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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059025 ID=TCONS_00059025|Name=TCONS_00059025|organism=Clytia hemisphaerica|type=transcript|length=1203bp
aATCTGAATATGGGCACGACTACATTGTTCAAAAGAAGGAACTGGAATTG
ACCGACAAATTACTGAATACTGGGTTGACCACAACAAAAGTCTACAATAT
GCGATCGAATGCTATTAAAATGGGATACAACGTAGTTTCAGAGTATACAA
AGGGTGGTGCTTACTTAGAAATTCATGTCTCTGATGTCGCTTCAAGTCGT
ACAAAAGCTTTGGAGCTTTTAGCTAAGATGCATACCGACCTTACAGGATT
CATAAGTCGTTATGAGTTCGATTCTGTGGCAAGCTGGTTGGTCGATCGTT
ATCAATATCTCCCACGTGGTAATGGGGATTTCCAAACgctttttgattgg
ttgaaaaacaaAGAGCGATTGTACTCCATAAATCTGACATGCAGTTTGGC
GGATCGATCAAACTTGAAGTGTTTTGTGAGGGTAGAAGAAATTGATAATT
GAAACTATGATTGCTATAAAAGCTATAATGCAATGAGATTCCAGCTATAG
ATattaacatgtttttatgcCATATTTATAGGGCTTATAGTCCTAGTCCA
TTTAACCAATACTTTATATAATATTCACAAACTAAACAAATGTTTTTCGC
AGCACTGTAAAATGCACTTTAGACTTATAACCGAGAAAAAATCTCACAAC
AACCCCGACATTTGTGTTCTCTGTAAATTATGGACTTGTGACTTCATCTA
AGACTAAGAGACACCTCTGCTCATCCTtagaagatggaatttttattgtt
tgatcCTCGGTTTGATCAGGACAGGCTAAACAGAATTGTTGCTTCATTGC
AAGAAGAGGatcaaaactgaaaaatgaaCTGCATACACGTATGGTGGGAA
AACCATCCCTTTAGATTGAATCTAAAGTGTGTTTTTAAAAGACGAGGCGG
TATGTGAATTTCATTTCCTTCACAAAAATCGTTTTTTGTTATTTGTGTTC
TTTGTAAATTATAAAAGACTTGTGACTTCATCTATTATAAGAGACACTTT
CATTCTTAGATTCTGCTTATCCTAAACATGGAGCTTTTCGTAAGAAGTGT
AGGCCCGCGAAATCTTAGGGTCCATAataattcaattcaaaaatgtAGTC
TCCGAAGAGACCTCCAAATATTGCATAGCCGTCAGTGTTTCATGACGTCT
AGCGGGATATTGGGAAAAGTTTTCAATTAGCAATAATCACGACTCGGTTG
AAC Run BLAST on NCBI protein sequence of TCONS_00059025-protein >TCONS_00059025-protein ID=TCONS_00059025-protein|Name=TCONS_00059025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
SEYGHDYIVQKKELELTDKLLNTGLTTTKVYNMRSNAIKMGYNVVSEYTK
GGAYLEIHVSDVASSRTKALELLAKMHTDLTGFISRYEFDSVASWLVDRY
QYLPRGNGDFQTLFDWLKNKERLYSINLTCSLADRSNLKCFVRVEEIDN Run BLAST on NCBI transcript from alignment at scaffold_315:310071..311273 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059025 ID=TCONS_00059025|Name=TCONS_00059025|organism=Clytia hemisphaerica|type=transcript|length=1203bp|location=Sequence derived from alignment at scaffold_315:310071..311273 (Clytia hemisphaerica)
GTTCAACCGAGTCGTGATTATTGCTAATTGAAAACTTTTCCCAATATCCC
GCTAGACGTCATGAAACACTGACGGCTATGCAATATTTGGAGGTCTCTTC
GGAGACTacatttttgaattgaattatTATGGACCCTAAGATTTCGCGGG
CCTACACTTCTTACGAAAAGCTCCATGTTTAGGATAAGCAGAATCTAAGA
ATGAAAGTGTCTCTTATAATAGATGAAGTCACAAGTCTTTTATAATTTAC
