TCONS_00059077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059077
Unique NameTCONS_00059077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length966

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059077 ID=TCONS_00059077|Name=TCONS_00059077|organism=Clytia hemisphaerica|type=transcript|length=966bp
cTTACTCTTATGCATGTTTGAGTTTGATTTTGCATTTAAAttccgttttt
tttttgtacattagtATATTAAGTTTAGGTTTTCAAATTTGAGAATTGAT
GCCAAATTGACATGGGATATATACTTGGTTTGTTTTTGGCGATAATGGTC
ATTAACAATGTTGACAGTCAAGAATTAAAACTGCGGAAACCTTATTCCCA
AAAGAATTGTCCTGCAACAATGACAAACCAAATGAAAGCTGCAAACATAC
TAATCGCACGTAAAATCATCAGAAAACTCGAAAATATTACCTCTGTCTTA
GACTGCTCACAGCCGTGTGCGTCAGATAGTCTGTGTGCGTACTTTTCCTA
CCATTCAGTGAACCGTCGTTGTCTACATTTTAAGGGTCTGTTGGCAGAAC
ATACTATAGCTCAATTAATGTCAGACGGTTGGAGATATGGACGTAGTGTC
AATGGAAAGatTGTGTTTTACACAAAACTGAGCACATGTGATACAGAATA
CTGTCAAAAATCATGTTTGTTTGATATCAAGGAATTTGTTGATGGTTTTA
TTCCGTATGGAGCGGGAAATGGTGACCAATTTGTTCGAGAAGGAGATGAC
GTCACCGATTGTACTCCAGTTTCAGGGGATTTCCCCTTATTCACTACGAA
AGGACATTATAGATTATGCATTTCTTCAAACGGATATTTCACGGTAGATA
CTCAAAGTTTTTCTTATACGCCATCATTAGAAAACAATGCACATATAATG
ATGATTCCGTTCAACGCAGATACGAGAAGTAATGGCTCCGACATATCCTT
CAGAATGACTTCAGATCCAAACGATATGATACTCATTGATGAAGCGATAA
TGTTGTCTCTTAATCGACCAGGTTATCCAGCAGACTATAAAACCAAACAA
GCTTTATTGGTCACAAATAATAATATCCCTCATTATAAATATAGTCGATC
TAATGAGAGATACCAT
Run BLAST on NCBI

transcript from alignment at scaffold_316:225065..230023-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059077 ID=TCONS_00059077|Name=TCONS_00059077|organism=Clytia hemisphaerica|type=transcript|length=4959bp|location=Sequence derived from alignment at scaffold_316:225065..230023- (Clytia hemisphaerica)
CTTACTCTTATGCATGTTTGAGTTTGATTTTGCATTTAAATTCCGTTTTT
TTTTTGTACATTAGTATATTAAGTTTAGGTTTTCAAATTTGAGAATTGAT
GCCAAATTGACATGGGATATATACTTGGGTAAGTCGTTTAAGTGTTCTTT
GCTAGTTTTGTTTTAGGGTAGAAAATCGAGTTTAATTACTATTTGGCTTT
GCACTGGGCGAAATAATAAGAGATTTCCAATCCTGGAAGTTTAGGAAATA
TTATATTTCATAATATTTCCAAATCTGAAGTTCATTGAAATATCATGAAA
TATCATAAAATATGATATTTCCTAAACAGTTTTTAAGGGAAAGCCTTTGA
AGGGTTATAACACTTGTAGGACTATGTATATATTTCCCAGTTTGAACTAT
AAGTGATTTTGGTTGTTCAGAGATGCTGACTCGGTCGATCTGGCAACCCA
TGGTGTAGTGCTGATGAGTCCCAATAAGGATGAAATTTATTCGCCTGCTC
TGCCACCCAATCTCCTGAGTGAATGAGATTGAGGGAGGCCGCTTTTTTGC
CAAATAGATTTTTGTTTTCCCGATTCCTGGCGAATTCTATCTCACTTTTA
GCCTTTAGTCCCTCGACTTTTGCGGTTGTTCTGCCGGGCATGTGGACAGA
