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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059064 ID=TCONS_00059064|Name=TCONS_00059064|organism=Clytia hemisphaerica|type=transcript|length=1279bp
GTTACTTTTTGAATAGAGTGAACTTCTTATAaactcctctgggaatcaat
taccataagagtatttaaaaaaagaggTAAGCGTTGCTCCTGATGTaact
tatgaaaaggtctattgggaGATAGAAACGCCTTTTTTGTACCACGCTGA
GATGCTGTAGCGGAGATTTGTCTGAGAAAAGGTCATCATATGCATCTTGG
GATTTGAGCATTATGTTACATTAATATTTAATTTAGTATATTGGTGAAAA
AGTTGTTACGGTAATTATGATGGGAATTATCAAACGTGATACATTTTATT
CCGAGCACCTCATTGgatgaattttaaaataaatgaaTCCCAAATAGCTC
TCATTATAAAGCCTCAGTATAAAAGGAGATCAAAGTAGTacatgaaaatc
aaaccaaaagcAAATTTAAAGCGAAGTACAGTGCAATAGTGAAATTGCCG
ACAACAGAAAGCAATGGGCATCAAAATACTCATTTTATTCACCGCGGTTT
TGGCAATTGCTTATTCCTATCGCATAAGCAATGACGACTCTAACCAAGAA
AGGAATCTCTACCAAGCGCTACAAGATATGATTGATGAACGTGTGGCTGA
AAAAATGGATCCTAAACATGAATGTAAATTCGGAGGTCTATGTAACAACG
TTTACAGCTATGGATGTCATAAGTATGTGAAGAAATGTGATGGTTCAGGA
TGCACAGAAATCGGAACTTGCTGGCGTCAATGTTACTCAAACACGAAGAC
ATGGTGTAGATTAGCAGACACATCCAGACGTgaccaatttttttcttgtc
aaAAAGATTCAGATTGTGCACACACCAGAGAACGAGGATTGTTAGGAAAA
CCTGCTAAGGAAGTTTGCgaaatgaatttttctctttttagctCCGGGCC
AATATGTCATGGATCAAATCCTTAAATGTTTaaagaggaagaaaatttgA
CTTTGTCAATGGTTATGAACAGGATGAAATAAGTTTCTCCCGAAATTATG
TATTACCTTGATTTCAATTCAACTTACACaataattttgtccattttcta
tTATGTTTGATTTGAAgtgtttctttgtaatttttgaaaaataacttttt
taaatattattattttttgcaaGTATGGTTATTAGTTCAAGAAAGTATAA
TTGTTTTGGGATATATTCATTTTTTGCTGTTGGTGCATTGGTTTTCCTCC
CTTCAATTATTTTGTAAACTAAGGCCCTAGCATATGCTTGGGAATTGAAA
ATAAGGTCAAAAATCGTTGTGAAAttaca Run BLAST on NCBI protein sequence of TCONS_00059064-protein >TCONS_00059064-protein ID=TCONS_00059064-protein|Name=TCONS_00059064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MGIKILILFTAVLAIAYSYRISNDDSNQERNLYQALQDMIDERVAEKMDP
KHECKFGGLCNNVYSYGCHKYVKKCDGSGCTEIGTCWRQCYSNTKTWCRL
ADTSRRDQFFSCQKDSDCAHTRERGLLGKPAKEVCEMNFSLFSSGPICHG
SNP Run BLAST on NCBI transcript from alignment at scaffold_316:296365..298281+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059064 ID=TCONS_00059064|Name=TCONS_00059064|organism=Clytia hemisphaerica|type=transcript|length=1917bp|location=Sequence derived from alignment at scaffold_316:296365..298281+ (Clytia hemisphaerica)
GTTACTTTTTGAATAGAGTGAACTTCTTATAaactcctctgggaatcaat
taccataagagtatttaaaaaaagaggTAAGCGTTGCTCCTGATGTaact
