|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058957 ID=TCONS_00058957|Name=TCONS_00058957|organism=Clytia hemisphaerica|type=transcript|length=618bp
tttttcaggaaagaagctcacaaaattgattttggatgCAGATCTGAAAC
TCTCCAACAAGTctttatttctattattttaaaactttacaaagatgcta
aatttattaaatttaattgtattaaaattcatttctttgtGAACGATTGA
AAGAAGCTGTTCTTGCTCGTGAAGTTTTCTTGATCCTGTTCTGTAATAAC
TCGTAAGCTTGTTGTATCTCAATGAATTTGTGTTGTGCGTCTTCTTTATC
CGCCCCTCTGTATCGATCAGGGTGCCATTTGACTACTAACTTCTTATAAC
GTTTCCTTATTTCCTCTTCAGATGCAGTCTGATGGACACCAAGAACCTCT
TTGGCGTTTCTTTCACCCGTTGGGTCAAAAGaactaatgacgtcatcata
aaagTTTTTCCAATGGTTGGATTCACCTTCCCGGTTTCCATTCTCTGAAA
TACGTGAAAGTCAAGGAAGATGCGATTGAAATATTGACATATCCTGGCTC
AGTACCGGTTGAATAGTAGAAAAAAACATATGTTGCCAAAGTCACTATAT
AAGCCGTCATACACAGCTGTGAAATGCATCCAAACACGTGGTAAAACGAC
TGGTGAGGTCATCATGCT Run BLAST on NCBI transcript from alignment at scaffold_315:173178..183076+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058957 ID=TCONS_00058957|Name=TCONS_00058957|organism=Clytia hemisphaerica|type=transcript|length=9899bp|location=Sequence derived from alignment at scaffold_315:173178..183076+ (Clytia hemisphaerica)
tttttcaggaaagaagctcacaaaattgattttggatgCAGATCTGAAAC
TCTCCAACAAGTctttatttctattattttaaaactttacaaagatgcta
aatttattaaatttaattgtattaaaattcatttctttgtGAACGATTGA
AAGAAGCTGTTCTTGCTCGTGAAGTTTTCTTGATCCTGTTCTGTAATAAC
TCGTAAGCTTGTTGTATCTCAATGAATTTGTGTTGTGCGTCTTCTTTATC
CGCCCCTCTGTATCGATCAGGGTGCCATTTGACTACTAACTTCTTATAAC
GTTTCCTTATTTCCTCTTCAGATGCAGTCTGATGGACACCAAGAACCTCT
TTGGCGTTTCTTTCACCCGTTGGGTCAAAAGaactaatgacgtcatcata
aaagTTTTTCCAATGGTTGGATTCACCTTCCCGGTAAATATTccaaaaag
tttgtttgaaaTCAAGCCACACTGGTGATTTGAAGAAATGAATAATGGAG
TCTGTTAGTTTGATCTTTTCTCCATTCTGATATGTGATTGTGGCGTTGAA
GTAAAAGAAACTTGACCATAAAGCAAACACTAGAACAACACCGATTGCAA
AATTCCTTATTCTTACACTATTACTTTCTTTCTTTGCTTCAGGTTTCCAT
TCTCTGAAATACGTGAAAGTCAAGGAAGATGCGATTGAAATATTGACATA
TCCTGGCTCAGTACCGGTTGAATAGTAGAAAAAAACATATGTTGCCAAAG
TCACTATATAAGGTATGGTAAATTGTCCTTTTTCACGACCAATATGTCCT
ACTAGATATACACCAATATTGATTCCAAGTGGTACTAACAAAGTCACTAA
GATTGTGGGTGATTCATCAGGGCACGCTAAGCGAGCTAAAGTTCCATAGC
AAGCTCCTATAAAGACTTGTCCTGAGAAGCGTGAAGTGTTAAATTCAGGT
TGTTTTCggtgtttcattttcaattttaaaatattaagaaatccTTTTTC
GTTATTGGCATCGTCCACATATTCAGGGATACGCCAGAAATCACGAATCC
ATCCTAACCAGAAGAACCCACCTAGAGTTGACCACCATACAAATGCTTGG
TTGTCTCTCCTAAGATAAATGTGATGTACTCCAAATGTCCCCAAAAACAA
