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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058959 ID=TCONS_00058959|Name=TCONS_00058959|organism=Clytia hemisphaerica|type=transcript|length=1689bp
CCGAGGTGTTCAGAGGCTCGTTAGAAAAAAATAGTGAAATTTCGCTAGAA
TTGTGTGTATTAGAGCatatttttgtattaaaaatgGATTTTGGAGCGAT
GGAAATGAGTTGGGAGGAAGGAGATGTCATTTCCAAAATCTTGAACGAAA
ATAAAGACGAAATGTCgttcaaaaatgaagaaaaaacacCTATGAAATCT
TTGTATgaagaatttttggaaatcggtGAAAAATACGAATTTCCTCCAAG
AACAGTTGAAGTTGGAGAATTTAATTGTGTTGAACGTTCAAAAGAAACAG
AGGTGGCTGATGAACAAATGATGAAAACGAACGCTGGACCTTTGAATCGT
ACtttgaagaaaacaaagaaaatgttcaatcCTTCTCAATTCGAAACCAG
TCTACCTTCGAAGCTTTCAACAAGAACTTCAACAACAAACTCAGCACCTT
TTGTTGCTAAAGCTGAAAGAATTCCTTCAGAAGAAAGTAatttatcaaca
aaaacaaacaaacatgtAACTAAAACAGTTGTTCGACCTCCGCCAGGCTT
TCCTGCGAAACCAAAAGGTGAGAAACCGACTTCAAACACCGTCCAAAGAT
TATTGAATCAGTCACCTCCACAGGAATTAAAACCAACAGCAAACCATTTC
AAAGACATTCCAAATATCCAATCAAGCATCTCCAAAACAAAGCCATCCAA
GTTGTCAGGAATGATGAAAGATTTTGAATGTTTGAGTGTGGTGATGGATC
AAGAGATTCATAAATATGAAAATCAACTTTTGACCAATAGAACCAAAGAT
GAAGGTCGCATTGATATGATGAAAACATTGTATTATGAACAACAAGAAAA
AGTGGAAAAGTCTAATCTCAATCATCAacagaaaatcaaaatgttgGAAA
AACAACACCAGGCGAAAATGCGTGAAATGGAACTCCAGCATGAACaagaa
attctgaaattgaagaagaattTAAAGAAGGAGAAAACAGGAGTCGAAGA
ACTTCAAATAGAATTTTATAAATTGTTGGATGAAAGACAGCATAAAGTAG
ACGCTTTGAATGTTAAGATCGATGATTTACAATCTGAATCGTTGGATCAA
GAAACTCCGCCTCCATCAGCTTCTGGTGATGATGATGTTAAGAAATTACA
AAACGAATTCAACAATGAATTGTTTAAACGTGAAGAAGAAATTGATCGAT
TGAATGCTACCATCTTTGATTTGAGATACAAACTGGAAGCTTATGAAGAA
GGAGGACATGACCATATTGCTTGGGAGAATGAAGAACTGACAGAGAAGTT
GGCGATCAAAGATGAATACATTTCCACCTTAAAATTGCAAATTGAAAATC
TTGAGAAAGTTCATCAACAGGATGAATGGGAATTATCACAAGCCGACGAC
AATTTGGAGATGGTTGAACGAAAAGCCACAGACATGGAAAGAAAAGCTAC
TGTATTGATGACAAAAATGAAGACAGAACTGATCAAGGAACGGCAATTAA
ACCAACAATTACATCAACATATCGCTACGATGGATGCAAACCTCACTCAA
ATCGCCCAATATAATAACGTCCTTCAAAAGAACAAGGAGCTTGACCAGGC
TAACCGAGAAAAACTAGCCCGAATGACAAAACGATCAGTTTCTCGTAAAT
CTTCGATCGATCTTTCGAATGATGTTGTTATGAAGTCTT Run BLAST on NCBI protein sequence of TCONS_00058959-protein >TCONS_00058959-protein ID=TCONS_00058959-protein|Name=TCONS_00058959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=562bp
