|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059021 ID=TCONS_00059021|Name=TCONS_00059021|organism=Clytia hemisphaerica|type=transcript|length=1104bp
AGGACCAATTCATAATATGATTCATTTCAGAGTGTTCAAAATCTATGATC
TTGGTTTCTATTAAAGTAAAGTCCGCTGATTTCGATAAAGTCACAACGAG
AGATAAGTTTATCTGCTTTACGCTTATTATATCCCCCAGTTCTCAGAAAT
CCACCGTAGTTTCTTCCCGTATCAAAGGCCAATAAGTTCAATCTCCCCAA
GTGATTAATGGTTTATTTTCGATGAAAACAATGTACAATGAAGTCAAAAC
GAGTGGAAGAAAAATCAGAAACTGTAGCAAACTTTCATGCTCTGTAGCCA
TGTAGCGTATACATCCAATTAGTTGATTTGGTTCCACAGTCTGTGTTTTG
AACCCTGAATCACTTATTAGAGAAGATCGCGAGATATTATCAATGTCTTT
AGCAATTTCATCTTCAGCATACATTTGAAGTAATGTTCGTCTATAATGCT
CTTTGTAATCTGGTTCGAATTCGTTGCTATCCAGGCCTTCATAGGCCGAG
GATCCGTTCGTGAAAAATGTTGATCGCTTTCGTTGACCACTATTGGTAGA
CTGGTCATCGGTAGGTAATTTGATGTTAGGTTCTGTAGAAGCCCTAGAAC
GCTTTTTGGAGATGGGTTGTGATACTTGCTGGTGGTAGACTGATTTCTTA
CGCATGCGTATTGAGTCAATACAGCTTGTTTTCCTTATCTTGTCTTGCAA
AGTCATAATGGCAACTTTACTATTTCTTGTATTCGATCAAGGTTCAAGCC
AATCGCAATTTGATTTAGTTTATTGATTCAAATGTTCACCATATCCAACA
GTATTTTGAGCAACAACAAAATTTAAACAAACAGTGTTCCACAACTAATA
CGACTCATACACAAATactttaacaatattttttcgTCTCGATGTAATAc
ctacattttaaaaataaaatcatatggttttcattaaaaacagcttGAAC
AAAATAGCATTTAAAACCCGATTCTATTTGCGGTATGGGGCAAATAAACA
AGGTCACACTACTTCATGAAAATCACACTCTCAACCAACTTCTTTTGTTC
AATTAATTATCAACTAGGTCAATGATGAATCACCTCAAACTCAACAATAG
ATCT Run BLAST on NCBI protein sequence of TCONS_00059021-protein >TCONS_00059021-protein ID=TCONS_00059021-protein|Name=TCONS_00059021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MTLQDKIRKTSCIDSIRMRKKSVYHQQVSQPISKKRSRASTEPNIKLPTD
DQSTNSGQRKRSTFFTNGSSAYEGLDSNEFEPDYKEHYRRTLLQMYAEDE
IAKDIDNISRSSLISDSGFKTQTVEPNQLIGCIRYMATEHESLLQFLIFL
PLVLTSLYIVFIENKPLITWGD Run BLAST on NCBI transcript from alignment at scaffold_315:176207..177310 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059021 ID=TCONS_00059021|Name=TCONS_00059021|organism=Clytia hemisphaerica|type=transcript|length=1104bp|location=Sequence derived from alignment at scaffold_315:176207..177310 (Clytia hemisphaerica)
AGATCTATTGTTGAGTTTGAGGTGATTCATCATTGACCTAGTTGATAATT
AATTGAACAAAAGAAGTTGGTTGAGAGTGTGATTTTCATGAAGTAGTGTG
ACCTTGTTTATTTGCCCCATACCGCAAATAGAATCGGGTTTTAAATGCTA
TTTTGTTCaagctgtttttaatgaaaaccatatgattttatttttaaaat
gtaggTATTACATCGAGAcgaaaaaatattgttaaagtATTTGTGTATGA