CCATAGTAAATAAGTCACAAACAGACTTTTGTCTTCTGCCATATTTTTTA
TTCTGTTCTACACGCCTACATTCGAAGGTTTTGATTCGACTTTTCTATAA
TCAAACAAAATAAGAAAGTTTTGAACAGAACTGTTTTTTCTGTATGATAC
CGAGAAAATATTTACGCTAGAAACAAAACTCgttgcttttgttttgtttt
gtgcaTTTATTCTCAAAAGTATATATCCGTAAGGTACAAAACTGTGACGT
CAAAATATAAGACgtaaatctaaaattcacttGACAGATTTATTTTTGGG
GGTAAATGAAAAAGGGGAAATGGGCAAATAAGATTTCGGTagattttctt
ttcgaaaaatattttttgaaattgaagaaagaCGATAAGATAAGCTTGAT
TTTTATTACGATAAGATAAgagtttttctttaagaaatacTAATTTTCTT
CGTAAGTAAGGCGACATCGgtcctctttgaaaaatgaaatttcttggAAT
AGCTTCTTCCGAAATTTCCTTccttcattttcttataaataagtCTGCTT
GTCCAACAAATTGCATTAAAGGTTTCTgtttaaacaaaaaagaaaacaga
aatgGGAGCTAAaaccatcaaaatttttcaGTATACATTGTAGTCACGAA
ACGGGACAATCTGTTATTCTAAATACTCACTCTCTCAAAATTATATATCC
ACGATCGGCTGGAATAGTTCATttttacttgtggattttatcTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaaaatattttttga
aattgaagaaagaCGATAAGATAAGCTTGATTTTTATTACGATAAGATAA
gagtttttctttaagaaatacTAATTTTCTTCGTAAGTAAGGCGACATCG
gtcctctttgaaaaatgaaatttcttggAATAGCTTCTTCCGAAATTTCC
TTccttcattttcttataaataagtCTGCTTGTCCAACAAATTGCATTAA
AGGTTTCTgtttaaacaaaaaagaaaacagaaatgGGAGCTAAaaccatc
aaaatttttcaGTATACATTGTAGTCACGAAACGGGTAGTGACAATCTGT
TATTCTAAATACTCACTCTCTCAAAATTACATATCCACGATCGGCTGGAA
TAGTTCATttttacttgtggattttatcTCGTAAGGGGCGTGGTAGAGTT
AACTTGAATTTACCCCCAGGGGTGAAACTCTATTATAATATTCTTTTGAA
TAGACTACATACCAATCATTTTTAATCTATCAATATTTATGATTTGTTTT
GGAATTCTTAGCTGGAAGTCTTTCGTTCTTCCCTGGATGCTTGTATAAAC
ACTGTATGAAAAActatttcaccatttttttgtcaaaaacagaaaaaaat
aaaatgaaacacGAAAAAAGAAACAGAAAGGAAGATGAGAAAGTAACATA
TATAAGATTGTAAAGGCTGAAAAGCCAAGCTGAATTCACAAACTTAATGA
CGTCACTTATTACAAGATTCTGTGGTCCACTTTACGTATTACATGAAACA
GCTATCTAACAAATTAATGTAGTTTATTCAGATCTATTGTTGAGTTTGAG
GTGATTCATCATTGACCTAGTTGATAATTAATTGAACAAAAGAAGTTGGT
TGAGAGTGTGATTTTCATGAAGTAGTGTGACCTTGTTTATTTGCCCCATA
CCGCAAATAGAATCGGGTTTTAAATGCTATTTTGTTCaagctgtttttaa
tgaaaaccatatgattttatttttaaaatgtaggTATTACATCGAGAcga
aaaaatattgttaaagtATTTGTGTATGAGTCGTATTAGTTGTGGAACAC
TGTTTGTTTAAATTTTGTTGTTGCTCAAAATACTGTTGGATATGGTGAAC
ATTTGAATCAATAAACTAAATCAAATTGCGATTGGCTTGAACCTTGATCG
AATACAAGAAATAGTAAAGTTGCCATTATGACTTTGCAAGACAAGATAAG
GAAAACAAGCTGTATTGACTCAATACGCATGCGTAAGAAATCAGTCTACC
ACCAGCAAGTATCACAACCCATCTCCAAAAAGCGTTCTAGGGCTTCTACA
GAACCTAACATCAAATTACCTACCGATGACCAGTCTACCAATAGTGGTCA
ACGAAAGCGATCAACATTTTTCACGAACGGATCCTCGGCCTATGAAGGCC
TGGATAGCAACGAATTCGAACCAGATTACAAAGAGCATTATAGACGAACA