AAATCTTATTTCTTCACATCTATTTTCTCAACAATAGAAAAGCCACTATA
ATCTCTAAATCCAATTTTCCACTTTTAGTTTGTTTTTGGCGATAATGGTC
ATTAACAATGTTGACAGTCAAGAATTAAAACTGCGGAAACCTTATTCCCA
AAAGAATTGTCCTGCAACAATGACAAACCAAATGAAAGCTGCAAACATAC
TAATCGCACGTAAAATCATCAGAAAACTCGAAAATATTACCTCTGTCTTA
GACTGCTCACAGCCGTGTGCGTCAGATAGTCTGTGTGCGTACTTTTCCTA
CCATTCAGTGAACCGTCGTTGTCTACATTTTAAGGGTCTGTTGGCAGAAC
ATACTATAGCTCAATTAATGTCAGACGGTTGGAGATATGGACGTAGTGTC
AATGGAAAGGTATTTTCTAATAAATTTCGTCTCAAAATTCTACACTCTCC
TTAGAACAAGTGCATTTTTTCTTTCCAAATTTCAAGAAAAACTTTTGCCT
TAAAGTGGAAGCTTAGTAGGGTGAAATTTAAGTTTGGGAAAACTTTGTCA
CTTTTGCCTAAAAATTTTGCTATTTTTTCCTGAATAAATTTTCCCCTTTA
ATGAGGTAAAATTACTTGATTTTCCTCGTGATTCTTTTCTTTTGGAAATA
AATTGTGAATCAATGTTGGTATTTCTACTGTTTTTCTCATTAAACCCCCT
TCTCACAGACCCACTGGGACCTCTTCCCTCTCGAAAAATTAGCCAAAATA
TCGTCCCGGTGGAAAATTATCCTTCAATTTTTGTCCCCACTGAAAATAAT
CAAATAAATCTCACTGCAAACTATTTATTATTTTCACATCTCCACTGAAT
TTTCACTGACATGAAAACAAAAGAATTGAAATTCCCAGCCATAAAAAATA
TGGGACTACCAGTTCCATCGAGTTTCAGGCCGTTATTTTTTTCCCCACTG
GCTGATAAAACCACACTGGGTGTATGAGGAGGGGGTGTCTCTTTGCTTTT
TGTAACGTTATCAATCGCCGTTGACAAATCAAAAGGGCCAATCGCAAAAT
TAGTATCTGCGAAAACTAAGAGTTTTCTTTCTAGCTAGCCTTAAATTTGA
GATTGGACCATTTTGCATGGTGAGTAGGGTCCCATCTACATGAAACAGGG
TCAATCTAAAAAAATAAAAGAAAAATTCTTAGTTTTCTCAGGCAATAATT
TTGAGATTTGACTTTTTGATTTGTCAACGACGCAATGTTATGTTTGTTAG
ATGAACGTTAAAACAACCTTACACATCAGTCAGGGTATTTAAGTGGTGAA
ACAATGAAATTCAACCAATTTTTCGTCATTTGATACAATTTTCAACAAAC
TAAATTTAATCATCTCGAGGGAAAAACAAGCATCTTATCTTACTGAGAAG
TTTTGTTTATTGAAGGTACCGAGGGTTTGGTTTACAAGATGACGGGTATG
TCCGAGCCTTAGAGAGAGGAAAAATTGGCGTTTTTGGGAGCCTTAAATAG
ACTTTTCTAAAAACTTTCGCCCATTTTCATGTGATCTTTTTTTGAATAAA
TCACGACCCTTTGAGAGAGGAAATTTTGAATTTCGTGATTTTTGAACCCT
TACAGAGACTCAATTTTCTTTTTAATGGTTTTTGCACCCCTTTGAGAGAC
TTTCGAGGGTGTGAAAAAGGCACCTTTATGGCTCGCACATACCTGACACC
CATTTTGTCGAAGTACCCACCTCCCCCGGGTTGAATGTACATGATTAATC
TTAGACAGGTTAAGCCACTGTGCTCTGTTTTCACCTAGTTCGTCATGGTG
TGGCGAAAATTCGATTGTGTTTTTTTCAATTTAGATTGTGTTTTACACAA
AACTGAGCACATGTGATACAGAATACTGTCAAAAATCATGTTTGTTTGAT
ATCAAGGAATTTGTTGATGGTAAGCTTGTATCTACTACTATTTTCTTTTT
TGTCCTCTGTGATCCCAATGTACATCAAACTCTAAACTAGACTATGCTAT
AGTCTAAGACAAGTTTCATCTAAGAGGAACAAACGTGAAGACGGGAATTT
TTTACGGGGGTGGCTGTTGTCACAGACTCTATCCGCCGCGAAACATATTA
CGTTTTATATATACAAACTATGTTATATCATAATAATATATTATACGGAC
GATAGCATCGTCTAACTCTAAACGAGAGTCAAAATTCCGAAATTACGACC
TAAGTGTTGCTGAAGTGCGTACTATACCCGTTTTTTATAAAAATGAAGTT