GTCGTATTAGTTGTGGAACACTGTTTGTTTAAATTTTGTTGTTGCTCAAA
ATACTGTTGGATATGGTGAACATTTGAATCAATAAACTAAATCAAATTGC
GATTGGCTTGAACCTTGATCGAATACAAGAAATAGTAAAGTTGCCATTAT
GACTTTGCAAGACAAGATAAGGAAAACAAGCTGTATTGACTCAATACGCA
TGCGTAAGAAATCAGTCTACCACCAGCAAGTATCACAACCCATCTCCAAA
AAGCGTTCTAGGGCTTCTACAGAACCTAACATCAAATTACCTACCGATGA
CCAGTCTACCAATAGTGGTCAACGAAAGCGATCAACATTTTTCACGAACG
GATCCTCGGCCTATGAAGGCCTGGATAGCAACGAATTCGAACCAGATTAC
AAAGAGCATTATAGACGAACATTACTTCAAATGTATGCTGAAGATGAAAT
TGCTAAAGACATTGATAATATCTCGCGATCTTCTCTAATAAGTGATTCAG
GGTTCAAAACACAGACTGTGGAACCAAATCAACTAATTGGATGTATACGC
TACATGGCTACAGAGCATGAAAGTTTGCTACAGTTTCTGATTTTTCTTCC
ACTCGTTTTGACTTCATTGTACATTGTTTTCATCGAAAATAAACCATTAA
TCACTTGGGGAGATTGAACTTATTGGCCTTTGATACGGGAAGAAACTACG
GTGGATTTCTGAGAACTGGGGGATATAATAAGCGTAAAGCAGATAAACTT
ATCTCTCGTTGTGACTTTATCGAAATCAGCGGACTTTACTTTAATAGAAA
CCAAGATCATAGATTTTGAACACTCTGAAATGAATCATATTATGAATTGG
TCCT Coding sequence (CDS) from alignment at scaffold_315:176207..177310 >TCONS_00059021 ID=TCONS_00059021|Name=TCONS_00059021|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_315:176207..177310 (Clytia hemisphaerica)
ATGACTTTGCAAGACAAGATAAGGAAAACAAGCTGTATTGACTCAATACG
CATGCGTAAGAAATCAGTCTACCACCAGCAAGTATCACAACCCATCTCCA
AAAAGCGTTCTAGGGCTTCTACAGAACCTAACATCAAATTACCTACCGAT
GACCAGTCTACCAATAGTGGTCAACGAAAGCGATCAACATTTTTCACGAA
CGGATCCTCGGCCTATGAAGGCCTGGATAGCAACGAATTCGAACCAGATT
ACAAAGAGCATTATAGACGAACATTACTTCAAATGTATGCTGAAGATGAA
ATTGCTAAAGACATTGATAATATCTCGCGATCTTCTCTAATAAGTGATTC
AGGGTTCAAAACACAGACTGTGGAACCAAATCAACTAATTGGATGTATAC
GCTACATGGCTACAGAGCATGAAAGTTTGCTACAGTTTCTGATTTTTCTT
CCACTCGTTTTGACTTCATTGTACATTGTTTTCATCGAAAATAAACCATT
AATCACTTGGGGAGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059021-exon-scaffold_315-1491911889:176207..177310 | TCONS_00059021-exon-scaffold_315-1491911889:176207..177310 | Clytia hemisphaerica | exon |
| TCONS_00059021-exon-scaffold_315-1510915933:176207..177310 | TCONS_00059021-exon-scaffold_315-1510915933:176207..177310 | Clytia hemisphaerica | exon |
| TCONS_00059021-exon-scaffold_315-1575043694:176207..177310 | TCONS_00059021-exon-scaffold_315-1575043694:176207..177310 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:176207..177310 . |
Blast
The following BLAST results are available for this feature:
|