TTACTTCAAATGTATGCTGAAGATGAAATTGCTAAAGACATTGATAATAT
CTCGCGATCTTCTCTAATAAGTGATTCAGGGTTCAAAACACAGACTGTGG
AACCAAATCAACTAATTGGATGTATACGCTACATGGCTACAGAGCATGAA
AGTTTGCTACAGTTTCTGATTTTTCTTCCACTCGTTTTGACTTCATTGTA
CATTGTTTTCATCGAAAATAAACCATTAATCACTTGGGGAGATTGAACTT
ATTGGCCTTTGATACGGGAAGAAACTACGGTGGATTTCTGAGAACTGGGG
GATATAATAAGCGTAAAGCAGATAAACTTATCTCTCGTTGTGACTTTATC
GAAATCAGCGGACTTTACTTTAATAGAAACCAAGATCATAGATTTTGAAC
ACTCTGAAATGAATCATATTATGAATTGGTCCTACAATATTTACACTGGA
CAAACTATTGTAACTATATTCAATTAAATACGCATTCAAATACTTTAAAG
TATTCAAGACACCAACATTGATTATGGTCATTTTCTCTTCGTTACTGAAA
AAGGGATGTATCAATCAATAAATACTGTTTAAATTGTTTCATCCATTGTA
GTCAAGTTAGTccaaatttatgtttttaaatctAAAAAGGTTTTTGGCaa
tttgacagatttttttatcTTAGAAATAAATACACGGATTAGCACAGCTA
TTGCCAAGGAATATGAGACAAACCATAACTGATAATGCTTAGAGAGGTAA
ACATGAAGTACACACCAATCACCCATAAACATCTTTGGATCAACTTCTTA
GAGACTTCTCCCGGATGTCTGATCATTTCACTCCTGTTGTGTAGGTGATT
CGGTCATCTTCTTCACACGATCTCTTCATTGCTTGAACACGCATAAGATC
AGAAAACAAAAAGTGGGCGAAGATATCAGGGTCAGAATCGTGCTGGATAC
AGAAAAAGTATTGATTGTCTCTCGCTGGTTTTGATCGAAAAGATAAGGTG
ATAACATCGACATTGGTGCAACCCGGAACAAGATAATTACAAACCGAAGA
AGTTTCTGTGTAATGATTTCGTGATAAGTTGAGAATCTTGATATTCTGAT
GTATTTAACGACTGCTAGAACAATCACACTTAATGGGGATGTAGAAGTCA
TGCTTAGAAGCCACACTGCAGACGCTCTCATCGGAAAAGAATCATAATTC
CAAAAGCATGACAAATAGCAAGTGATAACAGAATCTAGTCGTTAATATCA
CTATCCTTTGGAAGTTGATACTTCTTATGAATACAGATGACATTCCCAAt
accaccaaaaatggtcatcAACCAGTAACACACAGTAAAGAAAATGTAAA
CGGAGGCTCGGAAACAGATTCCACACAAGAAGCCTGACATTGTAGTTGAT
TTATATTCTATCGGTTGTGATGAATGTGATGCCGAATGACGAGAAGGggc
gagatggagtttttacaagctcttattcgatttggttggtcgttaaccag
taataaaacaattttgttgctttttctaaagaacgcgtcatttttattac
ttcaaatgaacaattattaaagtattttataaaaactccatctcatctga
atgAGGAAGATTTCGTCATCAAGGCACCTTTAGATACTCTTGGAATGTAG
TGTTTCTTTTTTGGTGGATACAGTAATCAAAATGTGTGCAGTTTCAAGAA
AAATGTAGTTGCTACCACTGTGTTTCGATCAAAGAtcatagtgtccttca
gggtctctcccccccccatgcctagaatgaaaattttccatccccccCTC
ATTTTTCCCCACCCTGCCTCCAAAAATNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCTCATTTTTCCCcaccctggcttcaaaaaaaattc
tttcccccctatacgtccttttgacctcaaaacccatcccccctgaatcc
agggggaggacactatgaagaTGAATTTATCTTCCCCACATATTGTTTTT
TCGAACGATCAAGTTTATTGAAGTCAGGAAAATAATGACCCATGATGAGT
GACTTTTTCCTATTGAACATGTCCTTCTTCATGATTCTCCTTCGGGAATT
AGAGAGAACGAAAAAGTTTCCGGTATATTTGTTCGATAGCAATTATCTTA
TATATGGGATATTTGAGCAACAAGGAAAAAGTGTTTGATAAGATATCTTT
GAACTTGTATGTATGGTTAAATTTGTATATTAGTCTACTATATTGTTCCC
