TCONS_00059071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059071
Unique NameTCONS_00059071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059071 ID=TCONS_00059071|Name=TCONS_00059071|organism=Clytia hemisphaerica|type=transcript|length=404bp
ATAAAAAGAGGGGAAAGGCTTTTAAGAATCATTCAATTCTGAAGATCACC
AAAAGAGAGAtatcaaaaaagaagatttattaCTGCGCTAATCAAGACAG
TGAAAGATGAAACTTCTTTGCTTGGCAATACTTTGTTTTTTCATATCAAC
TACAAAAGCTAACCAAAATGCATATGAAAAATCGCATGACGGAAAACTTG
AGTCCAGATTGAGATTTGAAAACGTTGAAGATGCCACAATAAACGATGAT
AAAGAAGATCAAAAAGAAGATTTGGAAAATGACGATAATGATGATAACGA
TAATGACCATgagaatgaagaagaaaatgaagaggaaGACAACACAGATA
AcgataatgatgatgatgacgaaATAAAAGATCGCCAGCTTCAAAAAGCC
GATC
Run BLAST on NCBI

protein sequence of TCONS_00059071-protein

>TCONS_00059071-protein ID=TCONS_00059071-protein|Name=TCONS_00059071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MKLLCLAILCFFISTTKANQNAYEKSHDGKLESRLRFENVEDATINDDKE
DQKEDLENDDNDDNDNDHENEEENEEEDNTDNDNDDDDEIKDRQLQKAD
Run BLAST on NCBI

transcript from alignment at scaffold_316:116136..116725-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059071 ID=TCONS_00059071|Name=TCONS_00059071|organism=Clytia hemisphaerica|type=transcript|length=590bp|location=Sequence derived from alignment at scaffold_316:116136..116725- (Clytia hemisphaerica)
ATAAAAAGAGGGGAAAGGCTTTTAAGAATCATTCAATTCTGAAGATCACC
AAAAGAGAGATATCAAAAAAGAAGATTTATTACTGCGCTAATCAAGACAG
TGAAAGATGAAACTTCTTTGCTTGGCAATACTTTGTTTTTTCATATCAAC
TACAAAAGGTATTCCTTACTTCAATTTTTCTCTTCTAATCAATAATAAAC
TGATAATGGCCATTACTAACTACTCGTTTACGCGTTACCTTCCAGAAAAG
TTACAATTGTTTGGGATGTTAAATTGCGGACTGCTCTCATCTAGATTTTA
TGTTGAAGGGATTAATTTTCAAACCCATGATTTGTTTTACTTAGCTAACC
AAAATGCATATGAAAAATCGCATGACGGAAAACTTGAGTCCAGATTGAGA
TTTGAAAACGTTGAAGATGCCACAATAAACGATGATAAAGAAGATCAAAA
AGAAGATTTGGAAAATGACGATAATGATGATAACGATAATGACCATGAGA
ATGAAGAAGAAAATGAAGAGGAAGACAACACAGATAACGATAATGATGAT
GATGACGAAATAAAAGATCGCCAGCTTCAAAAAGCCGATC

Coding sequence (CDS) from alignment at scaffold_316:116136..116725-

>TCONS_00059071 ID=TCONS_00059071|Name=TCONS_00059071|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_316:116136..116725- (Clytia hemisphaerica)
CTAACCAAAATGCATATGAAAAATCGCATGACGGAAAACTTGAGTCCAGA
TTGAGATTTGAAAACGTTGAAGATGCCACAATAAACGATGATAAAGAAGA
TCAAAAAGAAGATTTGGAAAATGACGATAATGATGATAACGATAATGACC
ATGAGAATGAAGAAGAAAATGAAGAGGAAGACAACACAGATAACGATAAT
GATGATGATGACGAAATAAAAGATCGCCAGCTTCAAAAAGCCGATATGAA
ACTTCTTTGCTTGGCAATACTTTGTTTTTTCATATCAACTACAAAAGCTA
ACCAAAATGCATATGAAAAATCGCATGACGGAAAACTTGAGTCCAGATTG
AGATTTGAAAACGTTGAAGATGCCACAATAAACGATGATAAAGAAGATCA
AAAAGAAGATTTGGAAAATGACGATAATGATGATAACGATAATGACCATG
AGAATGAAGAAGAAAATGAAGAGGAAGACAACACAGATAACGATAATGAT
GATGATGACGAAATAAAAGATCGCCAGCTTCAAAAAGCCGATATGAAACT
TCTTTGCTTGGCAATACTTTGTTTTTTCATATCAACTACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037201XLOC_037201Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059071-proteinTCONS_00059071-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059071-exon-scaffold_316-1575043694:116568..116725TCONS_00059071-exon-scaffold_316-1575043694:116568..116725Clytia hemisphaericaexon
TCONS_00059071-exon-scaffold_316-1575043694:116136..116381TCONS_00059071-exon-scaffold_316-1575043694:116136..116381Clytia hemisphaericaexon
TCONS_00059071-exon-scaffold_316-1510915933:116568..116725TCONS_00059071-exon-scaffold_316-1510915933:116568..116725Clytia hemisphaericaexon
TCONS_00059071-exon-scaffold_316-1510915933:116136..116381TCONS_00059071-exon-scaffold_316-1510915933:116136..116381Clytia hemisphaericaexon
TCONS_00059071-exon-scaffold_316-1491911889:116568..116725TCONS_00059071-exon-scaffold_316-1491911889:116568..116725Clytia hemisphaericaexon
TCONS_00059071-exon-scaffold_316-1491911889:116136..116381TCONS_00059071-exon-scaffold_316-1491911889:116136..116381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:116136..116725 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.177417	0	0	1.71747	0.387762	1.16954	2.40881	0.30663	0.189905	1.07384	0	14.6664	9.42653	3.92862	1.24675	0.273159	1.25991	0.193403	0.404765	0	0	0.208606	0	0.390676	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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