EVFRGSLEKNSEISLELCVLEHIFVLKMDFGAMEMSWEEGDVISKILNEN
KDEMSFKNEEKTPMKSLYEEFLEIGEKYEFPPRTVEVGEFNCVERSKETE
VADEQMMKTNAGPLNRTLKKTKKMFNPSQFETSLPSKLSTRTSTTNSAPF
VAKAERIPSEESNLSTKTNKHVTKTVVRPPPGFPAKPKGEKPTSNTVQRL
LNQSPPQELKPTANHFKDIPNIQSSISKTKPSKLSGMMKDFECLSVVMDQ
EIHKYENQLLTNRTKDEGRIDMMKTLYYEQQEKVEKSNLNHQQKIKMLEK
QHQAKMREMELQHEQEILKLKKNLKKEKTGVEELQIEFYKLLDERQHKVD
ALNVKIDDLQSESLDQETPPPSASGDDDVKKLQNEFNNELFKREEEIDRL
NATIFDLRYKLEAYEEGGHDHIAWENEELTEKLAIKDEYISTLKLQIENL
EKVHQQDEWELSQADDNLEMVERKATDMERKATVLMTKMKTELIKERQLN
QQLHQHIATMDANLTQIAQYNNVLQKNKELDQANREKLARMTKRSVSRKS
SIDLSNDVVMKS Run BLAST on NCBI transcript from alignment at scaffold_315:194928..197620+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058959 ID=TCONS_00058959|Name=TCONS_00058959|organism=Clytia hemisphaerica|type=transcript|length=2693bp|location=Sequence derived from alignment at scaffold_315:194928..197620+ (Clytia hemisphaerica)
CCGAGGTGTTCAGAGGCTCGTTAGAAAAAAATAGTGAAATTTCGCTAGAA
TTGTGTGTATTAGAGCatatttttgtattaaaaatgGATTTTGGAGCGAT
GGAAATGAGTTGGGAGGAAGGAGATGTCATTTCCAAAATCTTGAACGAAA
ATAAAGACGAAATGTCgttcaaaaatgaagaaaaaacacCTATGAAATCT
TTGTATgaagaatttttggaaatcggtGAAAAATACGAATTTCCTCCAAG
AACAGTTGAAGTTGGAGAATTTAATTGTGTTGAACGTTCAAAAGAAACAG
AGGTGGCTGATGAACAAATGATGAAAACGAACGCTGGACCTTTGAATCGT
ACtttgaagaaaacaaagaaaatgttcaatcCTTCTCAATTCGAAACCAG
TCTACCTTCGAAGCTTTCAACAAGAACTTCAACAACAAACTCAGCACCTT
TTGTTGCTAAAGCTGAAAGAATTCCTTCAGAAGAAAGTAatttatcaaca
aaaacaaacaaacatgtAACTAAAACAGTTGTTCGACCTCCGCCAGGCTT
TCCTGCGAAACCAAAAGGTGAGAAACCGACTTCAAACACCGTCCAAAGAT
TATTGAATCAGTCACCTCCACAGGAATTAAAACCAACAGCAAACCATTTC
AAAGACATTCCAAATATCCAATCAAGCATCTCCAAAACAAAGCCATCCAA
GTTGTCAGGAATGATGAAAGATTTTGAATGTTTGAGTGTGGTGATGGATC
AAGAGATTCATAAATATGAAAATCAACTTTTGACCAATAGAACCAAAGAT
GAAGGTCGCATTGATATGATGAAAACATTGTATTATGAACAACAAGAAAA
AGTGGAAAAGTCTAATCTCAATCATCAacagaaaatcaaaatgttgGAAA
AACAACACCAGGCGAAAATGCGTGAAATGGAACTCCAGCATGAACaagaa
attctgaaattgaagaagaattTAAAGAAGGAGAAAACAGGAGTCGAAGA
ACTTCAAATAGAATTTTATAAATTGTTGGATGAAAGACAGCATAAAGTAG
ACGCTTTGAATGTTAAGATCGATGATTTACAATCTGAATCGTTGGATCAA
GAAACTCCGCCTCCATCAGCTTCTGGTGATGATGATGTTAAGAAATTACA
AAACGAATTCAACAATGAATTGTTTAAACGTGAAGAAGAAATTGATCGAT