ATTTATACAGTATTTACATCataatttgaaatatgaaaatataatttacc
gttttacttcgaataaacgccacCCTCGAACGAACAACCCCTCCCTAAAT
TCCTATAAATTCATTAAACGTCCAGTGCTTTTATTCGAAGTAGTACGGTG
TAAGCCTTTATTTTGTTCAACTATAGAACAAACCTTAGCATGAACATCAC
TCATGGCCTTCTAGTTTTcacaacaaactttttgacatattttagACATT
TTTTCTTCGGTGCCATTTTTGTCCTTTCAATATGACAGTGAAAACATTTA
AACTTGAATTAATGCCTTTTTTACGTAATTGTCTCCTCATTGAACTGTGT
ATGAGGTCAATACTTGGAATTGACACTCTCAAAATGATGAAGTCGCCATC
TTTCTCCTACCGTTTTCCTCTTATCAACAAACTCTTTCATCTATGAGGTT
CAGAATGGTGTTTCTTTCCTCTTCTTTTTCTCAAATGTCTTctcttcttt
ttcttgatcTTTAAACCCCTTTGTGGAGGTAACATCTTCCAACCAAAGGC
ATGGCGTCTGTTCATAATGGTTGTATACGAGGTCGAGTTTATCGCCTTTA
TACTCCTGGAGTGTAATtgtttcttgatatttttcataACGCTTAATATT
GAGTCATTCTTTATCTCTTTAATATCACGCTTATGTTTTCCcaatttctc
tttcgttttATGTTTACTATTAATCTTTGACGTCAAATTGTTCTTTATTT
TCGTCGTGTTATAAGCGACAGGTCCGTCATCCTCCGACACACTTCGTTTC
ACATTAACTGTCATTATACTTTCAAATCGAAAAGCATCAATCTCTATTGA
AGTTGTATTACCCGTCGGGCATCGCATTTTACCTAATAAGGCAAATACCT
GGTCCTCATCCAACGCATAATCGTAAATAATAAACTCATCGACCCATCCG
TTAATACGTCGGTCATCAAAATCATAATATCCAATCGAAGCTTTGTAACC
CCAATCTTGTGATAACTCACCGTTACCGATATTACTACCTTGCTCCTTGC
CGTCAATAAACAcctgaaaataatatttcaatgGCTTNTCGAACGATCAA
GTTTATTGAAGTCAGGAAAATAATGACCCATGATGAGTGACTTTTTCCTA
TTGAACATGTCCTTCTTCATGATTCTCCTTCGGGAATTAGAGAGAACGAA
AAAGTTTCCGGTATATTTGTTCGATAGCAATTATCTTATATATGGGATAT
TTGAGCAACAAGGAAAAAGTGTTTGATAAGATATCTTTGAACTTGTATGT
ATGGTTAAATTTGTATATTAGTCTACTATATTGTTCCCATTTATACAGTA
TTTACATCataatttgaaatatgaaaatataatttaccgttttacttcga
ataaacgccacCCTCGAACGAACAACCCCTCCCTAAATTCCTATAAATTC
ATTAAACGTCCAGTGCTTTTATTCGAAGTAGTACGGTGTAAGCCTTTATT
TTGTTCAACTATAGAACAAACCTTAGCATGAACATCACTCATGGCCTTCT
AGTTTTcacaacaaactttttgacatattttagACATTTTTTCTTCGGTG
CCATTTTTGTCCTATCAATATGACAGTGAAAACATTTAAACTTGAATTAA
TGCCTTTTTTACGTAATTGTCTCCTCATTGAACTGTGTATGAGGTCAATA
CTTGGAATTGACACTCTCAAAATGATGAAGTCGCCATCTTTCTCCTACCG
TTTTCCTCTTATCAACAAACTCTTTCATCTATGAGGTTCAGAATGGTGTT
TCTTTCCTCTTCTTTTTCTCAAATGTCTTctcttctttttcttgatcTTT
AAACCCCTTTGTGGAGGTAACATCTTCCAACCAAAGGCATGGCGTCTGTT
CATAATGGTTGTATACGAGGTCGAGTTTATCGCCTTTATACTCCTGGAGT
GTAATtgtttcttgatatttttcataACGCTTAATATTGAGTCATTCTTT
ATCTCTTTAATATCACGCTTATGTTTTCCcaatttctctttcgttttATG
TTTACTATTAATCTTTGACGTCAAATTGTTCTTTATTTTCGTCGTGTTAT
AAGCGACAGGTCCGTCATCCTCCGACACACTTCGTTTCACATTAACTGTC
ATTATACTTTCAAATCGAAAAGCATCAATCTCTATTGAAGTTGTATTACC
CGTCGGGCATCGCATTTTACCTAATAAGGCAAATACCTGGTCCTCATCCA