tatgaaaaggtctattgggaGATAGAAACGCCTTTTTTGTACCACGCTGA
GATGCTGTAGCGGAGATTTGTCTGAGAAAAGGTCATCATATGCATCTTGG
GATTTGAGCATTATGTTACATTAATATTTAATTTAGTATATTGGTGAAAA
AGTTGTTACGGTAATTATGATGGGAATTATCAAACGTGATACATTTTATT
CCGAGCACCTCATTGgatgaattttaaaataaatgaaTCCCAAATAGCTC
TCATTATAAAGCCTCAGTATAAAAGGAGATCAAAGTAGTacatgaaaatc
aaaccaaaagcAAATTTAAAGCGAAGTACAGTGCAATAGTGAAATTGCCG
ACAACAGAAAGTAAGTACAAATTTAATTGATCAGCTCTTTGAAACTACTG
AATGCGAATAAGTTTTACCACTACACTTTTTCAATAACTCGCTAAACAAC
TAAAACTCTGAATCTGAGTGACTAGATTGAAGCAAATTTTATAGTTGAGC
AAAATAAACAGAAACTTTATTCTTCACTTTTCTTCAGGCAATGGGCATCA
AAATACTCATTTTATTCACCGCGGTTTTGGCAATTGCTTATTCCTATCGC
ATAAGCAATGACGACTCTAACCAAGAAAGGAATCTCTACCAAGCGCTACA
AGATATGATTGATGAACGTGTGGCTGAAAAAATGGATCCTAAACATGAAT
GTAAATTCGGAGGTCTATGTAACAACGTTTACAGCTATGGATGTCATAAG
TATGTGAAGAAATGTGATGGTTCAGGATGCACAGAAATCGTAAGTAAAAT
TATAAAAGCATTTTGGTTGTGCAGCCCTTTGTAAATGTATTTTGACTACT
TGATTGACGATCACTTTTGTATTGTTAGTGGTAGAAACTACCCAATAACA
TCCTATGTAATTTACGTTAACTGTGCCTGAAAATATAATCTAGTTTTTCC
AAGCACACTTTTCCCCGGTATTTGAGTTTAATTTCTCATATTAATTTTCG
CCCATCATTTTGCAAGATCCAATGGAAGAAAAGTGAAAGCAATAGACTTA
TTATGAGGCTCGAACTGCAGTTTTCCCCATGATGTCTTAAGAAACATTTC
GTGAGTGGCAATAACGGTTTAAATGATGTAAAAgctaaaatttggtattt
tgcaaaaaagtacTGTAAAATACTCGCATACATTAAGGTAAATATTATAT
CACGAAATGTAAGTATTTATATAATTCCCGtataatttctgtaattttag
GGAACTTGCTGGCGTCAATGTTACTCAAACACGAAGACATGGTGTAGATT
AGCAGACACATCCAGACGTgaccaatttttttcttgtcaaAAAGATTCAG
ATTGTGCACACACCAGAGAACGAGGATTGTTAGGAAAACCTGCTAAGGAA
GTTTGCgaaatgaatttttctctttttagctCCGGGCCAATATGTCATGG
ATCAAATCCTTAAATGTTTaaagaggaagaaaatttgACTTTGTCAATGG
TTATGAACAGGATGAAATAAGTTTCTCCCGAAATTATGTATTACCTTGAT
TTCAATTCAACTTACACaataattttgtccattttctatTATGTTTGATT
TGAAgtgtttctttgtaatttttgaaaaataacttttttaaatattatta
ttttttgcaaGTATGGTTATTAGTTCAAGAAAGTATAATTGTTTTGGGAT
ATATTCATTTTTTGCTGTTGGTGCATTGGTTTTCCTCCCTTCAATTATTT
TGTAAACTAAGGCCCTAGCATATGCTTGGGAATTGAAAATAAGGTCAAAA
ATCGTTGTGAAAttaca Coding sequence (CDS) from alignment at scaffold_316:296365..298281+ >TCONS_00059064 ID=TCONS_00059064|Name=TCONS_00059064|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_316:296365..298281+ (Clytia hemisphaerica)
ATGGGCATCAAAATACTCATTTTATTCACCGCGGTTTTGGCAATTGCTTA
TTCCTATCGCATAAGCAATGACGACTCTAACCAAGAAAGGAATCTCTACC
AAGCGCTACAAGATATGATTGATGAACGTGTGGCTGAAAAAATGGATCCT
AAACATGAATGTAAATTCGGAGGTCTATGTAACAACGTTTACAGCTATGG
ATGTCATAAGTATGTGAAGAAATGTGATGGTTCAGGATGCACAGAAATCG