TGAATGCTACCATCTTTGATTTGAGATACAAACTGGAAGCTTATGAAGAA
GGAGGACATGACCATATTGCTTGGGAGGTAAACAATGAGAATCAGTTAAT
CAACTTAAGCTCATTCACTATATTTCACTAATTTTAGCGATCTCTCTATA
AATCTATCTGAGATTTTTGTATAACGTTGGTAACCAAGTACTATTTTTGA
AAACGATATTTTGTTATAGTCAGTCTTTGCCANTGGTCTAGGAGTCGTCT
TGTTAGAACCGTCTTACGCTGTAGTTTATACTGCATGCTAGCTTGCGAGA
CACCGACACTCAGTTTTTTTAGATCAAGTGCAAAAATCCAGCGTGAACCA
ATAGGAAGAAAGGCCAATGCATTCTCGCTTCATCAACGATGGATGTATTG
TAGGGATGTAGTGGAGGCTAACGATCTGAAGGAATGCGCCTCGCATTGAA
TGGACTGGAAACGACAAGCGAGTATTCAGTTTGAAACCCCGCAGGGGCTA
TGAGATAACACTCTTTGAtggaaaatgaagccacttatttcccatttgAA
ACGACGCGTGACCAATGTGGTTTTAACACAAACGCCGATTTGAAATTAGA
TTCTATCACCAGAAAACTATGTCTAGATTCAAACGTCATTCCAAAAGCGG
AAAAACAAGATTCTTATTATCGAATTTTCCGAGTGTTGGCTATTTTCCAC
gaatgtttaatttttaagatacTTTCTTCAGATATTTAATGTGCAGGTAT
AACAATTATGGCGATCGGTTTAACCAGATAGGGATAGAAACCAAAGCAAA
ACTACGAAAGATAAAATTCGACATTCCGatattttaaaagcaaaaaaagt
ttacTAAGAAATGCAGTTCTTCCCTTTCCATTTTAACAGAATGAAGAACT
GACAGAGAAGTTGGCGATCAAAGATGAATACATTTCCACCTTAAAATTGC
AAATTGAAAATCTTGAGAAAGTTCATCAACAGGATGAATGGGAATTATCA
CAAGCCGACGACAATTTGGAGATGGTTGAACGAAAAGCCACAGACATGGA
AAGAAAAGCTACTGGTAAGTTTCTGAGATCTTTTGGACTGATTTAAACTC
GAAGTATCACCGTCTAAAATTATCGAATTATGGGTGATCTTCTTGTGCAA
TTCATATTCTTTCACACAAAAAGACAGTTTCGGAATATGTACTCTTCACT
CTAAAAACTTGAAGTATGATAGTTTTGATCTTTGAATTTTCTATCCTTTC
TCATAGTATTGATGACAAAAATGAAGACAGAACTGATCAAGGAACGGCAA
TTAAACCAACAATTACATCAACATATCGCTACGATGGATGCAAACCTCAC
TCAAATCGCCCAATATAATAACGTCCTTCAAAAGAACAAGGAGCTTGACC
AGGCTAACCGAGAAAAACTAGCCCGAATGACAAAACGATCAGTTTCTCGT
AAATCTTCGATCGATCTTTCGAATGATGTTGTTATGAAGTCTT Coding sequence (CDS) from alignment at scaffold_315:194928..197620+ >TCONS_00058959 ID=TCONS_00058959|Name=TCONS_00058959|organism=Clytia hemisphaerica|type=CDS|length=5058bp|location=Sequence derived from alignment at scaffold_315:194928..197620+ (Clytia hemisphaerica)
GAGGTGTTCAGAGGCTCGTTAGAAAAAAATAGTGAAATTTCGCTAGAATT
GTGTGTATTAGAGCatatttttgtattaaaaatgGATTTTGGAGCGATGG
AAATGAGTTGGGAGGAAGGAGATGTCATTTCCAAAATCTTGAACGAAAAT
AAAGACGAAATGTCgttcaaaaatgaagaaaaaacacCTATGAAATCTTT
GTATgaagaatttttggaaatcggtGAAAAATACGAATTTCCTCCAAGAA
CAGTTGAAGTTGGAGAATTTAATTGTGTTGAACGTTCAAAAGAAACAGAG
GTGGCTGATGAACAAATGATGAAAACGAACGCTGGACCTTTGAATCGTAC