ACGCATAATCGTAAATAATAAACTCATCGACCCATCCGTTAATACGTCGG
TCATCAAAATCATAATATCCAATCGAAGCTTTGTAACCCCAATCTTGTGA
TAACTCACCGTTACCGATATTACTACCTTGCTCCTTGCCGTCAATAAACA
cctgaaaataatatttcaatgGCTTTTTATTATGTGAAAATGTTTCGTCA
CGCTCCAATTAGTCTTGCATACTAGACGACTAATTAGTATAATTCAGaca
taagcaaaaaataaagGAAGGGACAAATTATTATgatacaaactgatatt
atcccgttaCGATTATTGTACTATTATATAGCAacaatattactgtatta
cgTGAATTATAAACAACTCCAGTCTACCCCCCAATAGGATGAAAGTTCAC
GGATAAGTTTTTCTAACGGATTGACATTTTTCGAGAACAAAAGCTGAAAG
TATGTGGTGATCTCTTCTTCTCTAAACAATAGTATTCAATATTAGtaggg
cctaatccgcgtcctccctctcaaaaatatcttgtaatatactgttcttt
gggatagactaaaaatggttagGTCGTAAAAAGGATGTCACGGCACCCCA
GGTTTGGGGTGCCGAAATAGTGCCCCTGAAATATTGTTAAATCTTAAGAA
TGTTCAAAATCTTACCCTTGCGATTCCCTTATAGCCGTCATACACAGCTG
TGAAATGCATCCAAACACGTGGTAAAACGACTGGTGAGGTCATCATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058957-exon-scaffold_315-1491911889:173178..173610 | TCONS_00058957-exon-scaffold_315-1491911889:173178..173610 | Clytia hemisphaerica | exon |
| TCONS_00058957-exon-scaffold_315-1510915933:173178..173610 | TCONS_00058957-exon-scaffold_315-1510915933:173178..173610 | Clytia hemisphaerica | exon |
| TCONS_00058957-exon-scaffold_315-1575043694:173178..173610 | TCONS_00058957-exon-scaffold_315-1575043694:173178..173610 | Clytia hemisphaerica | exon |
| TCONS_00058957-exon-scaffold_315-1491911889:173820..173939 | TCONS_00058957-exon-scaffold_315-1491911889:173820..173939 | Clytia hemisphaerica | exon |
| TCONS_00058957-exon-scaffold_315-1510915933:173820..173939 | TCONS_00058957-exon-scaffold_315-1510915933:173820..173939 | Clytia hemisphaerica | exon |
| TCONS_00058957-exon-scaffold_315-1575043694:173820..173939 | TCONS_00058957-exon-scaffold_315-1575043694:173820..173939 | Clytia hemisphaerica | exon |
| TCONS_00058957-exon-scaffold_315-1491911889:183012..183076 | TCONS_00058957-exon-scaffold_315-1491911889:183012..183076 | Clytia hemisphaerica | exon |
| TCONS_00058957-exon-scaffold_315-1510915933:183012..183076 | TCONS_00058957-exon-scaffold_315-1510915933:183012..183076 | Clytia hemisphaerica | exon |
| TCONS_00058957-exon-scaffold_315-1575043694:183012..183076 | TCONS_00058957-exon-scaffold_315-1575043694:183012..183076 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:173178..183076 + |
Blast
The following BLAST results are available for this feature:
|
