|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058960 ID=TCONS_00058960|Name=TCONS_00058960|organism=Clytia hemisphaerica|type=transcript|length=4546bpRun BLAST on NCBI protein sequence of TCONS_00058960-protein >TCONS_00058960-protein ID=TCONS_00058960-protein|Name=TCONS_00058960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp MSATEQISGNIESIVANMALAHEMIMNDDFQLTALNEATENSSLEKRIHDRun BLAST on NCBI transcript from alignment at scaffold_315:215400..239301+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058960 ID=TCONS_00058960|Name=TCONS_00058960|organism=Clytia hemisphaerica|type=transcript|length=23902bp|location=Sequence derived from alignment at scaffold_315:215400..239301+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_315:215400..239301+ >TCONS_00058960 ID=TCONS_00058960|Name=TCONS_00058960|organism=Clytia hemisphaerica|type=CDS|length=11088bp|location=Sequence derived from alignment at scaffold_315:215400..239301+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00058960 vs. Swiss-Prot (Human)
Match: T11L2 (T-complex protein 11-like protein 2 OS=Homo sapiens GN=TCP11L2 PE=2 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 3.717e-56 Identity = 150/447 (33.56%), Postives = 259/447 (57.94%), Query Frame = 3
Query: 255 VANMALAHEMIMNDDFQLTALNEATENSSLEKRIHDVLHKAFWDVLEEEVKSEPPEFKNAFNXXXXXXXXXXXXXPKSKAASAMRXXXXXXXXXXXXKQQIDHNAFDIVSCASFILSTLSKICAPVRDARIKALKAKTDLVPLLRGTFELINLMKIDIANYEIKSIKPILMKQAVKYEDEKFNEFLKENKDGLNLTKIWLKNALD-----IINSIRSPSSQN----KVTPGVVITNAYLSLL---FPTSELCPETLFMDELRLKQIS---GQFEVLI-------NTVSSLTYCLHFLPPHLSTDEDFIIHLKKTIFILIQGSKWDETLVESIFLQIQTETEKECSKREIELKTPAQWDILRNQLKGLLTNDKQEPNQLKTLIKSRIRDYV--LLSMTS-QTLQTPMFTVLAPIQNELKELSTRFVRVVNHNKQVHCARYMDIVEELL 1520
++N+ LAHE+ +N++FQL EA SL R+ ++H+AFWDVL+ E+ ++PPEF++A L E++ ++L + + + +R +I E LD +LI+QQ +H+A DI A++++ST+ K+CAPVRD I+ LKA ++V +LR F +++LM++D+AN+ I S++P L +Q V+YE KF E L+E L+ T W+K +++ + S +P ++N ++P +V+ N+YL LL + EL PETL D RL++++ Q +++ N V ++T L P L++ L + +L++G + ++ + I +T E +K +E P ++ L G ++ ++E N + +LI RI+ Y+ LL + S Q PM LA IQ EL+ L +++ +VN NKQV+ Y +I+ +LL
Sbjct: 72 LSNLTLAHEIAVNENFQLK--QEALPEKSLAGRVKHIVHQAFWDVLDSELNADPPEFEHAIKLFEEIREILLSFL--TPGGNRLRNQICEVLDTDLIRQQAEHSAVDIQGLANYVISTMGKLCAPVRDNDIRELKATGNIVEVLRQIFHVLDLMQMDMANFTIMSLRPHLQRQLVEYERTKFQEILEETPSALDQTTEWIKESVNEELFSLSESALTPGAENTSKPSLSPTLVLNNSYLKLLQWDYQKKEL-PETLMTDGARLQELTEKLNQLKIIACLSLITNNMVGAITGGL----PELAS------RLTRISAVLLEGMNKETFNLKEVLNSIGIQTCVEVNKTLMERGLPTLNAEIQANLIGQFSSIEEEDNPIWSLIDKRIKLYMRRLLCLPSPQKCMPPMPGGLAVIQQELEALGSQYANIVNLNKQVYGPFYANILRKLL 503 The following BLAST results are available for this feature:
BLAST of TCONS_00058960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.