tttgaagaaaacaaagaaaatgttcaatcCTTCTCAATTCGAAACCAGTC
TACCTTCGAAGCTTTCAACAAGAACTTCAACAACAAACTCAGCACCTTTT
GTTGCTAAAGCTGAAAGAATTCCTTCAGAAGAAAGTAatttatcaacaaa
aacaaacaaacatgtAACTAAAACAGTTGTTCGACCTCCGCCAGGCTTTC
CTGCGAAACCAAAAGGTGAGAAACCGACTTCAAACACCGTCCAAAGATTA
TTGAATCAGTCACCTCCACAGGAATTAAAACCAACAGCAAACCATTTCAA
AGACATTCCAAATATCCAATCAAGCATCTCCAAAACAAAGCCATCCAAGT
TGTCAGGAATGATGAAAGATTTTGAATGTTTGAGTGTGGTGATGGATCAA
GAGATTCATAAATATGAAAATCAACTTTTGACCAATAGAACCAAAGATGA
AGGTCGCATTGATATGATGAAAACATTGTATTATGAACAACAAGAAAAAG
TGGAAAAGTCTAATCTCAATCATCAacagaaaatcaaaatgttgGAAAAA
CAACACCAGGCGAAAATGCGTGAAATGGAACTCCAGCATGAACaagaaat
tctgaaattgaagaagaattTAAAGAAGGAGAAAACAGGAGTCGAAGAAC
TTCAAATAGAATTTTATAAATTGTTGGATGAAAGACAGCATAAAGTAGAC
GCTTTGAATGTTAAGATCGATGATTTACAATCTGAATCGTTGGATCAAGA
AACTCCGCCTCCATCAGCTTCTGGTGATGATGATGTTAAGAAATTACAAA
ACGAATTCAACAATGAATTGTTTAAACGTGAAGAAGAAATTGATCGATTG
AATGCTACCATCTTTGATTTGAGATACAAACTGGAAGCTTATGAAGAAGG
AGGACATGACCATATTGCTTGGGAGAATGAAGAACTGACAGAGAAGTTGG
CGATCAAAGATGAATACATTTCCACCTTAAAATTGCAAATTGAAAATCTT
GAGAAAGTTCATCAACAGGATGAATGGGAATTATCACAAGCCGACGACAA
TTTGGAGATGGTTGAACGAAAAGCCACAGACATGGAAAGAAAAGCTACTG
TATTGATGACAAAAATGAAGACAGAACTGATCAAGGAACGGCAATTAAAC
CAACAATTACATCAACATATCGCTACGATGGATGCAAACCTCACTCAAAT
CGCCCAATATAATAACGTCCTTCAAAAGAACAAGGAGCTTGACCAGGCTA
ACCGAGAAAAACTAGCCCGAATGACAAAACGATCAGTTTCTCGTAAATCT
TCGATCGATCTTTCGAATGATGTTGTTATGAAGTCTGAGGTGTTCAGAGG
CTCGTTAGAAAAAAATAGTGAAATTTCGCTAGAATTGTGTGTATTAGAGC
atatttttgtattaaaaatgGATTTTGGAGCGATGGAAATGAGTTGGGAG
GAAGGAGATGTCATTTCCAAAATCTTGAACGAAAATAAAGACGAAATGTC
gttcaaaaatgaagaaaaaacacCTATGAAATCTTTGTATgaagaatttt
tggaaatcggtGAAAAATACGAATTTCCTCCAAGAACAGTTGAAGTTGGA
GAATTTAATTGTGTTGAACGTTCAAAAGAAACAGAGGTGGCTGATGAACA
AATGATGAAAACGAACGCTGGACCTTTGAATCGTACtttgaagaaaacaa
agaaaatgttcaatcCTTCTCAATTCGAAACCAGTCTACCTTCGAAGCTT
TCAACAAGAACTTCAACAACAAACTCAGCACCTTTTGTTGCTAAAGCTGA
AAGAATTCCTTCAGAAGAAAGTAatttatcaacaaaaacaaacaaacatg
tAACTAAAACAGTTGTTCGACCTCCGCCAGGCTTTCCTGCGAAACCAAAA
GGTGAGAAACCGACTTCAAACACCGTCCAAAGATTATTGAATCAGTCACC
TCCACAGGAATTAAAACCAACAGCAAACCATTTCAAAGACATTCCAAATA
TCCAATCAAGCATCTCCAAAACAAAGCCATCCAAGTTGTCAGGAATGATG
AAAGATTTTGAATGTTTGAGTGTGGTGATGGATCAAGAGATTCATAAATA
