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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058952 ID=TCONS_00058952|Name=TCONS_00058952|organism=Clytia hemisphaerica|type=transcript|length=368bp
AATTTATGTACTTGACGATTAACAATCTATCTACCAACGAACAAACGATA
TAAACTACATGTGTGGCAGACTAATCATTGGTGAAGATCATCACTTAGAA
AACattTTGTTAGAGTTCCAACGGTTAGCTGGCTTTAAATTGATCGATAG
GCTGGAGGAATCTCTGTCCGATTACGCACGTGCTATCATCCACTTCTCAA
AATCTGATATGGCGGTGACAATCAGCAATGcttcaacaaaaaaagaaaaa
gactATTGATATGCTGTTGTTGGAGTAATGACCTTACCGGCATTATTTCG
AGAAGATGCAAAACACCACTACGGAATTAATAACACCCTAACTCCTCGAA
TCAGTCATGTTAACCCTG Run BLAST on NCBI transcript from alignment at scaffold_315:120797..122792+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058952 ID=TCONS_00058952|Name=TCONS_00058952|organism=Clytia hemisphaerica|type=transcript|length=1996bp|location=Sequence derived from alignment at scaffold_315:120797..122792+ (Clytia hemisphaerica)
AATTTATGTACTTGACGATTAACAATCTATCTACCAACGAACAAACGATA
TAAACTACATGTGTGGCAGACTAATCATTGGTGAAGATCATCACTTAGAA
AACGTAAcacttttcttcatttttaaatggATGGTACAGTGAAGAGAAAG
GCAAATACCTTCACAATTTGGATAACAAAGAGAAAATTTCTTTGTGGTGT
ACAGGATCAAAAACTTCAACTTGTGCTTTTGCATGACGCTGAAGAATTGC
GCGGAAAAGCGGATAGATCTCTGCTAATCCCTAAAAGTAGACTAGaccct
agacgatgctatcgcccgtttaaaggtcagtaaacgcgggaaagagttag
ggcgtcagggcggtttacgggaaaaaagtggcagTAGAGTTTTGtaacac
tgtaaacatctccgccactgcttactccacccgaatttatcacgcctctc
ctaaactattcctttttttagtgatcttgtgatCGTCTAACTAGACCCTC
TTTGTTAACCAAGGATTTTATTGAAGGTAGACAAACGGCACATATCTAGA
GAAATTTGATTGCACTGCAGCATAGTCGTCTCTGATTTTTTGTTTACCAT
TTCATTTCACGCGTTGGTTTTCAGTACGAAAGGACAACAAGAAGAAATCT
TGAAGTAGAGGTGCGTGTATGATTTTTATTAAATGTTACTGACTCAAGTA
ATGATGGAAAAATGGTTTGAATCATTATATTTCATTACCTGAATTATAAC
TGTATTTTTGACTCGATTTTGAGACAGATTTTATCCACTTCTCAAACTTA
GTGAATAACAGTTAAATTCCATTGTCTGCGAAATCGAGCTGAAATATTAT
GTTGGGTACACATTTTACTAAtgcgtttatttattttcatttcagattTT
GTTAGAGTTCCAACGGTTAGCTGGCTTTAAATTGATCGATAGGCTGGAGG
AATCTCTGTCCAATTACGCNtactccacccgaatttatcacgcctctcct
aaactattcctttttttagtgatcttgtgatCGTCTAACTAGACCCTCTT
TGTTAACCAAGGATTTTATTGAAGGTAGACAAACGGCACATATCTAGAGA
AATTTGATTGCACTGCAGCATAGTCGTCTCTGATTTTTTGTTTACCATTT
CATTTCACGCGTTGGTTTTCAGTACGAAAGGACAACAAGAAGAAATCTTG
AAGTAGAGGTGCGTGTATGATTTTTATTAAATGTTACTGACTCAAGTAAT
GATGGAAAAATGGTTTGAATCATTATATTTCATTACCTGAATTATAACTG
TATTTTTGACTCGATTTTGAGACAGATTTTATCCACTTCTCAAACTTAGT
GAATAACAGTTAAATTCCATTGTCTGCGAAATCGAGCTGAAATATTATGT
TGGGTGCACATTTTACTAAtgcgtttatttattttcatttcagattTTGT
TAGAGTTCCAACGGTTAGCTGGCTTTAAATTGATCGATAGGCTGGAGGAA
TCTCTGTCCGATTACGCACGTGCTATCATCCACTTCTCAAAATCTGATAT
GGCGGTGACAATCAGCAATGcttcaacaaaaaaagaaaaagactgtAAGT
TGCACACCAGTTCTTGTCATTTAGGGTTGAGACATTTCACTGTCCGTCGT
CGCaaacatcaaaagccctttggatagtATAGTAGGGTTTAAAAATGGTC
AATCAAATTTAGACATTTacattaataaacggggggggggatCCTACAGT
CCGGTAGTTGGCAGAAAATCGAAAAGTGAATATCCGGAGGGGGGCGTATA
GGATCCTTGGAATATAATTGAAAGTAAGAATATAATGAACatgaaaaaaa
gcttaaaaaaatataactttgtTTTTCAACAGATTGATATGCTGTTGTTG
GAGTAATGACCTTACCGGCATTATTTCGAGAAGATGCAAAACACCACTAC
GGAATTAATAACACCCTAACTCCTCGAATCAGTCATGTTAACCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058952-exon-scaffold_315-1491911889:120797..120899 | TCONS_00058952-exon-scaffold_315-1491911889:120797..120899 | Clytia hemisphaerica | exon |
| TCONS_00058952-exon-scaffold_315-1510915933:120797..120899 | TCONS_00058952-exon-scaffold_315-1510915933:120797..120899 | Clytia hemisphaerica | exon |
| TCONS_00058952-exon-scaffold_315-1575043694:120797..120899 | TCONS_00058952-exon-scaffold_315-1575043694:120797..120899 | Clytia hemisphaerica | exon |
| TCONS_00058952-exon-scaffold_315-1491911889:122240..122390 | TCONS_00058952-exon-scaffold_315-1491911889:122240..122390 | Clytia hemisphaerica | exon |
| TCONS_00058952-exon-scaffold_315-1510915933:122240..122390 | TCONS_00058952-exon-scaffold_315-1510915933:122240..122390 | Clytia hemisphaerica | exon |
| TCONS_00058952-exon-scaffold_315-1575043694:122240..122390 | TCONS_00058952-exon-scaffold_315-1575043694:122240..122390 | Clytia hemisphaerica | exon |
| TCONS_00058952-exon-scaffold_315-1491911889:122679..122792 | TCONS_00058952-exon-scaffold_315-1491911889:122679..122792 | Clytia hemisphaerica | exon |
| TCONS_00058952-exon-scaffold_315-1510915933:122679..122792 | TCONS_00058952-exon-scaffold_315-1510915933:122679..122792 | Clytia hemisphaerica | exon |
| TCONS_00058952-exon-scaffold_315-1575043694:122679..122792 | TCONS_00058952-exon-scaffold_315-1575043694:122679..122792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:120797..122792 + |
Blast
The following BLAST results are available for this feature:
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