TTCATTTCACCATAAATATTCTTAGATTTTATGAAAAATTCCATGATAAC
GATATTTTTAGCATGTTCTTAATTTTTTAGCTAATTTCATCGGATATTTT
TATAGAGTATATTCTGTATTTAAATTAAGTCAATGAATGAATAAAGTCAG
TAAAATTAAAAGGTTAAAGTTTGTTCTTATAAAAACTACGTGTATTGAAC
AAAGGATTGAAACAAAAATACCATTAGATGTCAGAATGAATAAAACCTTG
CACATGTTAAACATCAAACTTTGTGATAACAGTTATCTATCACCAAGAAG
ATGCAGAAACTTTCATCTGACACGCTAAAGCTCTGAAGGACGGGAAGGTT
TAGGTTATAAGCTCCTCAATGTTGAAATACTTGTCCTCGCAAATGTCTTC
ATTTTCTTTTTCATCAATTTTTTTCAATGCAGTTTTGGAATTTTCAGATT
CAGGAATAGTCTGTCTAACAGAAAATGTATAACATGTCGTAGTTTTGTTG
GTTACATCAGTCAGAAAACACATTTTAAACACGGCATTTATGAAAAATTC
ACTATGGTCCTTATAGAATTTCAAAATGACCGCGTCTAAAATTTTTGCGG
TGGATTCAACATTTCTGCTTTACGCGCAAGGGTAGTTGAACCCGACTGGG
GAAGCGACACATCAAAGGCCGACTATTCTAATCCTCTCCGATGGGAAGTT
GGCCTGCTCTTTTAAAGCTTTAGCATGGGCGGCCGCCAATCCGCCATCGA
ATATATACCAGATAATTATAACTTCTTTTTTTTTTCGTCTCAGGTTTTAT
TCCGTATGGAGCGGGAAATGGTGACCAATTTGTTCGAGAAGGAGATGACG
TCACCGATTGTACTCCAGTTTCAGGGGATTTCCCCTTATTCACTACGAAA
GGACATTATAGATTATGCGTGAGTCAATTTCTACAATTTATAGATCTAAT
ACAGTGTGTCCCGAAAAAAGGATAAAGAATTTACAACAATAAATAAAAAT
CCATGGATAAGATATATTTTTTTTGGTTTTCCCCTTGTTCACTACGAAAG
GACATTATAGATTATGTGTGAGCCATTTGCTACAATTTATAGATCTAATA
CAGTGTGTCCCGAAAAAGGGTAAGGAATTTACATCAATAAAAATCCATGA
ATAAGATATATTTTTTTGGTTTTACCCTTGTTCACTACGAAAGGGCATTA
TAGATTATGTGTGAGCCATTTGCTACAATTTATAAATCTACAGTGTGCCC
CGAGAAAAGGGTAAGGAATTTTCAACAAAAAAAATCCATGGATAAGATAT
ATGATAAGATACATTAGAATTTTACTATCAGACTTGCAATTCAGTAGTCA
CCAAACATACCCTTACAATGTATCCAGCTAAAAGAATACCATTGTAGTGC
ACTCCATCAAAAGTACAGCCTTATAGTGCATTTCAAGGGTCTCGAAAAAC
CTACCATTAAGGGCGGTAAATGCCGTAAGTCGGACCATATGAGTGCACCC
CCACTCGGATTTTACCAAGTTTATGTATTTGCACTTTTCAGGACGGTAGA
GTGACTGAAGCGATTTTGAAAAACCCACAATTCCGCCCCGCAAAATCGAG
GACAGTAAAAGTGCTAATTTACTGTCGTCCTCAGCTGGTTAGGATCTACT
CAAATTAGAACCTTACCGTCTCCGTCGCTGAAAAACACACATACATAAAC
TTGCTTTTATCTTGTAGATTCAACTGTATTTTAAGATCGTTTTTTTTAAT
TTTTCTTACCAGATTTCTTCAAACGGATATTTCACGGTAGATACTCAAAG
TTTTTCTTATACGCCATCATTAGAAAACAATGCACATATAATGATGATTC
CGTTCAACGCAGATACGAGAAGTAATGGCTCCGACATATCCTTCAGAATG
ACTTCAGATCCAAACGATATGATACTCATTGATGAAGCGATAATGTTGTC
TCTTAATCGACCAGGTTATCCAGCAGACTATAAAACCAAACAAGCTTTAT
TGGTCACAAATAATAATATCCCTCATTATAAATATAGTCGATCTAATGAG
AGATACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037205XLOC_037205Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059077-exon-scaffold_316-1575043694:229896..230023TCONS_00059077-exon-scaffold_316-1575043694:229896..230023Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1575043694:228965..229295TCONS_00059077-exon-scaffold_316-1575043694:228965..229295Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1575043694:227455..227539TCONS_00059077-exon-scaffold_316-1575043694:227455..227539Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1575043694:226206..226330TCONS_00059077-exon-scaffold_316-1575043694:226206..226330Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1575043694:225065..225361TCONS_00059077-exon-scaffold_316-1575043694:225065..225361Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1510915933:229896..230023TCONS_00059077-exon-scaffold_316-1510915933:229896..230023Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1510915933:228965..229295TCONS_00059077-exon-scaffold_316-1510915933:228965..229295Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1510915933:227455..227539TCONS_00059077-exon-scaffold_316-1510915933:227455..227539Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1510915933:226206..226330TCONS_00059077-exon-scaffold_316-1510915933:226206..226330Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1510915933:225065..225361TCONS_00059077-exon-scaffold_316-1510915933:225065..225361Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1491911889:229896..230023TCONS_00059077-exon-scaffold_316-1491911889:229896..230023Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1491911889:228965..229295TCONS_00059077-exon-scaffold_316-1491911889:228965..229295Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1491911889:227455..227539TCONS_00059077-exon-scaffold_316-1491911889:227455..227539Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1491911889:226206..226330TCONS_00059077-exon-scaffold_316-1491911889:226206..226330Clytia hemisphaericaexon
TCONS_00059077-exon-scaffold_316-1491911889:225065..225361TCONS_00059077-exon-scaffold_316-1491911889:225065..225361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:225065..230023 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0522592	0	0	0	0	0	0	0	0	0	1.21531	2.25623	0.153502	0.107629	0	0	0	1.90901	0	0	0	0	0	0	0	0	0.030565	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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