TGAAAATCAACTTTTGACCAATAGAACCAAAGATGAAGGTCGCATTGATA
TGATGAAAACATTGTATTATGAACAACAAGAAAAAGTGGAAAAGTCTAAT
CTCAATCATCAacagaaaatcaaaatgttgGAAAAACAACACCAGGCGAA
AATGCGTGAAATGGAACTCCAGCATGAACaagaaattctgaaattgaaga
agaattTAAAGAAGGAGAAAACAGGAGTCGAAGAACTTCAAATAGAATTT
TATAAATTGTTGGATGAAAGACAGCATAAAGTAGACGCTTTGAATGTTAA
GATCGATGATTTACAATCTGAATCGTTGGATCAAGAAACTCCGCCTCCAT
CAGCTTCTGGTGATGATGATGTTAAGAAATTACAAAACGAATTCAACAAT
GAATTGTTTAAACGTGAAGAAGAAATTGATCGATTGAATGCTACCATCTT
TGATTTGAGATACAAACTGGAAGCTTATGAAGAAGGAGGACATGACCATA
TTGCTTGGGAGAATGAAGAACTGACAGAGAAGTTGGCGATCAAAGATGAA
TACATTTCCACCTTAAAATTGCAAATTGAAAATCTTGAGAAAGTTCATCA
ACAGGATGAATGGGAATTATCACAAGCCGACGACAATTTGGAGATGGTTG
AACGAAAAGCCACAGACATGGAAAGAAAAGCTACTGTATTGATGACAAAA
ATGAAGACAGAACTGATCAAGGAACGGCAATTAAACCAACAATTACATCA
ACATATCGCTACGATGGATGCAAACCTCACTCAAATCGCCCAATATAATA
ACGTCCTTCAAAAGAACAAGGAGCTTGACCAGGCTAACCGAGAAAAACTA
GCCCGAATGACAAAACGATCAGTTTCTCGTAAATCTTCGATCGATCTTTC
GAATGATGTTGTTATGAAGTCTGAGGTGTTCAGAGGCTCGTTAGAAAAAA
ATAGTGAAATTTCGCTAGAATTGTGTGTATTAGAGCatatttttgtatta
aaaatgGATTTTGGAGCGATGGAAATGAGTTGGGAGGAAGGAGATGTCAT
TTCCAAAATCTTGAACGAAAATAAAGACGAAATGTCgttcaaaaatgaag
aaaaaacacCTATGAAATCTTTGTATgaagaatttttggaaatcggtGAA
AAATACGAATTTCCTCCAAGAACAGTTGAAGTTGGAGAATTTAATTGTGT
TGAACGTTCAAAAGAAACAGAGGTGGCTGATGAACAAATGATGAAAACGA
ACGCTGGACCTTTGAATCGTACtttgaagaaaacaaagaaaatgttcaat
cCTTCTCAATTCGAAACCAGTCTACCTTCGAAGCTTTCAACAAGAACTTC
AACAACAAACTCAGCACCTTTTGTTGCTAAAGCTGAAAGAATTCCTTCAG
AAGAAAGTAatttatcaacaaaaacaaacaaacatgtAACTAAAACAGTT
GTTCGACCTCCGCCAGGCTTTCCTGCGAAACCAAAAGGTGAGAAACCGAC
TTCAAACACCGTCCAAAGATTATTGAATCAGTCACCTCCACAGGAATTAA
AACCAACAGCAAACCATTTCAAAGACATTCCAAATATCCAATCAAGCATC
TCCAAAACAAAGCCATCCAAGTTGTCAGGAATGATGAAAGATTTTGAATG
TTTGAGTGTGGTGATGGATCAAGAGATTCATAAATATGAAAATCAACTTT
TGACCAATAGAACCAAAGATGAAGGTCGCATTGATATGATGAAAACATTG
TATTATGAACAACAAGAAAAAGTGGAAAAGTCTAATCTCAATCATCAaca
gaaaatcaaaatgttgGAAAAACAACACCAGGCGAAAATGCGTGAAATGG
AACTCCAGCATGAACaagaaattctgaaattgaagaagaattTAAAGAAG
GAGAAAACAGGAGTCGAAGAACTTCAAATAGAATTTTATAAATTGTTGGA
TGAAAGACAGCATAAAGTAGACGCTTTGAATGTTAAGATCGATGATTTAC
AATCTGAATCGTTGGATCAAGAAACTCCGCCTCCATCAGCTTCTGGTGAT
