|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059004 ID=TCONS_00059004|Name=TCONS_00059004|organism=Clytia hemisphaerica|type=transcript|length=1418bp
cgcTGTCCtgatgaaatatgtgtctgatatgaaacgggaacacttattta
aaattaaaacctttaaCACCAGAGATTGGAGAAATACGATATCTGAATTT
CATGTTTAATTACGAGACATATATTTCTTTATGTTTCAAATTTAATTACA
ACGTGGTCAAAATAATAACAAGCTTTGATAAACATGAcaagaaaacattt
aaaatttgcCCCTACCCTCActccaacctcgttccctgcgtattatcaga
tTTTTGATGCATACTGATAGCGCCAGAtaatatacaccttttcgaccgta
gccaccaattgccgcgcgggcattttttgtccactttatccaactaaaac
cgtcccagtcttttttgacacatttttatattgtctataggtgcgaaaaa
aggactgggacggttttagtgggataaagcggaaaaaaatgcccgcacag
caattggcggctacggtcgaaaagatgtattCTCTAGTGTCCATAAGTAA
GGtgaataaagcctgggatacacaggGACGAGGTTGTCTTTTACTCATAT
AAATGCATTCGTTGATTTCTTCACTAGTTTTTTAGTCACAGACAAGCATT
TGGATAATATATTGTATCCAATAACATCCAATGTTCTCCATACAGATTTC
ATCTTCCATCGGGAAATCTGCATAAGGACAAGATTCGCCATCTCTTCGAC
GAAGCCCATCGATACAACTTTGGGTTGTTTGTATCCAGCAACTAGTGACA
TTACTATTTGGTGGAGATACCGCACGCCGATTTCTTCCCAATCTTGAAAT
TCTCGAAATCTTGTCTTTGGAAACGTCACGTCGCAATCTTTCTAATTTGT
GGTATCCTTTTGCCGAAAGACTTTCGCTTCTTTTGGTATTCGTTGATAAC
ACTTTGGAGATCTGGTAtacattttgtttttgattcatCAAAGGTTCTGA
TGTCGTCGTTATTTTAGCAAATCGATCTATTTCATTTCCCAATTTTGCTA
TCTTTTCATATAGCAAAGGCTCTGATGTTGTCGTTTTCACATTGGAATCT
GTTTCTGGTTCCAATTTTCCAGTTTTCTCGATTGGTTCTTCGATGCCACT
ATGTGTTTTTGATTCACCACCAAAAGATTCAATCCCAACAGAAGTTGGTT
CTTCATTATCAACACAATGCTGTATAGCTTGCTCTCGACAGAATTGTCGG
GTTTCCTCTGGTATTTCTTCGTAAGCTGAAACCCCATGGCTCACAAAAAT
ACAGAGAGCAGTCAGCAGAATAGTGTGGTATGACTTCATAGCTGAGCCTT
TGTAAATTAAAATCTTGCTGCCActcttcttgaaagaatgtctCGAAAGA
TAGTAAATAAGCGAGTAAATCTTCCCTCAATTTATGTGTTTTCATTCTAA
TGGGATGAACGAGAGTAG Run BLAST on NCBI transcript from alignment at scaffold_315:229594..232347- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059004 ID=TCONS_00059004|Name=TCONS_00059004|organism=Clytia hemisphaerica|type=transcript|length=2754bp|location=Sequence derived from alignment at scaffold_315:229594..232347- (Clytia hemisphaerica)
CGCTGTCCTGATGAAATATGTGTCTGATATGAAACGGGAACACTTATTTA
AAATTAAAACCTTTAACACCAGAGATTGGAGAAATACGATATCTGAATTT
CATGTTTAATTACGAGACATATATTTCTTTATGTTTCAAATTTAATTACA
ACGTGGTCAAAATAATAACAAGCTTTGATAAACATGACAAGAAAACATTT
AAAATTTGCCCCTACCCTCACTCCAACCTCGTTCCCTGCGTATTATCAGA
TTTTTGATGCATACTGATAGCGCCAGATAATATACACCTTTTCGACCGTA
GCCACCAATTGCCGCGCGGGCATTTTTTGTCCACTTTATCCAACTAAAAC
CGTCCCAGTCTTTTTTGACACATTTTTATATTGTCTATAGGTGCGAAAAA
AGGACTGGGACGGTTTTAGTGGGATAAAGCGGAAAAAAATGCCCGCACAG
CAATTGGCGGCTACGGTCGAAAAGATGTATTCTCTAGTGTCCATAAGTAA
GGTGAATAAAGCCTGGGATACACAGGGACGAGGTTGTCTTTTACTCATAT
AAATGCATTCGTTGATTTCTTCACTAGTTTTTTAGTCACAGACAAGCATT
TGGATAATATATTGTATCCAATAACATCCAATGTTCTCCATACAGATTTC
ATCTTCCATCGGGAAATCTGCATAAGGACAAGATTCGCCATCTCTTCGAC
GAAGCCCATCGATACAACTTTGGGTTGTTTGTATCCAGCAACTAGTGACA
TTACTATTTGGTGGAGATACCGCACGCCGATTTCTTCCCAATCTTGAAAT
TCTCGAAATCTTGTCTTTGGAAACGTCACGTCGCAATCTTTCTAATTTGT
GGTATCCTTTTGCCGAAAGACTTTCGCTTCTTTTGGTATTCGTTGATAAC
ACTTTGGAGATCTGGTATACATTTTGTTTTTGATTCATCGAAGGTTCTGA
