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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059065 ID=TCONS_00059065|Name=TCONS_00059065|organism=Clytia hemisphaerica|type=transcript|length=2257bp
ATAAATGGCTACACATTGTTTTACAAGCATTATAGTGAATCACTTGTTAA
CCATTCGATAGAAGAAAAAACCAAGGCACCTTCATTATCAGATTTCAGTA
AACGTGTTGGGACGGCTTGGAGGAAGTTAGATTCCCAGATAAAAAAGGAG
TGGAACAAGAAAGCCCAGACAGAGAGAGAAAAAACGCCTGGTTACGAATG
TGGCTTGTGTGGCAaattctttaagcaaaaaaaaagaaagcggTTCCATG
AAAAACAATGTGGGGACGAATTATTTTGTTACAGCGAAGGTTGTGggaaa
acattcaaaacaaagGATCTTATGAAGAAGCACATGAAAACCCATGAGGA
GAATTATACTTGTAAAATATGCAACAAAAAATTTGGTATAAAGCAAACGT
TTTTAACACATGTAAAAAGTCACGAAAAGACTTTCGAATGCGATGCTTGT
GGAAAAAGGTTTGGTAGCAAGGGCAACATGGTCAGGCataacaaaaaaca
tttttgagttCATACTTTAATGTAAATATTTTCGTAACGAATGCTattct
ttcaatgaaaataaaacaaacttaGATAAAAAAGAATATGCTCAAGTGTT
ATTCTTCATTGGTCTTACCAACTGATTTAGATTTACATTTTGAAAGGTGT
TTCGTTTTGGTACTCATAGTTTTTCCCGCTTTGTGAGGTGCTGCTACATT
ATTTCTAACGTTGTCCGAAAAGGCATGTGGTCTCTTTCTGGATGGAATCT
TTCCAACAAAGGGATTATTTTTCACTTGTATACCTTTAACTCTTGCATTT
CTAGAGCCTGATAGAGATGCGCGCCTTTGAACAGCTCCTGGTTGCACAAA
AATCTTACCACGTTTGGCTTTCTTTAGAATAGAGTTTGCGGTAATTTTAC
GGCTGGTTGTCATAGTGCTTCCAAATGAATGAAATAGGCTTGTCAATCGG
GAGGTAGGATACTTTTGAACACGATCACAGAATGTCATTATTCCATTGAG
AAGTGATTGATCATTCTCTCGTACGTCGATTTTGGTTATCAAATATTTTG
TTGCTTTGCGCAGATTAGATCTGCATTCTTCGGCTGATGTTTGCTCGATt
ctgtttctttgaaattcagATTGGTCTTGAATAATAATCTTTTCAATTGC
AACTGCGTCATTTGTGGTATAACTGTCAGCTTGGTTGTTTGCTTGCTGGG
TGTTATCCGAATGAATACCTTCATAATACGAATCGGGTAATGATTTTCCG
ATAGCGATGTATGCGTATCCTTTTCTCTCTTCTGCGTTTAGATAGGGTAA
AAAATTTCGGCCTTTGCCAAGCTTATGACTCCACACAACGTATTGGTGCT
TACAGACTGAACCATCTAAACCCACTTCACATGTACAAACACCAATATCC
ATGTCAATGGTATAAGTAGAATCGGCATTTGTAAAACTTGGACAATTATA
AACTGACGGACCAACTTGTATGATTTGAGAGGCAAACGACGCTTGACTGA
CTAAATCAGGTAACCGAAATACCTTTCCACCACTTTTGTTCTTCTTCTCT
TTCCGTTTGAATCGTTGAGCATAAACACCGTCGAAACTTCCAGAGGCTAC
ATTTAAAAGTTTAACTTTGTAATGCTCATTGAGCtcatttgtcattttat
caaacaaaccaTTTATATTAATTTCTTTAGTTCTATTTAGGATGTTGTCC
TTAAGGACTAAGAATTGAGCCTCGACTGCATTATTTGTATTATTACCCCT
TAACATCAATTTTCTTCGGAAGCAAAGTGCCCAACTGGTTTTATAATCAT
ACAAGCCATTTAAGTAAGATGAGAGTTTAGGATATATTGATACAACACTC
TCTTGAATTGTGTCATTATACCCGGTCTGTCGCCAGCtgcaattccattg
tttttgtcAAATAACCAGCGCCAAACTTGTTGGAGAATATGAAATATACA
TAGTAAAAGGGTTGATTCTGGCCAAGTGTTCTTCAATGCATCACGCAATT
CGGAACAGTTGTCAGTCATGAAAACGGATGGTCCCCGGCGCTTTCCACGT
TTATAGAAAGCCAAATCAGGTAACAGAGCCAAGTACAATTCAAGTGCTTG
GATCAAGGTATCCGTTGTCTCATCACTTGTAAACAAAATTCCAAGCGGTA
