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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058890 ID=TCONS_00058890|Name=TCONS_00058890|organism=Clytia hemisphaerica|type=transcript|length=1695bp
GAAAGCTAAACACTCGGTAATTTTCAGGAACTTGTGATTTTGACTTGAAG
ATGATGAGATTATTACAAATATTGAGGAAAGGAAAAAGCAAAATACCAGG
AACTTTTCTTTTCACCAGTTCGATTCGATGGAAATCTTATCAAGCTCTTC
GAAATGCATTATCTGCTGAAGAAATTTATTCAGAGCTGATTAAAGGTAAC
AGAGGAGCTTTAGCTAAAGGTATTACTTTAACAGAATCGACAAGACAGGA
TCACATTGATGAAGCCCATAAACTTTTACATTTAACTTTGGAGTATTTAA
AGAATAAACAAACTGAGAAACCAACTTTTCGCATTGGACTAACCGGTTCG
CCTGGTGCTGGGAAAAGTACCTTAATTGAAACTCTTGGAAAACAATTAAC
TTCGTTGGGTCATAAAGTTGCTGTTTTGGCTGTCGATCCTTCTTCTGCCA
AAACAGGTGGATCGCTGCTTGGTGATCGAACTCGAATGGTCGAACTTTCT
CATGACCCAAATGCTTTTATACGACCTTCCCCCTCGTCAGGGACTTTAGG
TGGTGTCACAAGGAGAACAAATGAAGCTATTGTTTTATGTGAAGGCGCCG
GTTATGACATTATTCTTGTCGAGACAGTTGGCATCGGACAATCTGAATTT
GCTGTTTCGAACATGACGgatatgtttgttttgattatacCTCCTGGTTC
AGGGGACGAGTTACAAGGGATTAAGAAAGGTGTTGTTGAGATGGCTgact
tagttcttataaacaaaGCAGATGGAGATTTATTACCAGCCGCTAGAAAA
GTTCAAACTGAATATATGAGTGCTTTGAAAGTATTACAAAGACCAGGTGC
TAAATGGACTCCTAAGGTTTATCCAGTTTCAGCTCTTCATAATGAGGGTC
TTGATAAAGCTTGGTGGAAAATAGAACAGTATAAAAGCAAAATGTTAGAA
GATGaaacttttcttcaaagaaGAAAACACCAATATAAATCATGGATGTG
GAATTATGTTCAAGACAATATCATGGAACGATTTCTATCCAATGAGAAAG
TTAAAAATCGTATCAAGCATTTTGAGATACTGGTTGAAAATGAACAGGTT
CATCCCGCATTTGCTGCTGATGAACTGTTGAAGATTTTtacaaatgaaaa
ttaattattttatttttagatttcaaataGCAAAGATTATCGAGAGTGTG
ATTGCCGAGGGTTTtgttcaaacttcttttccgtAAATAGTTTCAATGAC
ATCTAACTTCCTAGTTTGTATTTCAACATAACGTAATTATTTCCTTCCCA
ATTGGTTAAAAACGCATTTTTGACGAGGAACCTTCCTTGTCTGTATCACT
CAGATGAGAtgtgtttttataagatactttaataattggtcatttgaagt
aataaaaatgacgcgttctttagaaaaagtaacaaaattgttttattact
ggttaacgaccaaacaagtcaaataagagcttgtaaaaactacgTCTCGT
CCCGTATCACTCGACCCTACACATCATTTTATTCGTGGTAACATAAAGCA
CAACTTATTGtaactaaaaattttaaatgttaaTTTTCTTGTATAGTTTt
ataaaaagctttttaattttgatattgttttcatatctttagaatatTTT
ACCTAGAGTTTTCTTTGAGAGTTAAAAacgaaatatttcttttca Run BLAST on NCBI transcript from alignment at scaffold_314:437193..439159- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058890 ID=TCONS_00058890|Name=TCONS_00058890|organism=Clytia hemisphaerica|type=transcript|length=1967bp|location=Sequence derived from alignment at scaffold_314:437193..439159- (Clytia hemisphaerica)