TGTCGTCGTTATTTTAGCAAATCGATCTATTTCATTTCCCAATTTTGCTA
TCTTTTCATATAGCAAAGGCTCTGATGTTGTCGTTTTCACATTGGAATCT
GTTTCTGGTTCCAATTTTCCAGTTTTCTCGATTGGTTCTTCGATGCCACT
ATGTGTTTTTGATTCACCACCAAAAGATTCAATCCCAACAGAAGTTGGTT
CTTCATTATCAACACAATGCTGTATAGCTTGCTCTCGACAGAATTGTCGG
GTTTCCTCTGGTATTTCTTCGTAAGCTGAAACCCCATGGCTCACAAAAAT
ACAGAGAGCAGTCAGCAGAATAGTGTGGTATGACTTCATAGCTGAGCCTT
TGTAAATTAAAATCTTGCTGCCACTCTTCTTGAAAGAATGTCTCGAAAGA
TAGTAAATAAGCGAGTAAATCTTCCCTCAATTTATGTGTTTTCATTCTAA
TGGGATGAACGAGAGTAGTGAAATGGGAGGACAAATAATTATCTACATGT
CGCTGCTTTAATTTTCAGTGACAATATTTTACAATATTGTCACCAAAAAA
CTAAACTCACCAAAAAAAAAAAATTGTAAAAATATGGGAAAAGATCCATA
TGTTTCAAAACTGTTGAGAACAAGATCGAAAATTAATTCTTTAAAAAGTT
GGTACAAGTTTATAAATCCATGATTCTGAGCATTGATTGGTCGATCAAAG
TNCCGTAGCCACCAATTGCCGCGCGGGCATTTTTTGTCCACTTTATCCAA
CTAAAACCGTCCCAGTCTTTTTTGACACATTTTTATATTGTCTATAGGTG
CTAAAAAAGGACTGGGACGGTTTTAGTGGGATAAAGCGGAAAAAAATGCC
CGCACAGCAATTGGCAGCTACGGTCGAAAAGATGTATTCTCTAGTGTCCA
TAAGTAAGGTGAATAAAGCCTGGGATACACAGGGACGAGGTTGTCTTTTA
CTCATATAAATGCATTCGTTGATTTCTTCACTAGTTTTTTAGTCACAGAC
AAGCATTTGGATAATATATTGTATCCAATAACATCCAATGTTCTCCATAC
AGATTTCATCTTCCATCGGGAAATCTGCATAAGGACAAGATTCGCCATCT
CTTCGATGAAGCCCATCGATACAACTTTGGGTTGTTTGTATCCAGCAACT
AGTGACATTACTATTTGGTGGGGATACCGCACGCCGATTTCTTGCCGATA
TTGAAATTCTCGAAATCTTGTCTTTGGAAACGTCACGTCGCAATCTTTCT
AATTTGTGGTATCCTTTTGCCGAAAGATTTTCGCTTCTTTTGGTGATCTG
GTATACATTTTGTTTTTGATTCATCAAAGGTTCTGATGTCGTCGTTATTT
TAGCAAATCGATCTATTTCATTTCCCAATTTTGCTATCTTTTCATATAGC
AAAGGCTCTGATGTTGTCGTTTTCACATTGGAATCTGTTTCTGGTTCCAA
TTTTCCAGTTTTCTCGATTGGTTCTTCGATGCCACTATGTGTTTTTGATT
CACCACCAAAAGATTCAATCCCAACAGAAGTTGGTTCTTCATTATCAACA
CAATGCTGTATAGCTTGCTCTCGACAGAATTGTCGGGTTTCCTCTGGTAT
TTCTTCGTAAGCTGAAACCCCATGGCTCACAAAAATACAGAGAGCAGTCA
GCAGAATAGTGTGGTATGACTTCATAGCTGAGCCTTTGTAAATTAAAATC
TTGCTGCCACTCTTCTTGAAAGAATGTCTCGAAAGATAGTAAATAAGCGA
GTAAATCTTCCCTCAATTTATGTGTTTTCATTCTAATGGGATGAACGAGA
GTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059004-exon-scaffold_315-1575043694:231428..232347 | TCONS_00059004-exon-scaffold_315-1575043694:231428..232347 | Clytia hemisphaerica | exon |
| TCONS_00059004-exon-scaffold_315-1575043694:229594..230091 | TCONS_00059004-exon-scaffold_315-1575043694:229594..230091 | Clytia hemisphaerica | exon |
| TCONS_00059004-exon-scaffold_315-1510915933:231428..232347 | TCONS_00059004-exon-scaffold_315-1510915933:231428..232347 | Clytia hemisphaerica | exon |
| TCONS_00059004-exon-scaffold_315-1510915933:229594..230091 | TCONS_00059004-exon-scaffold_315-1510915933:229594..230091 | Clytia hemisphaerica | exon |
| TCONS_00059004-exon-scaffold_315-1491911889:231428..232347 | TCONS_00059004-exon-scaffold_315-1491911889:231428..232347 | Clytia hemisphaerica | exon |
| TCONS_00059004-exon-scaffold_315-1491911889:229594..230091 | TCONS_00059004-exon-scaffold_315-1491911889:229594..230091 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:229594..232347 - |
Blast
The following BLAST results are available for this feature:
|