AGACACCAATTGGCGTATGAGTCACCAGGAGAAAAACTCTGAGATTGAAC
TCTTCTGTATTTGATGTCGAATCAATAAAGACCAACTCAGCCGCTGTAGG
AACCTAA Run BLAST on NCBI transcript from alignment at scaffold_316:65478..68244- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059065 ID=TCONS_00059065|Name=TCONS_00059065|organism=Clytia hemisphaerica|type=transcript|length=2767bp|location=Sequence derived from alignment at scaffold_316:65478..68244- (Clytia hemisphaerica)
ATAAATGGCTACACATTGTTTTACAAGCATTATAGTGTACGTACAAATCT
TAAGCGTGATAACCTAAATATATACAAAGCTTTCATTACTGCAAAACGAA
CTAAAATTATTACTTAATCTTATACTATTGTTTTATCTTTTTCTGTTTCA
GGAATCACTTGTTAACCATTCGATAGAAGAAAAAACCAAGGCACCTTCAT
TATCAGATTTCAGTAAACGTGTTGGGACGGCTTGGAGGAAGTTAGATTCC
CAGATAAAAAAGGTATTTCTATGAAATTTATTGGTAAACCAAATTTAAAT
TCAACCAATAAAACTAGCGAACGATTAAAAATAAACGTAAGACTGTAAGA
TTTAACATAGTAGAAAAGTCAGAGCTAAAGATTTATACTATTTTGGTGAA
TTGCACCAAATCTATACCGTCTTCCGTCCGTCACACTTTTTCCTCTAGGG
CTAAGTACAAAAGTGCAACCATCAATTGGTTTGTATTTTCTGAAAGAATA
CCATAAAGATACAAAATTTTAACTTTATCTCTGATCAAAATATCTTTGAT
CTTGAAAAAATCTTGTTGTGACGGACGGGACACGGTACAGATTTGGTGCA
ATTCACCCATTTTCTCCCTTTGAAATAATTTTTCTGAATTGTATCGTTAA
TTTTCAGGAGTGGAACAAGAAAGCCCAGACAGAGAGAGAAAAAACGCCTG
GTTACGAATGTGGCTTGTGTGGCAAATTCTTTAAGCAAAAAAAAAGAAAG
CGGTTCCATGAAAAACAATGTGGGGACGAATTATTTTGTTACAGCGAAGG
TTGTGGGAAAACATTCAAAACAAAGGATCTTATGAAGAAGCACATGAAAA
CCCATGAGGAGAATTATACTTGTAAAATATGCAACAAAAAATTTGGTATA
AAGCAAACGTTTTTAACACATGTAAAAAGTCACGAAAAGACTTTCGAATG
CGATGCTTGTGGAAAAAGGTTTGGTAGCAAGGGCAACATGGTCAGGCATA
ACAAAAAACATTTTTGAGTTCATACTTTAATGTAAATATTTTCGTAACGA
ATGCTATTCTTTCAATGAAAATAAAACAAACTTAGATAAAAAAGAATATG
CTCAAGTGTTATTCTTCATTGGTCTTACCAACTGATTTAGATTTACATTT
TGAAAGGTGTTTCGTTTTGGTACTCATAGTTTTTCCCGCTTTGTGAGGTG
CTGCTACATTATTTCTAACGTTGTCCGAAAAGGCATGTGGTCTCTTTCTG
GATGGAATCTTTCCAACAAAGGGATTATTTTTCACTTGTATACCTTTAAC
TCTTGCATTTCTAGAGCCTGATAGAGATGCGCGCCTTTGAACAGCTCCTG
GTTGCACAAAAATCTTACCACGTTTGGCTTTCTTTAGAATAGAGTTTGCG
GTAATTTTACGGCTGGTTGTCATAGTGCTTCCAAATGAATGAAATAGGCT
TGTCAATCGGGAGGTAGGATACTTTTGAACACGATCACAGAATGTCATTA
TTCCATTGAGAAGTGATTGATCATTCTCTCGTACGTCGATTTTGGTTATC
AAATATTTTGTTGCTTTGCGCAGATTAGATCTGCATTCTTCGGCTGATGT
TTGCTCGATTCTGTTTCTTTGAAATTCAGATTGGTCTTGAATAATAATCT
TTTCAATTGCAACTGCGTCATTTGTGGTATAACTGTCAGCTTGGTTGTTT
GCTTGCTGGGTGTTATCCGAATGAATACCTTCATAATACGAATCGGGTAA
TGATTTTCCGATAGCGATGTATGCGTATCCTTTTCTCTCTTCTGCGTTTA
GATAGGGTAAAAAATTTCGGCCTTTGCCAAGCTTATGACTCCACACAACG
TATTGGTGCTTACAGACTGAACCATCTAAACCCACTTCACATGTACAAAC
