|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058974 ID=TCONS_00058974|Name=TCONS_00058974|organism=Clytia hemisphaerica|type=transcript|length=1669bpRun BLAST on NCBI protein sequence of TCONS_00058974-protein >TCONS_00058974-protein ID=TCONS_00058974-protein|Name=TCONS_00058974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=429bp MKRDSLLKRKEKELSNCADSMKTALQNELKEQGSRLGEESDERLKELSNERun BLAST on NCBI transcript from alignment at scaffold_315:371377..378133+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058974 ID=TCONS_00058974|Name=TCONS_00058974|organism=Clytia hemisphaerica|type=transcript|length=6757bp|location=Sequence derived from alignment at scaffold_315:371377..378133+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_315:371377..378133+ >TCONS_00058974 ID=TCONS_00058974|Name=TCONS_00058974|organism=Clytia hemisphaerica|type=CDS|length=18060bp|location=Sequence derived from alignment at scaffold_315:371377..378133+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058974 vs. Swiss-Prot (Human)
Match: CC138 (Coiled-coil domain-containing protein 138 OS=Homo sapiens GN=CCDC138 PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 4.605e-51 Identity = 155/489 (31.70%), Postives = 260/489 (53.17%), Query Frame = 3
Query: 126 IQKVHKELCDINQKLQEE-------HKRLKEWEYKLMKRDSLLKRKEKELSNCADSMKTALQNE--LKEQGSRLGEESDERLKELSNENKKIRNTMKILTKSNENVRKRAEEGELKIQKYEEKTQNLQNRISNLQRKVEILQDQNKKQTSQTKYSSNNSDRKISIPSKEETTPV---FYEVFGSTLQWISEKYLTTNIVNLIKH--------KPQSEHDPSVEVTNEKFLKVLVLLPRILPQIGQLQTDVQLGYLQFIYWSI--LHAGLSQSSQKYCHSATYRRIGEELYQPSLAQKDKETSP-----------SFYRNKNVHVRLLSKLILLYTITQADVLSQVFQTLNQDLRLENGKDFFMKYKGTFVIFPLFKLTNKVNLMNSLDILMILSTDSPYLQPFLENLSTMEWVHSILTIMRSSMGDENMLEKXXXXXXXXXXXXXNKSIFEALQMKNAMSEIARTTNPTNDFLQLNLRSILFNLDSMKV 1493
I +++ EL I+ KLQ E + L++ E L++R+ LL R E LS + L +KEQ E E LKE + E K++R++ L + N+ ++K+ E + +K + + + +Q R+ NLQRK E + Q K +S + + ++ + SK P+ YE+ + WIS+ +L+ +KH KPQ + EK +K+L L+ L + + + +++FIYWS+ L AG S+ ++T RR+GE++++ + + ++ SP +F+++ N+ +R LS LI+L T+TQAD L+Q F +L DL+ E GK F++Y+ VI ++++K L N +D L+ ++ +S LQPFLE S + + ++R+ D +LEKLS++LQ+LS+I+SNK +FE + + EI RTTNP + FL +NL S LFNL K
Sbjct: 177 ISQIYDELFQIHLKLQCETAAQQKFAEELQKRERFLLEREQLLFRHENALSKIKGVEEEVLTRFQIIKEQHDAEVEHLTEVLKEKNKETKRLRSSFDALKELNDTLKKQLNEASEENRKIDIQAKRVQARLDNLQRKYEFMTIQRLKGSSHAVHEMKSLKQEKAPVSKTYKVPLNGQVYELLTVFMDWISDHHLSK-----VKHEESGMDGKKPQLKFASQRNDIQEKCVKLLPLMTEQLQWMPFVNIKLHEPFVKFIYWSLRQLDAGAQHSTM----TSTLRRLGEDIFKGVVTKGIQDNSPQHSVENKPKTAAFFKSSNLPLRFLSTLIVLKTVTQADYLAQAFDSLCLDLKTEEGKTLFLEYQAVPVILSHLRISSKGLLSNVIDSLLQMTVESKSLQPFLEACSNSLFFRTCSVLLRAPKLDLQILEKLSIILQKLSKIKSNKKLFELFTIHLMLQEIQRTTNPEHAFLCINLNSTLFNLGLTKC 656 The following BLAST results are available for this feature:
BLAST of TCONS_00058974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.