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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058898 ID=TCONS_00058898|Name=TCONS_00058898|organism=Clytia hemisphaerica|type=transcript|length=2702bpRun BLAST on NCBI protein sequence of TCONS_00058898-protein >TCONS_00058898-protein ID=TCONS_00058898-protein|Name=TCONS_00058898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp MNFMKGKISTGGTSTQYETVEDSKDLRIPVQSEEAFEHGINFKCKYIGTERun BLAST on NCBI transcript from alignment at scaffold_314:568423..574540- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058898 ID=TCONS_00058898|Name=TCONS_00058898|organism=Clytia hemisphaerica|type=transcript|length=6118bp|location=Sequence derived from alignment at scaffold_314:568423..574540- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_314:568423..574540- >TCONS_00058898 ID=TCONS_00058898|Name=TCONS_00058898|organism=Clytia hemisphaerica|type=CDS|length=13959bp|location=Sequence derived from alignment at scaffold_314:568423..574540- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058898 vs. Swiss-Prot (Human)
Match: CAPON (Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein OS=Homo sapiens GN=NOS1AP PE=1 SV=3) HSP 1 Score: 188.734 bits (478), Expect = 3.345e-51 Identity = 124/249 (49.80%), Postives = 162/249 (65.06%), Query Frame = 2
Query: 230 TSTQYETVEDSKDLRIPVQSEEAFEHGINFKCKYIGTEEIPRPNSRVEIVAAMRRIRYEHKYRNIKKRKVFVDISADGXXXXXXXXXXXXXXP------DESTLFIMQYAINRVFYVSHDSQDLKIFSYIAR-GEDGVFRCCVFKALGKSQAMHVVRTIGQAFEVCHKIN-----KVRDKTTSPTDEKESPIHSDKIDAQITDTDEKS---PEETDID---------DVCE-----SDIDSPNIKGGTH 889
+ T+Y V+D DLRIP+ +E+AF+HGI F+ KY+G+ ++PRPNSRVEIVAAMRRIRYE K +NIKK+KV + +S DG+KV ++KKKK + DES + +MQ I R+FYVSHDSQDLKIFSYIAR G +FRC VFK+ KSQAM +VRT+GQAFEVCHK++ + D E+ S D Q+T + S EETDID DV E +D+D+ +GG+H
Sbjct: 3 SKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIRYEFKAKNIKKKKVSIMVSVDGVKVILKKKKKLLLLQKKEWTWDESKMLVMQDPIYRIFYVSHDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNADGQEDGESERNSNSSGDP-GRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVTDLDAVGKEGGSH 250 The following BLAST results are available for this feature:
BLAST of TCONS_00058898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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