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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058933 ID=TCONS_00058933|Name=TCONS_00058933|organism=Clytia hemisphaerica|type=transcript|length=944bp
ACACGTTCAAGTTATGTTCACAATTCATCATAATGGCGGAAGAAGCATTC
AAGGCAATCTTCGAAATGGATGTCTTTGATTACATCAGTTTAGTGTTGAG
TATTTTGGTTATCATTTTACATTCGTATGGGTTAAAACTCCTACAGACGA
TCAATCAAACGAGCGGTGAGAAACACATCTTCATTGCAAATTTTTCACTA
TGGAATATTTTTTGGGCGTTGAGTAATTTGGTACGTTACCCATTGATCAG
ATATGGTTCAGACAGAGTTTTCACTTATTGGACATTGGTAATTGAAGGAG
CACGTATACCTTTTTATATGGCCATCTTCTACATCACTATCGACCGATTT
CTACAGCTCTATCTACACATGCGTTACCatcgttgttttttcaaaaaacg
taaaatcttACTAAGTGTTTTACCGTGTGTAGCATACCTTATCTGGCTCG
CAACAACATTACCATTGTTCACTAAAGATATAATTACATTTGAAGTCTTG
ATTTTATGTACTTCGCTTTATATTTCGGGTGCGTTCCACGTTCTAATTTT
AGTAACTTTTGTAACCATCTACTCATACATCAGTCAGAAATTATGGCGAG
CAAGCAGACATGCTATTGGAAAACGAAAATCGTCTTTGAAGAAACTTGCA
GTACCTTTTATTATCGTTatcactttcattttattaGAAACGTTACCTGA
CGGCTTTATCTTCTTTGGGCTCGCGCATTACGGTGGATGGACAATATTTT
TATTCCGACTGGATGCTCTTTCGAACGCTTTAGTCTACATTTTCTTACAA
CCAAGGATTAAATACCAAGTTGGAAAACAAATGCAAAAAGAGACCGACTT
TTTGAGTTGCCATTCACGCACAACTGCTAGAAAGGAGAAATCGAGTAAAT
CAAGTAATCTTACTGGCAGTTCCGGTAACTCGTGAATATTGTGT Run BLAST on NCBI protein sequence of TCONS_00058933-protein >TCONS_00058933-protein ID=TCONS_00058933-protein|Name=TCONS_00058933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
TFKLCSQFIIMAEEAFKAIFEMDVFDYISLVLSILVIILHSYGLKLLQTI
NQTSGEKHIFIANFSLWNIFWALSNLVRYPLIRYGSDRVFTYWTLVIEGA
RIPFYMAIFYITIDRFLQLYLHMRYHRCFFKKRKILLSVLPCVAYLIWLA
TTLPLFTKDIITFEVLILCTSLYISGAFHVLILVTFVTIYSYISQKLWRA
SRHAIGKRKSSLKKLAVPFIIVITFILLETLPDGFIFFGLAHYGGWTIFL
FRLDALSNALVYIFLQPRIKYQVGKQMQKETDFLSCHSRTTARKEKSSKS
SNLTGSSGNS Run BLAST on NCBI transcript from alignment at scaffold_314:511421..512364 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058933 ID=TCONS_00058933|Name=TCONS_00058933|organism=Clytia hemisphaerica|type=transcript|length=944bp|location=Sequence derived from alignment at scaffold_314:511421..512364 (Clytia hemisphaerica)
ACACAATATTCACGAGTTACCGGAACTGCCAGTAAGATTACTTGATTTAC
TCGATTTCTCCTTTCTAGCAGTTGTGCGTGAATGGCAACTCAAAAAGTCG
GTCTCTTTTTGCATTTGTTTTCCAACTTGGTATTTAATCCTTGGTTGTAA
GAAAATGTAGACTAAAGCGTTCGAAAGAGCATCCAGTCGGAATAAAAATA
TTGTCCATCCACCGTAATGCGCGAGCCCAAAGAAGATAAAGCCGTCAGGT
AACGTTTCtaataaaatgaaagtgatAACGATAATAAAAGGTACTGCAAG
TTTCTTCAAAGACGATTTTCGTTTTCCAATAGCATGTCTGCTTGCTCGCC
ATAATTTCTGACTGATGTATGAGTAGATGGTTACAAAAGTTACTAAAATT
