..381300 | Clytia hemisphaerica | exon |
| TCONS_00058887-exon-scaffold_314-1575043694:379145..380350 | TCONS_00058887-exon-scaffold_314-1575043694:379145..380350 | Clytia hemisphaerica | exon |
| TCONS_00058887-exon-scaffold_314-1510915933:380556..381300 | TCONS_00058887-exon-scaffold_314-1510915933:380556..381300 | Clytia hemisphaerica | exon |
| TCONS_00058887-exon-scaffold_314-1510915933:379145..380350 | TCONS_00058887-exon-scaffold_314-1510915933:379145..380350 | Clytia hemisphaerica | exon |
| TCONS_00058887-exon-scaffold_314-1491911889:380556..381300 | TCONS_00058887-exon-scaffold_314-1491911889:380556..381300 | Clytia hemisphaerica | exon |
| TCONS_00058887-exon-scaffold_314-1491911889:379145..380350 | TCONS_00058887-exon-scaffold_314-1491911889:379145..380350 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:379145..381300 - |
Blast
The following BLAST results are available for this feature:
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