GAAAGCTAAACACTCGGTAATTTTCAGGAACTTGTGATTTTGACTTGAAG
TAAGCAAAATTATTACTTTTATTGGGTGAAACATTGATCTTCCCTGTTAT
TTTTTACAACAAAAAAATTTGGTAAATTACTTTCTTTTTCAATATTGTGA
AATCAAGTGCGTATTACTTATGGGTAATGAATCAACGGATCCTGCACTAA
TGTACTTCCCAGTTTTCTCAAAGGTAACGAATTGAGAAAACTGGGAAGTA
CATTAGTGCAGGATCCGTTGATTCATTTTTCAATATTGCTCCCCTTCAAA
TTTTGTACTATTTTTTTCCAGGATGATGAGATTATTACAAATATTGAGGA
AAGGAAAAAGCAAAATACCAGGAACTTTTCTTTTCACCAGTTCGATTCGA
TGGAAATCTTATCAAGCTCTTCGAAATGCATTATCTGCTGAAGAAATTTA
TTCAGAGCTGATTAAAGGTAACAGAGGAGCTTTAGCTAAAGGTATTACTT
TAACAGAATCGACAAGACAGGATCACATTGATGAAGCCCATAAACTTTTA
CATTTAACTTTGGAGTATTTAAAGAATAAACAAACTGAGAAACCAACTTT
TCGCATTGGACTAACCGGTTCGCCTGGTGCTGGGAAAAGTACCTTAATTG
AAACTCTTGGAAAACAATTAACTTCGTTGGGTCATAAAGTTGCTGTTTTG
GCTGTCGATCCTTCTTCTGCCAAAACAGGTGGATCGCTGCTTGGTGATCG
AACTCGAATGGTCGAACTTTCTCATGACCCAAATGCTTTTATACGACCTT
CCCCCTCGTCAGGGACTTTAGGTGGTGTCACAAGGAGAACAAATGAAGCT
ATTGTTTTATGTGAAGGCGCCGGTTATGACATTATTCTTGTCGAGACAGT
TGGCATCGGACAATCTGAATTTGCTGTTTCGAACATGACGGATATGTTTG
TTTTGATTATACCTCCTGGTTCAGGGGACGAGTTACAAGGGATTAAGAAA
GGTGTTGTTGAGATGGCTGACTTAGTTCTTATAAACAAAGCAGATGGAGA
TTTATTACCAGCCGCTAGAAAAGTTCAAACTGAATATATGAGTGCTTTGA
AAGTATTACAAAGACCAGGTGCTAAATGGACTCCTAAGGTTTATCCAGTT
TCAGCTCTTCATAATGAGGGTCTTGATAAAGCTTGGTGGAAAATAGAACA
GTATAAAAGCAAAATGTTAGAAGATGAAACTTTTCTTCAAAGAAGAAAAC
ACCAATATAAATCATGGATGTGGAATTATGTTCAAGACAATATCATGGAA
CGATTTCTATCCAATGAGAAAGTTAAAAATCGTATCAAGCATTTTGAGAT
ACTGGTTGAAAATGAACAGGTTCATCCCGCATTTGCTGCTGATGAACTGT
TGAAGATTTTTACAAATGAAAATTAATTATTTTATTTTTAGATTTCAAAT
AGCAAAGATTATCGAGAGTGTGATTGCCGAGGGTTTTGTTCAAACTTCTT
TTCCGTAAATAGTTTCAATGACATCTAACTTCCTAGTTTGTATTTCAACA
TAACGTAATTATTTCCTTCCCAATTGGTTAAAAACGCATTTTTGACGAGG
AACCTTCCTTGTCTGTATCACTCAGATGAGATGTGTTTTTATAAGATACT
TTAATAATTGGTCATTTGAAGTAATAAAAATGACGCGTTCTTTAGAAAAA
GTAACAAAATTGTTTTATTACTGGTTAACGACCAAACAAGTCAAATAAGA
GCTTGTAAAAACTACGTCTCGTCCCGTATCACTCGACCCTACACATCATT
TTATTCGTGGTAACATAAAGCACAACTTATTGTAACTAAAAATTTTAAAT
GTTAATTTTCTTGTATAGTTTTATAAAAAGCTTTTTAATTTTGATATTGT
TTTCATATCTTTAGAATATTTTACCTAGAGTTTTCTTTGAGAGTTAAAAA
CGAAATATTTCTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058890-exon-scaffold_314-1575043694:439111..439159 | TCONS_00058890-exon-scaffold_314-1575043694:439111..439159 | Clytia hemisphaerica | exon |
| TCONS_00058890-exon-scaffold_314-1575043694:437193..438838 | TCONS_00058890-exon-scaffold_314-1575043694:437193..438838 | Clytia hemisphaerica | exon |
| TCONS_00058890-exon-scaffold_314-1510915933:439111..439159 | TCONS_00058890-exon-scaffold_314-1510915933:439111..439159 | Clytia hemisphaerica | exon |
| TCONS_00058890-exon-scaffold_314-1510915933:437193..438838 | TCONS_00058890-exon-scaffold_314-1510915933:437193..438838 | Clytia hemisphaerica | exon |
| TCONS_00058890-exon-scaffold_314-1491911889:439111..439159 | TCONS_00058890-exon-scaffold_314-1491911889:439111..439159 | Clytia hemisphaerica | exon |
| TCONS_00058890-exon-scaffold_314-1491911889:437193..438838 | TCONS_00058890-exon-scaffold_314-1491911889:437193..438838 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:437193..439159 - |
Blast
BLAST of TCONS_00058890 vs. Swiss-Prot (Human)
Match: MMAA (Methylmalonic aciduria type A protein, mitochondrial OS=Homo sapiens GN=MMAA PE=1 SV=1) HSP 1 Score: 360.918 bits (925), Expect = 1.845e-118 Identity = 177/333 (53.15%), Postives = 235/333 (70.57%), Query Frame = 3
Query: 165 AEEIYSELIKGNRGALAKGITLTESTRQDHIDEAHKLLHLTLEYLKNKQTE---KP-TFRIGLTGSPGAGKSTLIETLGKQLTSLGHKVAVLAVDPSSAKTGGSLLGDRTRMVELSHDPNAFIRPSPSSGTLGGVTRRTNEAIVLCEGAGYDIILVETVGIGQSEFAVSNMTDMFVLIIPPGSGDELQGIKKGVVEMADLVLINKADGDLLPAARKVQTEYMSALKVLQRPGAKWTPKVYPVSALHNEGLDKAWWKIEQYKSKMLEDETFLQRRKHQYKSWMWNYVQDNIMERFLSNEKVKNRIKHFEILVENEQVHPAFAADELLKIFTNEN 1151
+++Y+ LI+G R LA+ ITL EST + A LL L Y + ++ KP FR+GL+G PGAGKST IE GK LT GHK++VLAVDPSS +GGSLLGD+TRM ELS D NA+IRPSP+ GTLGGVTR TNEAI+LCEGAGYDIIL+ETVG+GQSEFAV++M DMFVL++PP GDELQGIK+G++EMADLV + K+DGDL+ AR++Q EY+SALK+L++ W PKV +SA EG+ + W K++ ++ ML +R+ Q K WMWN +Q++++E F ++ V+ +I E V + P AAD LLK F + +
Sbjct: 86 VDKLYTGLIQGQRACLAEAITLVESTHSRKKELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLMLASGELTAKRRKQQKVWMWNLIQESVLEHFRTHPTVREQIPLLEQKVLIGALSPGLAADFLLKAFKSRD 418
The following BLAST results are available for this feature:
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