AAAGAACACAAATAACAAAAAACGATTTTTGTGAAGGAAATGAAATTCAC
ATACCGCCTCGTCTTTTAAAAACACACTTTAGATTCAATCTAAAGGGATG
GTTTTCCCACCATACGTGTATGCAGttcatttttcagttttgatCCTCTT
CTTGCAATGAAGCAACAATTCTGTTTAGCCTGTCCTGATCAAACCGAGga
tcaaacaataaaaattccatcttctaAGGATGAGCAGAGGTGTCTCTTAG
TCTTAGATGAAGTCACAAGTCCATAATTTACAGAGAACACAAATGTCGGG
GTTGTTGTGAGATTTTTTCTCGGTTATAAGTCTAAAGTGCATTTTACAGT
GCTGCGAAAAACATTTGTTTAGTTTGTGAATATTATATAAAGTATTGGTT
AAATGGACTAGGACTATAAGCCCTATAAATATGgcataaaaacatgttaa
tATCTATAGCTGGAATCTCATTGCATTATAGCTTTTATAGCAATCATAGT
TTCAATTATCAATTTCTTCTACCCTCACAAAACACTTCAAGTTTGATCGA
TCCGCCAAACTGCATGTCAGATTTATGGAGTACAATCGCTCTttgttttt
caaccaatcaaaaagcGTTTGGAAATCCCCATTACCACGTGGGAGATATT
GATAACGATCGACCAACCAGCTTGCCACAGAATCGAACTCATAACGACTT
ATGAATCCTGTAAGGTCGGTATGCATCTTAGCTAAAAGCTCCAAAGCTTT
TGTACGACTTGAAGCGACATCAGAGACATGAATTTCTAAGTAAGCACCAC
CCTTTGTATACTCTGAAACTACGTTGTATCCCATTTTAATAGCATTCGAT
CGCATATTGTAGACTTTTGTTGTGGTCAACCCAGTATTCAGTAATTTGTC
GGTCAATTCCAGTTCCTTCTTTTGAACAATGTAGTCGTGCCCATATTCAG
ATt Coding sequence (CDS) from alignment at scaffold_315:310071..311273 >TCONS_00059025 ID=TCONS_00059025|Name=TCONS_00059025|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_315:310071..311273 (Clytia hemisphaerica)
TCAATTATCAATTTCTTCTACCCTCACAAAACACTTCAAGTTTGATCGAT
CCGCCAAACTGCATGTCAGATTTATGGAGTACAATCGCTCTttgtttttc
aaccaatcaaaaagcGTTTGGAAATCCCCATTACCACGTGGGAGATATTG
ATAACGATCGACCAACCAGCTTGCCACAGAATCGAACTCATAACGACTTA
TGAATCCTGTAAGGTCGGTATGCATCTTAGCTAAAAGCTCCAAAGCTTTT
GTACGACTTGAAGCGACATCAGAGACATGAATTTCTAAGTAAGCACCACC
CTTTGTATACTCTGAAACTACGTTGTATCCCATTTTAATAGCATTCGATC
GCATATTGTAGACTTTTGTTGTGGTCAACCCAGTATTCAGTAATTTGTCG
GTCAATTCCAGTTCCTTCTTTTGAACAATGTAGTCGTGCCCATATTCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059025-exon-scaffold_315-1491911889:310071..311273 | TCONS_00059025-exon-scaffold_315-1491911889:310071..311273 | Clytia hemisphaerica | exon |
| TCONS_00059025-exon-scaffold_315-1510915933:310071..311273 | TCONS_00059025-exon-scaffold_315-1510915933:310071..311273 | Clytia hemisphaerica | exon |
| TCONS_00059025-exon-scaffold_315-1575043694:310071..311273 | TCONS_00059025-exon-scaffold_315-1575043694:310071..311273 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:310071..311273 . |
Blast
The following BLAST results are available for this feature:
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