ACCAATATCCATGTCAATGGTATAAGTAGAATCGGCATTTGTAAAACTTG
GACAATTATAAACTGACGGACCAACTTGTATGATTTGAGAGGCAAACGAC
GCTTGACTGACTAAATCAGGTAACCGAAATACCTTTCCACCACTTTTGTT
CTTCTTCTCTTTCCGTTTGAATCGTTGAGCATAAACACCGTCGAAACTTC
CAGAGGCTACATTTAAAAGTTTAACTTTGTAATGCTCATTGAGCTCATTT
GTCATTTTATCAAACAAACCATTTATATTAATTTCTTTAGTTCTATTTAG
GATGTTGTCCTTAAGGACTAAGAATTGAGCCTCGACTGCATTATTTGTAT
TATTACCCCTTAACATCAATTTTCTTCGGAAGCAAAGTGCCCAACTGGTT
TTATAATCATACAAGCCATTTAAGTAAGATGAGAGTTTAGGATATATTGA
TACAACACTCTCTTGAATTGTGTCATTATACCCGGTCTGTCGCCAGCTGC
AATTCCATTGTTTTTGTCAAATAACCAGCGCCAAACTTGTTGGAGAATAT
GAAATATACATAGTAAAAGGGTTGATTCTGGCCAAGTGTTCTTCAATGCA
TCACGCAATTCGGAACAGTTGTCAGTCATGAAAACGGATGGTCCCCGGCG
CTTTCCACGTTTATAGAAAGCCAAATCAGGTAACAGAGCCAAGTACAATT
CAAGTGCTTGGATCAAGGTATCCGTTGTCTCATCACTTGTAAACAAAATT
CCAAGCGGTAAGACACCAATTGGCGTATGAGTCACCAGGAGAAAAACTCT
GAGATTGAACTCTTCTGTATTTGATGTCGAATCAATAAAGACCAACTCAG
CCGCTGTAGGAACCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059065-exon-scaffold_316-1575043694:68209..68244 | TCONS_00059065-exon-scaffold_316-1575043694:68209..68244 | Clytia hemisphaerica | exon |
| TCONS_00059065-exon-scaffold_316-1575043694:67983..68093 | TCONS_00059065-exon-scaffold_316-1575043694:67983..68093 | Clytia hemisphaerica | exon |
| TCONS_00059065-exon-scaffold_316-1575043694:65478..67587 | TCONS_00059065-exon-scaffold_316-1575043694:65478..67587 | Clytia hemisphaerica | exon |
| TCONS_00059065-exon-scaffold_316-1510915933:68209..68244 | TCONS_00059065-exon-scaffold_316-1510915933:68209..68244 | Clytia hemisphaerica | exon |
| TCONS_00059065-exon-scaffold_316-1510915933:67983..68093 | TCONS_00059065-exon-scaffold_316-1510915933:67983..68093 | Clytia hemisphaerica | exon |
| TCONS_00059065-exon-scaffold_316-1510915933:65478..67587 | TCONS_00059065-exon-scaffold_316-1510915933:65478..67587 | Clytia hemisphaerica | exon |
| TCONS_00059065-exon-scaffold_316-1491911889:68209..68244 | TCONS_00059065-exon-scaffold_316-1491911889:68209..68244 | Clytia hemisphaerica | exon |
| TCONS_00059065-exon-scaffold_316-1491911889:67983..68093 | TCONS_00059065-exon-scaffold_316-1491911889:67983..68093 | Clytia hemisphaerica | exon |
| TCONS_00059065-exon-scaffold_316-1491911889:65478..67587 | TCONS_00059065-exon-scaffold_316-1491911889:65478..67587 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:65478..68244 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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