GAACTTGCTGGCGTCAATGTTACTCAAACACGAAGACATGGTGTAGATTA
GCAGACACATCCAGACGTgaccaatttttttcttgtcaaAAAGATTCAGA
TTGTGCACACACCAGAGAACGAGGATTGTTAGGAAAACCTGCTAAGGAAG
TTTGCgaaatgaatttttctctttttagctCCGGGCCAATATGTCATGGA
TCAAATCCTTAAATGGGCATCAAAATACTCATTTTATTCACCGCGGTTTT
GGCAATTGCTTATTCCTATCGCATAAGCAATGACGACTCTAACCAAGAAA
GGAATCTCTACCAAGCGCTACAAGATATGATTGATGAACGTGTGGCTGAA
AAAATGGATCCTAAACATGAATGTAAATTCGGAGGTCTATGTAACAACGT
TTACAGCTATGGATGTCATAAGTATGTGAAGAAATGTGATGGTTCAGGAT
GCACAGAAATCGGAACTTGCTGGCGTCAATGTTACTCAAACACGAAGACA
TGGTGTAGATTAGCAGACACATCCAGACGTgaccaatttttttcttgtca
aAAAGATTCAGATTGTGCACACACCAGAGAACGAGGATTGTTAGGAAAAC
CTGCTAAGGAAGTTTGCgaaatgaatttttctctttttagctCCGGGCCA
ATATGTCATGGATCAAATCCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059064-exon-scaffold_316-1491911889:296365..296824 | TCONS_00059064-exon-scaffold_316-1491911889:296365..296824 | Clytia hemisphaerica | exon |
| TCONS_00059064-exon-scaffold_316-1510915933:296365..296824 | TCONS_00059064-exon-scaffold_316-1510915933:296365..296824 | Clytia hemisphaerica | exon |
| TCONS_00059064-exon-scaffold_316-1575043694:296365..296824 | TCONS_00059064-exon-scaffold_316-1575043694:296365..296824 | Clytia hemisphaerica | exon |
| TCONS_00059064-exon-scaffold_316-1491911889:297002..297253 | TCONS_00059064-exon-scaffold_316-1491911889:297002..297253 | Clytia hemisphaerica | exon |
| TCONS_00059064-exon-scaffold_316-1510915933:297002..297253 | TCONS_00059064-exon-scaffold_316-1510915933:297002..297253 | Clytia hemisphaerica | exon |
| TCONS_00059064-exon-scaffold_316-1575043694:297002..297253 | TCONS_00059064-exon-scaffold_316-1575043694:297002..297253 | Clytia hemisphaerica | exon |
| TCONS_00059064-exon-scaffold_316-1491911889:297715..298281 | TCONS_00059064-exon-scaffold_316-1491911889:297715..298281 | Clytia hemisphaerica | exon |
| TCONS_00059064-exon-scaffold_316-1510915933:297715..298281 | TCONS_00059064-exon-scaffold_316-1510915933:297715..298281 | Clytia hemisphaerica | exon |
| TCONS_00059064-exon-scaffold_316-1575043694:297715..298281 | TCONS_00059064-exon-scaffold_316-1575043694:297715..298281 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:296365..298281 + |
Blast
The following BLAST results are available for this feature:
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