GATGATGTTAAGAAATTACAAAACGAATTCAACAATGAATTGTTTAAACG
TGAAGAAGAAATTGATCGATTGAATGCTACCATCTTTGATTTGAGATACA
AACTGGAAGCTTATGAAGAAGGAGGACATGACCATATTGCTTGGGAGAAT
GAAGAACTGACAGAGAAGTTGGCGATCAAAGATGAATACATTTCCACCTT
AAAATTGCAAATTGAAAATCTTGAGAAAGTTCATCAACAGGATGAATGGG
AATTATCACAAGCCGACGACAATTTGGAGATGGTTGAACGAAAAGCCACA
GACATGGAAAGAAAAGCTACTGTATTGATGACAAAAATGAAGACAGAACT
GATCAAGGAACGGCAATTAAACCAACAATTACATCAACATATCGCTACGA
TGGATGCAAACCTCACTCAAATCGCCCAATATAATAACGTCCTTCAAAAG
AACAAGGAGCTTGACCAGGCTAACCGAGAAAAACTAGCCCGAATGACAAA
ACGATCAGTTTCTCGTAAATCTTCGATCGATCTTTCGAATGATGTTGTTA
TGAAGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00058959-exon-scaffold_315-1491911889:194928..196204 | TCONS_00058959-exon-scaffold_315-1491911889:194928..196204 | Clytia hemisphaerica | exon |
| TCONS_00058959-exon-scaffold_315-1510915933:194928..196204 | TCONS_00058959-exon-scaffold_315-1510915933:194928..196204 | Clytia hemisphaerica | exon |
| TCONS_00058959-exon-scaffold_315-1575043694:194928..196204 | TCONS_00058959-exon-scaffold_315-1575043694:194928..196204 | Clytia hemisphaerica | exon |
| TCONS_00058959-exon-scaffold_315-1491911889:197017..197191 | TCONS_00058959-exon-scaffold_315-1491911889:197017..197191 | Clytia hemisphaerica | exon |
| TCONS_00058959-exon-scaffold_315-1510915933:197017..197191 | TCONS_00058959-exon-scaffold_315-1510915933:197017..197191 | Clytia hemisphaerica | exon |
| TCONS_00058959-exon-scaffold_315-1575043694:197017..197191 | TCONS_00058959-exon-scaffold_315-1575043694:197017..197191 | Clytia hemisphaerica | exon |
| TCONS_00058959-exon-scaffold_315-1491911889:197384..197620 | TCONS_00058959-exon-scaffold_315-1491911889:197384..197620 | Clytia hemisphaerica | exon |
| TCONS_00058959-exon-scaffold_315-1510915933:197384..197620 | TCONS_00058959-exon-scaffold_315-1510915933:197384..197620 | Clytia hemisphaerica | exon |
| TCONS_00058959-exon-scaffold_315-1575043694:197384..197620 | TCONS_00058959-exon-scaffold_315-1575043694:197384..197620 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:194928..197620 + |
Blast
The following BLAST results are available for this feature:
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