AGAACGTGGAACGCACCCGAAATATAAAGCGAAGTACATAAAATCAAGAC
TTCAAATGTAATTATATCTTTAGTGAACAATGGTAATGTTGTTGCGAGCC
AGATAAGGTATGCTACACACGGTAAAACACTTAGTaagattttacgtttt
ttgaaaaaacaacgatGGTAACGCATGTGTAGATAGAGCTGTAGAAATCG
GTCGATAGTGATGTAGAAGATGGCCATATAAAAAGGTATACGTGCTCCTT
CAATTACCAATGTCCAATAAGTGAAAACTCTGTCTGAACCATATCTGATC
AATGGGTAACGTACCAAATTACTCAACGCCCAAAAAATATTCCATAGTGA
AAAATTTGCAATGAAGATGTGTTTCTCACCGCTCGTTTGATTGATCGTCT
GTAGGAGTTTTAACCCATACGAATGTAAAATGATAACCAAAATACTCAAC
ACTAAACTGATGTAATCAAAGACATCCATTTCGAAGATTGCCTTGAATGC
TTCTTCCGCCATTATGATGAATTGTGAACATAACTTGAACGTGT Coding sequence (CDS) from alignment at scaffold_314:511421..512364 >TCONS_00058933 ID=TCONS_00058933|Name=TCONS_00058933|organism=Clytia hemisphaerica|type=CDS|length=933bp|location=Sequence derived from alignment at scaffold_314:511421..512364 (Clytia hemisphaerica)
TCACGAGTTACCGGAACTGCCAGTAAGATTACTTGATTTACTCGATTTCT
CCTTTCTAGCAGTTGTGCGTGAATGGCAACTCAAAAAGTCGGTCTCTTTT
TGCATTTGTTTTCCAACTTGGTATTTAATCCTTGGTTGTAAGAAAATGTA
GACTAAAGCGTTCGAAAGAGCATCCAGTCGGAATAAAAATATTGTCCATC
CACCGTAATGCGCGAGCCCAAAGAAGATAAAGCCGTCAGGTAACGTTTCt
aataaaatgaaagtgatAACGATAATAAAAGGTACTGCAAGTTTCTTCAA
AGACGATTTTCGTTTTCCAATAGCATGTCTGCTTGCTCGCCATAATTTCT
GACTGATGTATGAGTAGATGGTTACAAAAGTTACTAAAATTAGAACGTGG
AACGCACCCGAAATATAAAGCGAAGTACATAAAATCAAGACTTCAAATGT
AATTATATCTTTAGTGAACAATGGTAATGTTGTTGCGAGCCAGATAAGGT
ATGCTACACACGGTAAAACACTTAGTaagattttacgttttttgaaaaaa
caacgatGGTAACGCATGTGTAGATAGAGCTGTAGAAATCGGTCGATAGT
GATGTAGAAGATGGCCATATAAAAAGGTATACGTGCTCCTTCAATTACCA
ATGTCCAATAAGTGAAAACTCTGTCTGAACCATATCTGATCAATGGGTAA
CGTACCAAATTACTCAACGCCCAAAAAATATTCCATAGTGAAAAATTTGC
AATGAAGATGTGTTTCTCACCGCTCGTTTGATTGATCGTCTGTAGGAGTT
TTAACCCATACGAATGTAAAATGATAACCAAAATACTCAACACTAAACTG
ATGTAATCAAAGACATCCATTTCGAAGATTGCCTTGAATGCTTCTTCCGC
CATTATGATGAATTGTGAACATAACTTGAACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058933-exon-scaffold_314-1491911889:511421..512364 | TCONS_00058933-exon-scaffold_314-1491911889:511421..512364 | Clytia hemisphaerica | exon |
| TCONS_00058933-exon-scaffold_314-1510915933:511421..512364 | TCONS_00058933-exon-scaffold_314-1510915933:511421..512364 | Clytia hemisphaerica | exon |
| TCONS_00058933-exon-scaffold_314-1575043694:511421..512364 | TCONS_00058933-exon-scaffold_314-1575043694:511421..512364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:511421..512364 . |
Blast
The following BLAST results are available for this feature:
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